Skip to main content
American Journal of Human Genetics logoLink to American Journal of Human Genetics
. 1985 Jul;37(4):778–784.

Extremely high frequencies of alpha-globin gene deletion in Madang and on Kar Kar Island, Papua New Guinea.

P T Yenchitsomanus 1, K M Summers 1, K K Bhatia 1, J Cattani 1, P G Board 1
PMCID: PMC1684607  PMID: 9556666

Abstract

Extremely high frequencies of the deletion form of alpha(+)-thalassemia (-alpha/), as studied by the DNA mapping technique, were found in the population of Madang, a coastal province in the north of Papua New Guinea (PNG) and in the population of Kar Kar, an island situated near Madang. Ninety-seven percent of the population tested from Madang and 89% of that from Kar Kar Island were either alpha(+)-thalassemia heterozygotes or homozygotes. By contrast, no examples of the deletion form were detected in the Eastern Highlands of PNG. The haplotype frequencies of alpha(+)-thalassemia (-alpha/) in Madang and Kar Kar Island were found to be 81.33% and 66.67%, respectively. A more detailed analysis of the gene deletion revealed that in both populations 96% were of the 4.2 kilobase (kb) type and 4% were of the 3.7-kb type. Thus, this group is the only example in which the 4.2-kb deletion is predominant over 3.7-kb defect. The presence in high frequencies of alpha(+)-thalassemia in the coastal area of Madang and on the neighboring island, where malaria has long been holoendemic or hyperendemic, and its virtual absence from the nonmalarious highlands of PNG suggest the role of malaria as the selective factor in maintaining alpha(+)-thalassemia. If this selective pressure is still operating, and since alpha(+)-thalassemia has no apparent homozygous disadvantage, the abnormal haplotype (-alpha/) will be in the process of fixation in this population.

Full text

PDF
778

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abramson R. K., Rucknagel D. L., Shreffler D. C., Saave J. J. Homozygous Hb J Tongariki: evidence for only one alpha chain structural locus in Melanesians. Science. 1970 Jul 10;169(3941):194–196. doi: 10.1126/science.169.3941.194. [DOI] [PubMed] [Google Scholar]
  2. Amato D., Booth P. B. Hereditary ovalocytosis in Melanesians. P N G Med J. 1977 Mar;20(1):26–32. [PubMed] [Google Scholar]
  3. Beaven G. H., Hornabrook R. W., Fox R. H., Huehns E. R. Occurrence of heterozygotes and homozygotes for the alpha-chain haemoglobin variant Hb-J(Tongariki) in New Guinea. Nature. 1972 Jan 7;235(5332):46–47. doi: 10.1038/235046a0. [DOI] [PubMed] [Google Scholar]
  4. Bowden D. K., Pressley L., Higgs D. R., Clegg J. B., Weatherall D. J. alpha-globin gene deletions associated with Hb J Tongariki. Br J Haematol. 1982 Jun;51(2):243–249. [PubMed] [Google Scholar]
  5. Chockkalingam K., Board P. G., Nurse G. T. Glucose-6-phosphate dehydrogenase deficiency in Papua New Guinea. The description of 13 new variants. Hum Genet. 1982;60(2):189–192. doi: 10.1007/BF00569710. [DOI] [PubMed] [Google Scholar]
  6. Darlow B., Vrbova H., Stace J. Acute malaria in children in Madang: endemicity, clinical presentation and treatment. P N G Med J. 1981 Jun;24(2):85–95. [PubMed] [Google Scholar]
  7. Embury S. H., Lebo R. V., Dozy A. M., Kan Y. W. Organization of the alpha-globin genes in the Chinese alpha-thalassemia syndromes. J Clin Invest. 1979 Jun;63(6):1307–1310. doi: 10.1172/JCI109426. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Embury S. H., Miller J. A., Dozy A. M., Kan Y. W., Chan V., Todd D. Two different molecular organizations account for the single alpha-globin gene of the alpha-thalassemia-2 genotype. J Clin Invest. 1980 Dec;66(6):1319–1325. doi: 10.1172/JCI109984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Galanello R., Maccioni L., Ruggeri R., Perseu L., Cao A. Alpha thalassaemia in Sardinian newborns. Br J Haematol. 1984 Oct;58(2):361–368. doi: 10.1111/j.1365-2141.1984.tb06095.x. [DOI] [PubMed] [Google Scholar]
  10. Grunebaum L., Cazenave J. P., Camerino G., Kloepfer C., Mandel J. L., Tolstoshev P., Jaye M., De la Salle H., Lecocq J. P. Carrier detection of Hemophilia B by using a restriction site polymorphism associated with the coagulation Factor IX gene. J Clin Invest. 1984 May;73(5):1491–1495. doi: 10.1172/JCI111354. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Higgs D. R., Lamb J., Aldridge B. E., Clegg J. B., Weatherall D. J., Serjeant B. E., Serjeant G. R. Inadequacy of Hb Bart's as an indicator of alpha thalassaemia. Br J Haematol. 1982 May;51(1):177–178. doi: 10.1111/j.1365-2141.1982.tb07303.x. [DOI] [PubMed] [Google Scholar]
  12. Higgs D. R., Weatherall D. J. Alpha-thalassemia. Curr Top Hematol. 1983;4:37–97. [PubMed] [Google Scholar]
  13. Hill A. V., Bowden D. K., Trent R. J., Higgs D. R., Oppenheimer S. J., Thein S. L., Mickleson K. N., Weatherall D. J., Clegg J. B. Melanesians and Polynesians share a unique alpha-thalassemia mutation. Am J Hum Genet. 1985 May;37(3):571–580. [PMC free article] [PubMed] [Google Scholar]
  14. Huisman T. H., Schroeder W. A., Brodie A. N., Mayson S. M., Jakway J. Microchromatography of hemoglobins. II. A simplified procedure for the determination of hemoglobin A2. J Lab Clin Med. 1975 Oct;86(4):700–702. [PubMed] [Google Scholar]
  15. Lauer J., Shen C. K., Maniatis T. The chromosomal arrangement of human alpha-like globin genes: sequence homology and alpha-globin gene deletions. Cell. 1980 May;20(1):119–130. doi: 10.1016/0092-8674(80)90240-8. [DOI] [PubMed] [Google Scholar]
  16. Lie-Injo L. E., Solai A., Herrera A. R., Nicolaisen L., Kan Y. W., Wan W. P., Hasan K. Hb Bart's level in cord blood and deletions of alpha-globin genes. Blood. 1982 Feb;59(2):370–376. [PubMed] [Google Scholar]
  17. Mathew C. G., Rousseau J., Rees J. S., Harley E. H. The molecular basis of alpha thalassaemia in a South African population. Br J Haematol. 1983 Sep;55(1):103–111. doi: 10.1111/j.1365-2141.1983.tb01228.x. [DOI] [PubMed] [Google Scholar]
  18. Nasmyth K. A. The regulation of yeast mating-type chromatin structure by SIR: an action at a distance affecting both transcription and transposition. Cell. 1982 Sep;30(2):567–578. doi: 10.1016/0092-8674(82)90253-7. [DOI] [PubMed] [Google Scholar]
  19. Ohene-Frempong K., Rappaport E., Atwater J., Schwartz E., Surrey S. Alpha-gene deletions in black newborn infants with Hb Bart's. Blood. 1980 Nov;56(5):931–933. [PubMed] [Google Scholar]
  20. Old J. M., Clegg J. B., Weatherall D. J., Booth P. B. Haemoglobin J Tongariki is associated with alpha thalassaemia. Nature. 1978 May 25;273(5660):319–320. doi: 10.1038/273319a0. [DOI] [PubMed] [Google Scholar]
  21. Oppenheimer S. J., Higgs D. R., Weatherall D. J., Barker J., Spark R. A. Alpha thalassaemia in Papua New Guinea. Lancet. 1984 Feb 25;1(8374):424–426. doi: 10.1016/s0140-6736(84)91754-9. [DOI] [PubMed] [Google Scholar]
  22. Orkin S. H. The duplicated human alpha globin genes lie close together in cellular DNA. Proc Natl Acad Sci U S A. 1978 Dec;75(12):5950–5954. doi: 10.1073/pnas.75.12.5950. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Phillips J. A., 3rd, Vik T. A., Scott A. F., Young K. E., Kazazian H. H., Jr, Smith K. D., Fairbanks V. F., Koenig H. M. Unequal crossing-over: a common basis of single alpha-globin genes in Asians and American blacks with hemoglobin-H disease. Blood. 1980 Jun;55(6):1066–1069. [PubMed] [Google Scholar]
  24. Pirastu M., Lee K. Y., Dozy A. M., Kan Y. W., Stamatoyannopoulos G., Hadjiminas M. G., Zachariades Z., Angius A., Furbetta M., Rosatelli C. Alpha-thalassemia in two Mediterranean populations. Blood. 1982 Aug;60(2):509–512. [PubMed] [Google Scholar]
  25. Sancar G. B., Cedeno M. M., Rieder R. F. The varied arrangement of the alpha globin genes in alpha thalassemia and Hb H disease in American blacks. Johns Hopkins Med J. 1980 Jun;146(6):264–269. [PubMed] [Google Scholar]
  26. Sancar G. B., Rausher D. B., Baine R. M., Platica O., Cedeno M. M., Nawabi I., Rieder R. F. Alpha-thalassemia in Ashkenazi Jews. Ann Intern Med. 1983 Jun;98(6):933–936. doi: 10.7326/0003-4819-98-6-933. [DOI] [PubMed] [Google Scholar]
  27. Trent R. J., Mickleson K. N., Wilkinson T., Yakas J., Bluck R., Dixon M., Liley A. W., Kronenberg H. Alpha globin gene rearrangements in Polynesians are not associated with malaria. Am J Hematol. 1985 Apr;18(4):431–433. doi: 10.1002/ajh.2830180414. [DOI] [PubMed] [Google Scholar]
  28. Wilson J. T., Wilson L. B., deRiel J. K., Villa-komaroff L., Efstratiadis A., Forget B. G., Weissman S. M. Insertion of synthetic copies of human globin genes into bacterial plasmids. Nucleic Acids Res. 1978 Feb;5(2):563–581. doi: 10.1093/nar/5.2.563. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Winichagoon P., Higgs D. R., Goodbourn S. E., Clegg J. B., Weatherall D. J., Wasi P. The molecular basis of alpha-thalassaemia in Thailand. EMBO J. 1984 Aug;3(8):1813–1818. doi: 10.1002/j.1460-2075.1984.tb02051.x. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from American Journal of Human Genetics are provided here courtesy of American Society of Human Genetics

RESOURCES