Abstract
Two gram-positive, strictly anoxic, coccoid- to rod-shaped strains of bacteria, Clostridium coccoides 1410 and C. coccoides 3110, were isolated from human feces on the typical homoacetogenic substrates formate plus H2 plus CO2 (strain 1410) and vanillate plus H2 plus CO2 (strain 3110) in the presence of 2-bromoethanesulfonate to inhibit methanogenesis. On the basis of 16S rRNA sequencing, DNA-DNA hybridization, and physiological and morphological parameters, both isolates are closely related to C. coccoides DSM 935T. The G+C contents of the DNA were 46.1 and 46.2 mol% for C. coccoides 1410 and C. coccoides 3110, respectively. Cytochromes could not be detected. Formate was degraded exclusively to acetate, whereas vanillate was O-demethylated, resulting in acetate and 3,4-dihydroxybenzoate, the latter being further decarboxylated to catechol. In the presence of organic substrates, H2 was cometabolized to acetate, but both strains failed to grow autotrophically. Lactose, lactulose, sorbitol, glucose, and various other carbohydrates supported growth as well. Untypical of homoacetogens, glucose and sorbitol were fermented not exclusively to acetate; instead, considerable amounts of succinate and D-lactate were produced. H2 was evolved from carbohydrates only in negligible traces. Acetogenesis from formate plus H2 plus CO2 or vanillate plus H2 plus CO2 was constitutive, whereas utilization of carbohydrates was inducible. Hydrogenase, CO dehydrogenase, formate dehydrogenase, and all of the tetrahydrofolic acid-dependent, C1 compound-converting enzymes of the acetyl-coenzyme A pathway of homoacetogenesis were present in cell extracts.
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- Bernalier A., Rochet V., Leclerc M., Doré J., Pochart P. Diversity of H2/CO2-utilizing acetogenic bacteria from feces of non-methane-producing humans. Curr Microbiol. 1996 Aug;33(2):94–99. doi: 10.1007/s002849900081. [DOI] [PubMed] [Google Scholar]
- Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
- Bryant M. P. Commentary on the Hungate technique for culture of anaerobic bacteria. Am J Clin Nutr. 1972 Dec;25(12):1324–1328. doi: 10.1093/ajcn/25.12.1324. [DOI] [PubMed] [Google Scholar]
- Cashion P., Holder-Franklin M. A., McCully J., Franklin M. A rapid method for the base ratio determination of bacterial DNA. Anal Biochem. 1977 Aug;81(2):461–466. doi: 10.1016/0003-2697(77)90720-5. [DOI] [PubMed] [Google Scholar]
- Collins M. D., Lawson P. A., Willems A., Cordoba J. J., Fernandez-Garayzabal J., Garcia P., Cai J., Hippe H., Farrow J. A. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol. 1994 Oct;44(4):812–826. doi: 10.1099/00207713-44-4-812. [DOI] [PubMed] [Google Scholar]
- De Graeve K. G., Grivet J. P., Durand M., Beaumatin P., Cordelet C., Hannequart G., Demeyer D. Competition between reductive acetogenesis and methanogenesis in the pig large-intestinal flora. J Appl Bacteriol. 1994 Jan;76(1):55–61. doi: 10.1111/j.1365-2672.1994.tb04415.x. [DOI] [PubMed] [Google Scholar]
- De Ley J., Cattoir H., Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem. 1970 Jan;12(1):133–142. doi: 10.1111/j.1432-1033.1970.tb00830.x. [DOI] [PubMed] [Google Scholar]
- Dorn M., Andreesen J. R., Gottschalk G. Fermentation of fumarate and L-malate by Clostridium formicoaceticum. J Bacteriol. 1978 Jan;133(1):26–32. doi: 10.1128/jb.133.1.26-32.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Doré J., Morvan B., Rieu-Lesme F., Goderel I., Gouet P., Pochart P. Most probable number enumeration of H2-utilizing acetogenic bacteria from the digestive tract of animals and man. FEMS Microbiol Lett. 1995 Jul 15;130(1):7–12. doi: 10.1016/0378-1097(95)00176-6. [DOI] [PubMed] [Google Scholar]
- Hove H., Mortensen P. B. Colonic lactate metabolism and D-lactic acidosis. Dig Dis Sci. 1995 Feb;40(2):320–330. doi: 10.1007/BF02065417. [DOI] [PubMed] [Google Scholar]
- Hsu T., Daniel S. L., Lux M. F., Drake H. L. Biotransformations of carboxylated aromatic compounds by the acetogen Clostridium thermoaceticum: generation of growth-supportive CO2 equivalents under CO2-limited conditions. J Bacteriol. 1990 Jan;172(1):212–217. doi: 10.1128/jb.172.1.212-217.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kamlage B., Blaut M. Isolation of a cytochrome-deficient mutant strain of Sporomusa sphaeroides not capable of oxidizing methyl groups. J Bacteriol. 1993 May;175(10):3043–3050. doi: 10.1128/jb.175.10.3043-3050.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lajoie S. F., Bank S., Miller T. L., Wolin M. J. Acetate production from hydrogen and [13C]carbon dioxide by the microflora of human feces. Appl Environ Microbiol. 1988 Nov;54(11):2723–2727. doi: 10.1128/aem.54.11.2723-2727.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee A., Zumbe A., Storey D. Breath hydrogen after ingestion of the bulk sweeteners sorbitol, isomalt and sucrose in chocolate. Br J Nutr. 1994 May;71(5):731–737. doi: 10.1079/bjn19940180. [DOI] [PubMed] [Google Scholar]
- Ljungdahl L. G. The autotrophic pathway of acetate synthesis in acetogenic bacteria. Annu Rev Microbiol. 1986;40:415–450. doi: 10.1146/annurev.mi.40.100186.002215. [DOI] [PubMed] [Google Scholar]
- Miller T. L., Wolin M. J. Pathways of acetate, propionate, and butyrate formation by the human fecal microbial flora. Appl Environ Microbiol. 1996 May;62(5):1589–1592. doi: 10.1128/aem.62.5.1589-1592.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Misoph M., Drake H. L. Effect of CO2 on the fermentation capacities of the acetogen Peptostreptococcus productus U-1. J Bacteriol. 1996 Jun;178(11):3140–3145. doi: 10.1128/jb.178.11.3140-3145.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Morvan B., Dore J., Rieu-Lesme F., Foucat L., Fonty G., Gouet P. Establishment of hydrogen-utilizing bacteria in the rumen of the newborn lamb. FEMS Microbiol Lett. 1994 Apr 15;117(3):249–256. doi: 10.1016/0378-1097(94)90567-3. [DOI] [PubMed] [Google Scholar]
- Rainey F. A., Janssen P. H. Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus Ruminococcus. FEMS Microbiol Lett. 1995 Jun 1;129(1):69–73. doi: 10.1016/0378-1097(95)00138-U. [DOI] [PubMed] [Google Scholar]
- Rainey F. A., Stackebrandt E. 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia. FEMS Microbiol Lett. 1993 Oct 15;113(2):125–128. doi: 10.1111/j.1574-6968.1993.tb06501.x. [DOI] [PubMed] [Google Scholar]
- Roediger W. E. Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man. Gut. 1980 Sep;21(9):793–798. doi: 10.1136/gut.21.9.793. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Royall D., Wolever T. M., Jeejeebhoy K. N. Clinical significance of colonic fermentation. Am J Gastroenterol. 1990 Oct;85(10):1307–1312. [PubMed] [Google Scholar]
- Scheppach W. Effects of short chain fatty acids on gut morphology and function. Gut. 1994 Jan;35(1 Suppl):S35–S38. doi: 10.1136/gut.35.1_suppl.s35. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Strocchi A., Ellis C. J., Levitt M. D. Use of metabolic inhibitors to study H2 consumption by human feces: evidence for a pathway other than methanogenesis and sulfate reduction. J Lab Clin Med. 1993 Feb;121(2):320–327. [PubMed] [Google Scholar]
- Stupperich E., Konle R. Corrinoid-Dependent Methyl Transfer Reactions Are Involved in Methanol and 3,4-Dimethoxybenzoate Metabolism by Sporomusa ovata. Appl Environ Microbiol. 1993 Sep;59(9):3110–3116. doi: 10.1128/aem.59.9.3110-3116.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wolin M. J., Miller T. L. Bacterial strains from human feces that reduce CO2 to acetic acid. Appl Environ Microbiol. 1993 Nov;59(11):3551–3556. doi: 10.1128/aem.59.11.3551-3556.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zehnder A. J., Wuhrmann K. Titanium (III) citrate as a nontoxic oxidation-reduction buffering system for the culture of obligate anaerobes. Science. 1976 Dec 10;194(4270):1165–1166. doi: 10.1126/science.793008. [DOI] [PubMed] [Google Scholar]