Skip to main content
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1997 Sep;63(9):3577–3584. doi: 10.1128/aem.63.9.3577-3584.1997

Cloning, sequencing, and expression of the gene encoding amylopullulanase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme.

G Dong 1, C Vieille 1, J G Zeikus 1
PMCID: PMC168663  PMID: 9293009

Abstract

The gene encoding the Pyrococcus furiosus hyperthermophilic amylopullulanase (APU) was cloned, sequenced, and expressed in Escherichia coli. The gene encoded a single 827-residue polypeptide with a 26-residue signal peptide. The protein sequence had very low homology (17 to 21% identity) with other APUs and enzymes of the alpha-amylase family. In particular, none of the consensus regions present in the alpha-amylase family could be identified. P. furiosus APU showed similarity to three proteins, including the P. furiosus intracellular alpha-amylase and Dictyoglomus thermophilum alpha-amylase A. The mature protein had a molecular weight of 89,000. The recombinant P. furiosus APU remained folded after denaturation at temperatures of < or = 70 degrees C and showed an apparent molecular weight of 50,000 in sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Denaturating temperatures of above 100 degrees C were required for complete unfolding. The enzyme was extremely thermostable, with an optimal activity at 105 degrees C and pH 5.5. Ca2+ increased the enzyme activity, thermostability, and substrate affinity. The enzyme was highly resistant to chemical denaturing reagents, and its activity increased up to twofold in the presence of surfactants.

Full Text

The Full Text of this article is available as a PDF (839.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Brooks S. P. A simple computer program with statistical tests for the analysis of enzyme kinetics. Biotechniques. 1992 Dec;13(6):906–911. [PubMed] [Google Scholar]
  2. Brown J. W., Daniels C. J., Reeve J. N. Gene structure, organization, and expression in archaebacteria. Crit Rev Microbiol. 1989;16(4):287–338. doi: 10.3109/10408418909105479. [DOI] [PubMed] [Google Scholar]
  3. Brown S. H., Costantino H. R., Kelly R. M. Characterization of Amylolytic Enzyme Activities Associated with the Hyperthermophilic Archaebacterium Pyrococcus furiosus. Appl Environ Microbiol. 1990 Jul;56(7):1985–1991. doi: 10.1128/aem.56.7.1985-1991.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Brown S. H., Kelly R. M. Characterization of Amylolytic Enzymes, Having Both alpha-1,4 and alpha-1,6 Hydrolytic Activity, from the Thermophilic Archaea Pyrococcus furiosus and Thermococcus litoralis. Appl Environ Microbiol. 1993 Aug;59(8):2614–2621. doi: 10.1128/aem.59.8.2614-2621.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. DiRuggiero J., Robb F. T., Jagus R., Klump H. H., Borges K. M., Kessel M., Mai X., Adams M. W. Characterization, cloning, and in vitro expression of the extremely thermostable glutamate dehydrogenase from the hyperthermophilic Archaeon, ES4. J Biol Chem. 1993 Aug 25;268(24):17767–17774. [PubMed] [Google Scholar]
  7. Dong G., Vieille C., Savchenko A., Zeikus J. G. Cloning, sequencing, and expression of the gene encoding extracellular alpha-amylase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme. Appl Environ Microbiol. 1997 Sep;63(9):3569–3576. doi: 10.1128/aem.63.9.3569-3576.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Farber G. K., Petsko G. A. The evolution of alpha/beta barrel enzymes. Trends Biochem Sci. 1990 Jun;15(6):228–234. doi: 10.1016/0968-0004(90)90035-a. [DOI] [PubMed] [Google Scholar]
  9. Glusker J. P. Structural aspects of metal liganding to functional groups in proteins. Adv Protein Chem. 1991;42:1–76. doi: 10.1016/s0065-3233(08)60534-3. [DOI] [PubMed] [Google Scholar]
  10. Hain J., Reiter W. D., Hüdepohl U., Zillig W. Elements of an archaeal promoter defined by mutational analysis. Nucleic Acids Res. 1992 Oct 25;20(20):5423–5428. doi: 10.1093/nar/20.20.5423. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Henikoff S. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene. 1984 Jun;28(3):351–359. doi: 10.1016/0378-1119(84)90153-7. [DOI] [PubMed] [Google Scholar]
  12. Hyun H. H., Zeikus J. G. General Biochemical Characterization of Thermostable Pullulanase and Glucoamylase from Clostridium thermohydrosulfuricum. Appl Environ Microbiol. 1985 May;49(5):1168–1173. doi: 10.1128/aem.49.5.1168-1173.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Laderman K. A., Asada K., Uemori T., Mukai H., Taguchi Y., Kato I., Anfinsen C. B. Alpha-amylase from the hyperthermophilic archaebacterium Pyrococcus furiosus. Cloning and sequencing of the gene and expression in Escherichia coli. J Biol Chem. 1993 Nov 15;268(32):24402–24407. [PubMed] [Google Scholar]
  14. Matsuura Y., Kusunoki M., Harada W., Kakudo M. Structure and possible catalytic residues of Taka-amylase A. J Biochem. 1984 Mar;95(3):697–702. doi: 10.1093/oxfordjournals.jbchem.a134659. [DOI] [PubMed] [Google Scholar]
  15. Melasniemi H. Purification and some properties of the extracellular alpha-amylase-pullulanase produced by Clostridium thermohydrosulfuricum. Biochem J. 1988 Mar 15;250(3):813–818. doi: 10.1042/bj2500813. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Ramesh M. V., Podkovyrov S. M., Lowe S. E., Zeikus J. G. Cloning and sequencing of the Thermoanaerobacterium saccharolyticum B6A-RI apu gene and purification and characterization of the amylopullulanase from Escherichia coli. Appl Environ Microbiol. 1994 Jan;60(1):94–101. doi: 10.1128/aem.60.1.94-101.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Rost B., Sander C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 1994 May;19(1):55–72. doi: 10.1002/prot.340190108. [DOI] [PubMed] [Google Scholar]
  18. Rost B., Sander C. Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol. 1993 Jul 20;232(2):584–599. doi: 10.1006/jmbi.1993.1413. [DOI] [PubMed] [Google Scholar]
  19. Rost B., Sander C., Schneider R. PHD--an automatic mail server for protein secondary structure prediction. Comput Appl Biosci. 1994 Feb;10(1):53–60. doi: 10.1093/bioinformatics/10.1.53. [DOI] [PubMed] [Google Scholar]
  20. Rüdiger A., Jorgensen P. L., Antranikian G. Isolation and characterization of a heat-stable pullulanase from the hyperthermophilic archaeon Pyrococcus woesei after cloning and expression of its gene in Escherichia coli. Appl Environ Microbiol. 1995 Feb;61(2):567–575. doi: 10.1128/aem.61.2.567-575.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Saha B. C., Mathupala S. P., Zeikus J. G. Purification and characterization of a highly thermostable novel pullulanase from Clostridium thermohydrosulfuricum. Biochem J. 1988 Jun 1;252(2):343–348. doi: 10.1042/bj2520343. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Tiboni O., Cammarano P., Sanangelantoni A. M. Cloning and sequencing of the gene encoding glutamine synthetase I from the archaeum Pyrococcus woesei: anomalous phylogenies inferred from analysis of archaeal and bacterial glutamine synthetase I sequences. J Bacteriol. 1993 May;175(10):2961–2969. doi: 10.1128/jb.175.10.2961-2969.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Vieille C., Burdette D. S., Zeikus J. G. Thermozymes. Biotechnol Annu Rev. 1996;2:1–83. doi: 10.1016/s1387-2656(08)70006-1. [DOI] [PubMed] [Google Scholar]
  24. Voorhorst W. G., Eggen R. I., Luesink E. J., de Vos W. M. Characterization of the celB gene coding for beta-glucosidase from the hyperthermophilic archaeon Pyrococcus furiosus and its expression and site-directed mutation in Escherichia coli. J Bacteriol. 1995 Dec;177(24):7105–7111. doi: 10.1128/jb.177.24.7105-7111.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Watson M. E. Compilation of published signal sequences. Nucleic Acids Res. 1984 Jul 11;12(13):5145–5164. doi: 10.1093/nar/12.13.5145. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Zwickl P., Fabry S., Bogedain C., Haas A., Hensel R. Glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei: characterization of the enzyme, cloning and sequencing of the gene, and expression in Escherichia coli. J Bacteriol. 1990 Aug;172(8):4329–4338. doi: 10.1128/jb.172.8.4329-4338.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES