Skip to main content
Proceedings of the Royal Society B: Biological Sciences logoLink to Proceedings of the Royal Society B: Biological Sciences
. 2002 Aug 7;269(1500):1563–1569. doi: 10.1098/rspb.2002.2050

A molecular phylogeny of ichthyophiid caecilians (Amphibia: Gymnophiona: Ichthyophiidae): out of India or out of South East Asia?

David J Gower 1, Alex Kupfer 1, Oommen V Oommen 1, Werner Himstedt 1, Ronald A Nussbaum 1, Simon P Loader 1, Bronwen Presswell 1, Hendrik Müller 1, Sharath B Krishna 1, Renaud Boistel 1, Mark Wilkinson 1
PMCID: PMC1691064  PMID: 12184826

Abstract

Recent molecular phylogenetic studies indicate that the rafting Indian plate harboured several isolated vertebrate lineages between ca. 130 and 56 Myr ago that dispersed and diversified 'out of India' following accretion with Eurasia. A single family of the amphibian order Gymnophiona, the Ichthyophiidae, presently occurs on the Indian plate and across much of South East Asia. Ichthyophiid phylogeny is investigated in order to test competing out of India and out of South East Asia hypotheses for their distribution. Partial sequences of mitochondrial 12S and 16S rRNA and cytochrome b genes for 20 ichthyophiids and proximate outgroups were assembled. Parsimony, maximum-likelihood and distance analyses all recover optimum trees in which uraeotyphlids plus Ichthyophis cf. malabarensis are the sister taxa to all other Ichthyophis, among which the South East Asian taxa are monophyletic. Tree topology and branch lengths indicate that the Indian lineages are more basal and older, and thus are more consistent with the hypothesis that ichthyophiids dispersed from the Indian subcontinent into South East Asia. The estimated relationships also support monophyly of Sri Lankan Ichthyophis, and non-monophyly of striped and unstriped Ichthyophis species groups. Mitochondrial DNA sequences provide evidence that should assist current problematic areas of caecilian taxonomy.

Full Text

The Full Text of this article is available as a PDF (134.2 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bossuyt F., Milinkovitch M. C. Amphibians as indicators of early tertiary "out-of-India" dispersal of vertebrates. Science. 2001 Apr 6;292(5514):93–95. doi: 10.1126/science.1058875. [DOI] [PubMed] [Google Scholar]
  2. Cooper A., Lalueza-Fox C., Anderson S., Rambaut A., Austin J., Ward R. Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature. 2001 Feb 8;409(6821):704–707. doi: 10.1038/35055536. [DOI] [PubMed] [Google Scholar]
  3. Feller A. E., Hedges S. B. Molecular evidence for the early history of living amphibians. Mol Phylogenet Evol. 1998 Jun;9(3):509–516. doi: 10.1006/mpev.1998.0500. [DOI] [PubMed] [Google Scholar]
  4. Kocher T. D., Thomas W. K., Meyer A., Edwards S. V., Päbo S., Villablanca F. X., Wilson A. C. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci U S A. 1989 Aug;86(16):6196–6200. doi: 10.1073/pnas.86.16.6196. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Macey J. R., Schulte J. A., 2nd, Larson A., Ananjeva N. B., Wang Y., Pethiyagoda R., Rastegar-Pouyani N., Papenfuss T. J. Evaluating trans-tethys migration: an example using acrodont lizard phylogenetics. Syst Biol. 2000 Jun;49(2):233–256. doi: 10.1093/sysbio/49.2.233. [DOI] [PubMed] [Google Scholar]
  6. Meyer A., Wilson A. C. Origin of tetrapods inferred from their mitochondrial DNA affiliation to lungfish. J Mol Evol. 1990 Nov;31(5):359–364. doi: 10.1007/BF02106050. [DOI] [PubMed] [Google Scholar]
  7. Posada D., Crandall K. A. MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998;14(9):817–818. doi: 10.1093/bioinformatics/14.9.817. [DOI] [PubMed] [Google Scholar]
  8. Rodríguez F., Oliver J. L., Marín A., Medina J. R. The general stochastic model of nucleotide substitution. J Theor Biol. 1990 Feb 22;142(4):485–501. doi: 10.1016/s0022-5193(05)80104-3. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the Royal Society B: Biological Sciences are provided here courtesy of The Royal Society

RESOURCES