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. 1981 Feb;37(2):710–720. doi: 10.1128/jvi.37.2.710-720.1981

Linkage map of the fragments of herpesvirus papio DNA.

Y S Lee, A Tanaka, R Y Lau, M Nonoyama, H Rabin
PMCID: PMC171058  PMID: 6261015

Abstract

Herpesvirus papio (HVP), an Epstein-Barr-like virus, causes lymphoblastoid disease in baboons. The physical map of HVP DNA was constructed for the fragments produced by cleavage of HVP DNA with restriction endonucleases EcoRI, HindIII, SalI, and PvuI, which produced 12, 12, 10, and 4 fragments, respectively. The total molecular size of HVP DNA was calculated as close to 110 megadaltons. The following methods were used for construction of the map; (i) fragments near the ends of HVP DNA were identified by treating viral DNA with lambda exonuclease before restriction enzyme digestion; (ii) fragments containing nucleotide sequences in common with fragments from the second enzyme digest of HVP DNA were examined by Southern blot hybridization; and (iii) the location of some fragments was determined by isolating individual fragments from agarose gels and redigesting the isolated fragments with a second restriction enzyme. Terminal heterogeneity and internal repeats were found to be unique features of HVP DNA molecule. One to five repeats of 0.8 megadaltons were found at both terminal ends. Although the repeats of both ends shared a certain degree of homology, it was not determined whether they were identical repeats. The internal repeat sequence of HVP DNA was found in the EcoRI-C region, which extended from 8.4 to 23 megadaltons from the left end of the molecule. The average number of the repeats was calculated to be seven, and the molecular size was determined to be 1.8 megadaltons. Similar unique features have been reported in EBV DNA (D. Given and E. Kieff, J. Virol. 28:524-542, 1978).

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Selected References

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  1. Agrba V. Z., Yakovleva L. A., Lapin B. A., Sangulija I. A., Timanovskaya V. V., Markarjan D. S., Chuvirov G. N., Salmanova E. A. The establishment of continuous lymphoblastoid suspension cell cultures from hematopoietic organs of baboon (Papio hamadryas) with malignant lymphoma. Exp Pathol (Jena) 1975;10(5-6):318–332. doi: 10.1016/s0014-4908(75)80040-8. [DOI] [PubMed] [Google Scholar]
  2. Böcker J. F., Tiedemann K. H., Bornkamm G. W., zur Hausen H. Characterization of an EBV-like virus from African green monkey lymphoblasts. Virology. 1980 Feb;101(1):291–295. doi: 10.1016/0042-6822(80)90506-1. [DOI] [PubMed] [Google Scholar]
  3. Danna K. J., Sack G. H., Jr, Nathans D. Studies of simian virus 40 DNA. VII. A cleavage map of the SV40 genome. J Mol Biol. 1973 Aug 5;78(2):363–376. doi: 10.1016/0022-2836(73)90122-8. [DOI] [PubMed] [Google Scholar]
  4. Dawid I. B. DNA-DNA hybridization on membrane filters: a convenient method using formamide. Biochim Biophys Acta. 1977 Jul 15;477(2):191–194. doi: 10.1016/0005-2787(77)90235-0. [DOI] [PubMed] [Google Scholar]
  5. Deinhardt F., Falk L., Wolfe L. G., Schudel A., Nonoyama M., Lai P., Lapin B., Yakovleva L. Susceptibility of marmosets to Epstein-Barr virus-like baboon herpesviruses. Primates Med. 1978;10:163–170. [PubMed] [Google Scholar]
  6. Djatchenko A. G., Kakubava V. V., Lapin B. A., Agrba V. Z., Yakovleva L. A., Samilchuk E. I. Continuous lymphoblastoid suspension cultures from cells of haematopoietic organs of baboons with malignant lymphoma--biological characterization and biological properties of the herpes virus associated with culture cells. Exp Pathol (Jena) 1976;12(3-4):163–168. doi: 10.1016/s0014-4908(76)80039-7. [DOI] [PubMed] [Google Scholar]
  7. Gerber P., Kalter S. S., Schidlovsky G., Peterson W. D., Jr, Daniel M. D. Biologic and antigenic characteristics of Epstein-Barr virus-related Herpesviruses of chimpanzees and baboons. Int J Cancer. 1977 Sep 15;20(3):448–459. doi: 10.1002/ijc.2910200318. [DOI] [PubMed] [Google Scholar]
  8. Gerber P., Pritchett R. F., Kieff E. D. Antigens and DNA of a chimpanzee agent related to Epstein-Barr virus. J Virol. 1976 Sep;19(3):1090–1099. doi: 10.1128/jvi.19.3.1090-1099.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Given D., Kieff E. DNA of Epstein-Barr virus. IV. Linkage map of restriction enzyme fragments of the B95-8 and W91 strains of Epstein-Barr Virus. J Virol. 1978 Nov;28(2):524–542. doi: 10.1128/jvi.28.2.524-542.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Hamlett N. V., Lange-Gufstafson B., Rhoades M. Physical map of the bacteriophage T5 genome based on the cleavage products of the restriction endonucleases SalI, SmaI, BamI, and HpaI. J Virol. 1977 Oct;24(1):249–260. doi: 10.1128/jvi.24.1.249-260.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hayward G. S., Jacob R. J., Wadsworth S. C., Roizman B. Anatomy of herpes simplex virus DNA: evidence for four populations of molecules that differ in the relative orientations of their long and short components. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4243–4247. doi: 10.1073/pnas.72.11.4243. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hayward S. D., Nogee L., Hayward G. S. Organization of repeated regions within the Epstein-Barr virus DNA molecule. J Virol. 1980 Jan;33(1):507–521. doi: 10.1128/jvi.33.1.507-521.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Heller M., Gerber P., Kieff E. Herpesvirus papio DNA is similar in organization to Epstein-Barr virus DNA. J Virol. 1981 Feb;37(2):698–709. doi: 10.1128/jvi.37.2.698-709.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Heller M., Kieff E. Colinearity between the DNAs of Epstein-Barr virus and herpesvirus papio. J Virol. 1981 Feb;37(2):821–826. doi: 10.1128/jvi.37.2.821-826.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lee Y. S., Yajima Y., Nonoyama M. Mechanism of infection by Epstein-Barr virus. II. Comparison of viral DNA from HR-1 and superinfected Raji cells by restriction enzymes. Virology. 1977 Aug;81(1):17–24. doi: 10.1016/0042-6822(77)90054-x. [DOI] [PubMed] [Google Scholar]
  16. Neubauer R. H., Rabin H., Strnad B. C., Nonoyama M., Nelson-Rees W. A. Establishment of a lymphoblastoid cell line and isolation of an Epstein-Barr-related virus of gorilla origin. J Virol. 1979 Sep;31(3):845–848. doi: 10.1128/jvi.31.3.845-848.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Nonoyama M., Pagano J. S. Homology between Epstein-Barr virus DNA and viral DNA from Burkitt's lymphoma and nasopharyngeal carcinoma determined by DNA-DNA reassociation kinetics. Nature. 1973 Mar 2;242(5392):44–47. doi: 10.1038/242044a0. [DOI] [PubMed] [Google Scholar]
  18. Pettersson U., Mulder C., Deluis H., Sharp P. A. Cleavage of adenovirus type 2 DNA into six unique fragments by endonuclease R-RI. Proc Natl Acad Sci U S A. 1973 Jan;70(1):200–204. doi: 10.1073/pnas.70.1.200. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Rabin H., Neubauer R. H., Hopkins R. F., 3rd, Dzhikidze E. K., Shevtsova Z. V., Lapin B. A. Transforming activity and antigenicity of an Epstein-Barr-like virus from lymphoblastoid cell lines of baboons with lymphoid disease. Intervirology. 1977;8(4):240–249. doi: 10.1159/000148899. [DOI] [PubMed] [Google Scholar]
  20. Rabin H., Neubauer R. H., Hopkins R. F., 3rd, Nonoyama M. Further characterization of a herpesvirus-positive orang-utan cell line and comparative aspects of in vitro transformation with lymphotropic old world primate herpesviruses. Int J Cancer. 1978 Jun 15;21(6):762–767. doi: 10.1002/ijc.2910210614. [DOI] [PubMed] [Google Scholar]
  21. Rasheed S., Rongey R. W., Bruszweski J., Nelson-Rees W. A., Rabin H., Neubauer R. H., Esra G., Gardner M. B. Establishment of a cell line with associated Epstein-Barr-like virus from a leukemic orangutan. Science. 1977 Oct 28;198(4315):407–409. doi: 10.1126/science.198878. [DOI] [PubMed] [Google Scholar]
  22. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  23. Rymo L., Forsblom S. Cleavage of Epstein-Barr virus DNA by restriction endonucleases EcoRI, HindIII and BamI. Nucleic Acids Res. 1978 Apr;5(4):1387–1402. doi: 10.1093/nar/5.4.1387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Rymo L., Lindahl T., Adams A. Sites of sequence variability in Epstein-Barr virus DNA from different sources. Proc Natl Acad Sci U S A. 1979 Jun;76(6):2794–2798. doi: 10.1073/pnas.76.6.2794. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  26. Sugden B. Comparison of Epstein-Barr viral DNAs in Burkitt lymphoma biopsy cells and in cells clonally transformed in vitro. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4651–4655. doi: 10.1073/pnas.74.10.4651. [DOI] [PMC free article] [PubMed] [Google Scholar]

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