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. 1995 Jun;63(6):2185–2193. doi: 10.1128/iai.63.6.2185-2193.1995

Isolation of the Helicobacter pylori recA gene and involvement of the recA region in resistance to low pH.

S A Thompson 1, M J Blaser 1
PMCID: PMC173284  PMID: 7768597

Abstract

To understand the potential roles of the important DNA repair protein RecA in Helicobacter pylori pathogenesis, we cloned the recA gene from H. pylori 84-183. Degenerate PCR primers based on conserved RecA protein regions were used to amplify a portion of H. pylori recA, which was used as a probe to isolate the full-length recA gene from H. pylori genomic libraries. The H. pylori recA gene encoded a protein of 347 amino acids with a molecular mass of 37.6 kDa. As expected, H. pylori RecA was highly similar to other RecA proteins and most closely resembled that of Campylobacter jejuni (75% identity). Immediately downstream of recA was an open reading frame whose predicted product showed 58% identity to the Bacillus subtilis enolase protein. recA and eno were disrupted in H. pylori 84-183 by insertion of antibiotic resistance genes. Reverse transcription-PCR demonstrated that recA and eno were cotranscribed and that insertion of the kanamycin resistance gene into recA had polar effects on expression of the downstream eno. The H. pylori recA mutants were severely impaired in their ability to survive treatment with UV light and methyl methanesulfonate and with the antimicrobial agents ciprofloxacin and metronidazole. The eno mutant had sensitivities to UV light and metronidazole intermediate to those of wild-type and recA strains, suggesting that truncation of the recA-eno transcript resulted in lowered recA expression. For survival at low pH, a recA mutant was approximately 10-fold more sensitive than strain 84-183, while the eno mutant demonstrated intermediate susceptibility. This difference occurred in the presence or absence of urea, implying the involvement of a gene in the recA region in an acid resistance mechanism distinct from that mediated by urease.

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Selected References

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  1. Akopyanz N., Bukanov N. O., Westblom T. U., Berg D. E. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori. Nucleic Acids Res. 1992 Dec 11;20(23):6221–6225. doi: 10.1093/nar/20.23.6221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
  3. Biswas G. D., Graves J., Schwalbe R., Sparling P. F. Construction of isogenic gonococcal strains varying in the presence of a 4.2-kilobase cryptic plasmid. J Bacteriol. 1986 Aug;167(2):685–694. doi: 10.1128/jb.167.2.685-694.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Blaser M. J., Parsonnet J. Parasitism by the "slow" bacterium Helicobacter pylori leads to altered gastric homeostasis and neoplasia. J Clin Invest. 1994 Jul;94(1):4–8. doi: 10.1172/JCI117336. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Buchmeier N. A., Lipps C. J., So M. Y., Heffron F. Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages. Mol Microbiol. 1993 Mar;7(6):933–936. doi: 10.1111/j.1365-2958.1993.tb01184.x. [DOI] [PubMed] [Google Scholar]
  6. Clayton C. L., Kleanthous H., Morgan D. D., Puckey L., Tabaqchali S. Rapid fingerprinting of Helicobacter pylori by polymerase chain reaction and restriction fragment length polymorphism analysis. J Clin Microbiol. 1993 Jun;31(6):1420–1425. doi: 10.1128/jcm.31.6.1420-1425.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Cover T. L., Dooley C. P., Blaser M. J. Characterization of and human serologic response to proteins in Helicobacter pylori broth culture supernatants with vacuolizing cytotoxin activity. Infect Immun. 1990 Mar;58(3):603–610. doi: 10.1128/iai.58.3.603-610.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Cussac V., Ferrero R. L., Labigne A. Expression of Helicobacter pylori urease genes in Escherichia coli grown under nitrogen-limiting conditions. J Bacteriol. 1992 Apr;174(8):2466–2473. doi: 10.1128/jb.174.8.2466-2473.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Davis E. O., Sedgwick S. G., Colston M. J. Novel structure of the recA locus of Mycobacterium tuberculosis implies processing of the gene product. J Bacteriol. 1991 Sep;173(18):5653–5662. doi: 10.1128/jb.173.18.5653-5662.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Dunkin S. M., Wood D. O. Isolation and characterization of the Rickettsia prowazekii recA gene. J Bacteriol. 1994 Mar;176(6):1777–1781. doi: 10.1128/jb.176.6.1777-1781.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Duwat P., Ehrlich S. D., Gruss A. A general method for cloning recA genes of gram-positive bacteria by polymerase chain reaction. J Bacteriol. 1992 Aug;174(15):5171–5175. doi: 10.1128/jb.174.15.5171-5175.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Dybvig K., Hollingshead S. K., Heath D. G., Clewell D. B., Sun F., Woodard A. Degenerate oligonucleotide primers for enzymatic amplification of recA sequences from gram-positive bacteria and mycoplasmas. J Bacteriol. 1992 Apr;174(8):2729–2732. doi: 10.1128/jb.174.8.2729-2732.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Eaton K. A., Morgan D. R., Krakowka S. Motility as a factor in the colonisation of gnotobiotic piglets by Helicobacter pylori. J Med Microbiol. 1992 Aug;37(2):123–127. doi: 10.1099/00222615-37-2-123. [DOI] [PubMed] [Google Scholar]
  15. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  16. Foster J. W., Bearson B. Acid-sensitive mutants of Salmonella typhimurium identified through a dinitrophenol lethal screening strategy. J Bacteriol. 1994 May;176(9):2596–2602. doi: 10.1128/jb.176.9.2596-2602.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Foxall P. A., Hu L. T., Mobley H. L. Use of polymerase chain reaction-amplified Helicobacter pylori urease structural genes for differentiation of isolates. J Clin Microbiol. 1992 Mar;30(3):739–741. doi: 10.1128/jcm.30.3.739-741.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Fujimoto S., Marshall B., Blaser M. J. PCR-based restriction fragment length polymorphism typing of Helicobacter pylori. J Clin Microbiol. 1994 Feb;32(2):331–334. doi: 10.1128/jcm.32.2.331-334.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Fyfe J. A., Davies J. K. Nucleotide sequence and expression in Escherichia coli of the recA gene of Neisseria gonorrhoeae. Gene. 1990 Sep 1;93(1):151–156. doi: 10.1016/0378-1119(90)90151-g. [DOI] [PubMed] [Google Scholar]
  20. Gish W., States D. J. Identification of protein coding regions by database similarity search. Nat Genet. 1993 Mar;3(3):266–272. doi: 10.1038/ng0393-266. [DOI] [PubMed] [Google Scholar]
  21. Goerlich O., Quillardet P., Hofnung M. Induction of the SOS response by hydrogen peroxide in various Escherichia coli mutants with altered protection against oxidative DNA damage. J Bacteriol. 1989 Nov;171(11):6141–6147. doi: 10.1128/jb.171.11.6141-6147.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Goldberg I., Mekalanos J. J. Cloning of the Vibrio cholerae recA gene and construction of a Vibrio cholerae recA mutant. J Bacteriol. 1986 Mar;165(3):715–722. doi: 10.1128/jb.165.3.715-722.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Gomelsky M., Gak E., Chistoserdov A., Bolotin A., Tsygankov Y. D. Cloning, sequence and expression in Escherichia coli of the Methylobacillus flagellatum recA gene. Gene. 1990 Sep 28;94(1):69–75. doi: 10.1016/0378-1119(90)90469-8. [DOI] [PubMed] [Google Scholar]
  24. Goodman H. J., Woods D. R. Molecular analysis of the Bacteroides fragilis recA gene. Gene. 1990 Sep 28;94(1):77–82. doi: 10.1016/0378-1119(90)90470-c. [DOI] [PubMed] [Google Scholar]
  25. Guerry P., Pope P. M., Burr D. H., Leifer J., Joseph S. W., Bourgeois A. L. Development and characterization of recA mutants of Campylobacter jejuni for inclusion in attenuated vaccines. Infect Immun. 1994 Feb;62(2):426–432. doi: 10.1128/iai.62.2.426-432.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Haas A., Goebel W. Microbial strategies to prevent oxygen-dependent killing by phagocytes. Free Radic Res Commun. 1992;16(3):137–157. doi: 10.3109/10715769209049167. [DOI] [PubMed] [Google Scholar]
  27. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983 Jun 5;166(4):557–580. doi: 10.1016/s0022-2836(83)80284-8. [DOI] [PubMed] [Google Scholar]
  28. Hassett D. J., Charniga L., Bean K., Ohman D. E., Cohen M. S. Response of Pseudomonas aeruginosa to pyocyanin: mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase. Infect Immun. 1992 Feb;60(2):328–336. doi: 10.1128/iai.60.2.328-336.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Hassett D. J., Cohen M. S. Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells. FASEB J. 1989 Dec;3(14):2574–2582. doi: 10.1096/fasebj.3.14.2556311. [DOI] [PubMed] [Google Scholar]
  30. Hazell S. L., Evans D. J., Jr, Graham D. Y. Helicobacter pylori catalase. J Gen Microbiol. 1991 Jan;137(1):57–61. doi: 10.1099/00221287-137-1-57. [DOI] [PubMed] [Google Scholar]
  31. Irani M. H., Maitra P. K. Properties of Escherichia coli mutants deficient in enzymes of glycolysis. J Bacteriol. 1977 Nov;132(2):398–410. doi: 10.1128/jb.132.2.398-410.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Knight R. C., Skolimowski I. M., Edwards D. I. The interaction of reduced metronidazole with DNA. Biochem Pharmacol. 1978;27(17):2089–2093. doi: 10.1016/0006-2952(78)90277-0. [DOI] [PubMed] [Google Scholar]
  33. Koomey J. M., Falkow S. Cloning of the recA gene of Neisseria gonorrhoeae and construction of gonococcal recA mutants. J Bacteriol. 1987 Feb;169(2):790–795. doi: 10.1128/jb.169.2.790-795.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Kraft R., Tardiff J., Krauter K. S., Leinwand L. A. Using mini-prep plasmid DNA for sequencing double stranded templates with Sequenase. Biotechniques. 1988 Jun;6(6):544-6, 549. [PubMed] [Google Scholar]
  35. Labigne-Roussel A., Courcoux P., Tompkins L. Gene disruption and replacement as a feasible approach for mutagenesis of Campylobacter jejuni. J Bacteriol. 1988 Apr;170(4):1704–1708. doi: 10.1128/jb.170.4.1704-1708.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Labigne A., Cussac V., Courcoux P. Shuttle cloning and nucleotide sequences of Helicobacter pylori genes responsible for urease activity. J Bacteriol. 1991 Mar;173(6):1920–1931. doi: 10.1128/jb.173.6.1920-1931.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Lee A., Fox J., Hazell S. Pathogenicity of Helicobacter pylori: a perspective. Infect Immun. 1993 May;61(5):1601–1610. doi: 10.1128/iai.61.5.1601-1610.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Leunk R. D., Johnson P. T., David B. C., Kraft W. G., Morgan D. R. Cytotoxic activity in broth-culture filtrates of Campylobacter pylori. J Med Microbiol. 1988 Jun;26(2):93–99. doi: 10.1099/00222615-26-2-93. [DOI] [PubMed] [Google Scholar]
  39. Leying H., Suerbaum S., Geis G., Haas R. Cloning and genetic characterization of a Helicobacter pylori flagellin gene. Mol Microbiol. 1992 Oct;6(19):2863–2874. doi: 10.1111/j.1365-2958.1992.tb01466.x. [DOI] [PubMed] [Google Scholar]
  40. Lopez C. R., Owen R. J., Desai M. Differentiation between isolates of Helicobacter pylori by PCR-RFLP analysis of urease A and B genes and comparison with ribosomal RNA gene patterns. FEMS Microbiol Lett. 1993 Jun 1;110(1):37–43. doi: 10.1111/j.1574-6968.1993.tb06292.x. [DOI] [PubMed] [Google Scholar]
  41. Marshall B. J., Barrett L. J., Prakash C., McCallum R. W., Guerrant R. L. Urea protects Helicobacter (Campylobacter) pylori from the bactericidal effect of acid. Gastroenterology. 1990 Sep;99(3):697–702. doi: 10.1016/0016-5085(90)90957-3. [DOI] [PubMed] [Google Scholar]
  42. McGowan C. C., Cover T. L., Blaser M. J. The proton pump inhibitor omeprazole inhibits acid survival of Helicobacter pylori by a urease-independent mechanism. Gastroenterology. 1994 Nov;107(5):1573–1578. doi: 10.1016/0016-5085(94)90582-7. [DOI] [PubMed] [Google Scholar]
  43. Mendz G. L., Hazell S. L., Burns B. P. Glucose utilization and lactate production by Helicobacter pylori. J Gen Microbiol. 1993 Dec;139(12):3023–3028. doi: 10.1099/00221287-139-12-3023. [DOI] [PubMed] [Google Scholar]
  44. Michiels J., Vande Broek A., Vanderleyden J. Molecular cloning and nucleotide sequence of the Rhizobium phaseoli recA gene. Mol Gen Genet. 1991 Sep;228(3):486–490. doi: 10.1007/BF00260644. [DOI] [PubMed] [Google Scholar]
  45. Mobley H. L., Hu L. T., Foxal P. A. Helicobacter pylori urease: properties and role in pathogenesis. Scand J Gastroenterol Suppl. 1991;187:39–46. [PubMed] [Google Scholar]
  46. Newbury S. F., Smith N. H., Higgins C. F. Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell. 1987 Dec 24;51(6):1131–1143. doi: 10.1016/0092-8674(87)90599-x. [DOI] [PubMed] [Google Scholar]
  47. Pérez-Pérez G. I., Olivares A. Z., Cover T. L., Blaser M. J. Characteristics of Helicobacter pylori variants selected for urease deficiency. Infect Immun. 1992 Sep;60(9):3658–3663. doi: 10.1128/iai.60.9.3658-3663.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Quivey R. G., Jr, Faustoferri R. C. In vivo inactivation of the Streptococcus mutans recA gene mediated by PCR amplification and cloning of a recA DNA fragment. Gene. 1992 Jul 1;116(1):35–42. doi: 10.1016/0378-1119(92)90626-z. [DOI] [PubMed] [Google Scholar]
  49. Ramesar R. S., Abratt V., Woods D. R., Rawlings D. E. Nucleotide sequence and expression of a cloned Thiobacillus ferrooxidans recA gene in Escherichia coli. Gene. 1989 May 15;78(1):1–8. doi: 10.1016/0378-1119(89)90308-9. [DOI] [PubMed] [Google Scholar]
  50. Ridder R., Marquardt R., Esser K. Molecular cloning and characterization of the recA gene of Methylomonas clara and construction of recA deficient mutant. Appl Microbiol Biotechnol. 1991 Apr;35(1):23–31. doi: 10.1007/BF00180631. [DOI] [PubMed] [Google Scholar]
  51. Roca A. I., Cox M. M. The RecA protein: structure and function. Crit Rev Biochem Mol Biol. 1990;25(6):415–456. doi: 10.3109/10409239009090617. [DOI] [PubMed] [Google Scholar]
  52. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Segal E. D., Tompkins L. S. Transformation of Helicobacter pylori by electroporation. Biotechniques. 1993 Feb;14(2):225–226. [PubMed] [Google Scholar]
  54. Sioud M., Forterre P. Ciprofloxacin and etoposide (VP16) produce a similar pattern of DNA cleavage in a plasmid of an archaebacterium. Biochemistry. 1989 May 2;28(9):3638–3641. doi: 10.1021/bi00435a002. [DOI] [PubMed] [Google Scholar]
  55. Spiegelhalder C., Gerstenecker B., Kersten A., Schiltz E., Kist M. Purification of Helicobacter pylori superoxide dismutase and cloning and sequencing of the gene. Infect Immun. 1993 Dec;61(12):5315–5325. doi: 10.1128/iai.61.12.5315-5325.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  56. Staden R. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucleic Acids Res. 1982 Aug 11;10(15):4731–4751. doi: 10.1093/nar/10.15.4731. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. Story R. M., Bishop D. K., Kleckner N., Steitz T. A. Structural relationship of bacterial RecA proteins to recombination proteins from bacteriophage T4 and yeast. Science. 1993 Mar 26;259(5103):1892–1896. doi: 10.1126/science.8456313. [DOI] [PubMed] [Google Scholar]
  58. Tatum F. M., Morfitt D. C., Halling S. M. Construction of a Brucella abortus RecA mutant and its survival in mice. Microb Pathog. 1993 Mar;14(3):177–185. doi: 10.1006/mpat.1993.1018. [DOI] [PubMed] [Google Scholar]
  59. Taylor D. E. Genetics of Campylobacter and Helicobacter. Annu Rev Microbiol. 1992;46:35–64. doi: 10.1146/annurev.mi.46.100192.000343. [DOI] [PubMed] [Google Scholar]
  60. Tummuru M. K., Cover T. L., Blaser M. J. Cloning and expression of a high-molecular-mass major antigen of Helicobacter pylori: evidence of linkage to cytotoxin production. Infect Immun. 1993 May;61(5):1799–1809. doi: 10.1128/iai.61.5.1799-1809.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  61. Tytgat G. N. Does the stomach adapt to Helicobacter pylori? Scand J Gastroenterol Suppl. 1992;193:28–32. doi: 10.3109/00365529209096002. [DOI] [PubMed] [Google Scholar]
  62. Vosman B., Hellingwerf K. J. Molecular cloning and functional characterization of a recA analog from Pseudomonas stutzeri and construction of a P. stutzeri recA mutant. Antonie Van Leeuwenhoek. 1991 Feb;59(2):115–123. doi: 10.1007/BF00445655. [DOI] [PubMed] [Google Scholar]
  63. Walker G. C. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev. 1984 Mar;48(1):60–93. doi: 10.1128/mr.48.1.60-93.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  64. Wang Y., Roos K. P., Taylor D. E. Transformation of Helicobacter pylori by chromosomal metronidazole resistance and by a plasmid with a selectable chloramphenicol resistance marker. J Gen Microbiol. 1993 Oct;139(10):2485–2493. doi: 10.1099/00221287-139-10-2485. [DOI] [PubMed] [Google Scholar]
  65. Wardhan H., McPherson M. J., Harris C. A., Sharma E., Sastry G. R. Molecular analysis of the recA gene of Agrobacterium tumefaciens C58. Gene. 1992 Nov 2;121(1):133–136. doi: 10.1016/0378-1119(92)90171-k. [DOI] [PubMed] [Google Scholar]
  66. Wolfson J. S., Hooper D. C. The fluoroquinolones: structures, mechanisms of action and resistance, and spectra of activity in vitro. Antimicrob Agents Chemother. 1985 Oct;28(4):581–586. doi: 10.1128/aac.28.4.581. [DOI] [PMC free article] [PubMed] [Google Scholar]
  67. Yao R., Alm R. A., Trust T. J., Guerry P. Construction of new Campylobacter cloning vectors and a new mutational cat cassette. Gene. 1993 Aug 16;130(1):127–130. doi: 10.1016/0378-1119(93)90355-7. [DOI] [PubMed] [Google Scholar]
  68. Young R. A., Davis R. W. Efficient isolation of genes by using antibody probes. Proc Natl Acad Sci U S A. 1983 Mar;80(5):1194–1198. doi: 10.1073/pnas.80.5.1194. [DOI] [PMC free article] [PubMed] [Google Scholar]

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