Abstract
Glutaric aciduria type 1 (GA1), resulting from the genetic deficiency of glutaryl-CoA dehydrogenase (GDH), is a relatively common cause of acute metabolic brain damage in infants. Encephalopathic crises may be prevented by carnitine supplementation and diet, but diagnosis can be difficult as some patients do not show the typical excretion of large amounts of glutaric and 3-hydroxyglutaric acids in the urine. We present a rapid and efficient denaturing gradient gel electrophoresis (DGGE) method for the identification of mutations in the glutaryl-CoA dehydrogenase (GCDH) gene that may be used for the molecular diagnosis of GA1 in a routine setting. Using this technique, we identified mutations on both alleles in 48 patients with confirmed GDH deficiency, while no mutations were detected in other patients with clinical suspicion of GA1 but normal enzyme studies. There was a total of 38 different mutations; 27 mutations were found in single patients only, and 21 mutations have not been previously reported. Fourteen mutations involved hypermutable CpG sites. The commonest GA1 mutation in Europeans is R402W, which accounts for almost 40% of alleles in patients of German origin. GCDH gene haplotypes were determined through the analysis of polymorphic markers in all families, and three CpG mutations were associated with different haplotypes, possibly reflecting independent recurrence. The high sensitivity of the DGGE method allows the rapid and cost efficient diagnosis of GA1 in instances where enzyme analyses are not available or feasible, despite the marked heterogeneity of the disease. Keywords: glutaric aciduria type I; glutaryl-CoA dehydrogenase; mutation; denaturing gradient gel electrophoresis
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- Barić I., Zschocke J., Christensen E., Duran M., Goodman S. I., Leonard J. V., Müller E., Morton D. H., Superti-Furga A., Hoffmann G. F. Diagnosis and management of glutaric aciduria type I. J Inherit Metab Dis. 1998 Jun;21(4):326–340. doi: 10.1023/a:1005390105171. [DOI] [PubMed] [Google Scholar]
- Biery B. J., Stein D. E., Morton D. H., Goodman S. I. Gene structure and mutations of glutaryl-coenzyme A dehydrogenase: impaired association of enzyme subunits that is due to an A421V substitution causes glutaric acidemia type I in the Amish. Am J Hum Genet. 1996 Nov;59(5):1006–1011. [PMC free article] [PubMed] [Google Scholar]
- Bird A. P. CpG-rich islands and the function of DNA methylation. Nature. 1986 May 15;321(6067):209–213. doi: 10.1038/321209a0. [DOI] [PubMed] [Google Scholar]
- Christensen E., Ribes A., Busquets C., Pineda M., Duran M., Poll-The B. T., Greenberg C. R., Leffers H., Schwartz M. Compound heterozygosity in the glutaryl-CoA dehydrogenase gene with R227P mutation in one allele is associated with no or very low free glutarate excretion. J Inherit Metab Dis. 1997 Jul;20(3):383–386. doi: 10.1023/a:1005390214391. [DOI] [PubMed] [Google Scholar]
- Eiken H. G., Odland E., Boman H., Skjelkvåle L., Engebretsen L. F., Apold J. Application of natural and amplification created restriction sites for the diagnosis of PKU mutations. Nucleic Acids Res. 1991 Apr 11;19(7):1427–1430. doi: 10.1093/nar/19.7.1427. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goodman S. I., Kratz L. E., DiGiulio K. A., Biery B. J., Goodman K. E., Isaya G., Frerman F. E. Cloning of glutaryl-CoA dehydrogenase cDNA, and expression of wild type and mutant enzymes in Escherichia coli. Hum Mol Genet. 1995 Sep;4(9):1493–1498. doi: 10.1093/hmg/4.9.1493. [DOI] [PubMed] [Google Scholar]
- Goodman S. I., Stein D. E., Schlesinger S., Christensen E., Schwartz M., Greenberg C. R., Elpeleg O. N. Glutaryl-CoA dehydrogenase mutations in glutaric acidemia (type I): review and report of thirty novel mutations. Hum Mutat. 1998;12(3):141–144. doi: 10.1002/(SICI)1098-1004(1998)12:3<141::AID-HUMU1>3.0.CO;2-K. [DOI] [PubMed] [Google Scholar]
- Guldberg P., Güttler F. 'Broad-range' DGGE for single-step mutation scanning of entire genes: application to human phenylalanine hydroxylase gene. Nucleic Acids Res. 1994 Mar 11;22(5):880–881. doi: 10.1093/nar/22.5.880. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoffmann G. F., Athanassopoulos S., Burlina A. B., Duran M., de Klerk J. B., Lehnert W., Leonard J. V., Monavari A. A., Müller E., Muntau A. C. Clinical course, early diagnosis, treatment, and prevention of disease in glutaryl-CoA dehydrogenase deficiency. Neuropediatrics. 1996 Jun;27(3):115–123. doi: 10.1055/s-2007-973761. [DOI] [PubMed] [Google Scholar]
- Liesert M., Zschocke J., Hoffmann G. F., Mühlhäuser N., Buckel W. Biochemistry of glutaric aciduria type I: activities of in vitro expressed wild-type and mutant cDNA encoding human glutaryl-CoA dehydrogenase. J Inherit Metab Dis. 1999 May;22(3):256–258. doi: 10.1023/a:1005525903207. [DOI] [PubMed] [Google Scholar]
- Nyhan W. L., Zschocke J., Hoffmann G., Stein D. E., Bao L., Goodman S. Glutaryl-CoA dehydrogenase deficiency presenting as 3-hydroxyglutaric aciduria. Mol Genet Metab. 1999 Mar;66(3):199–204. doi: 10.1006/mgme.1998.2794. [DOI] [PubMed] [Google Scholar]
- Schwartz M., Christensen E., Superti-Furga A., Brandt N. J. The human glutaryl-CoA dehydrogenase gene: report of intronic sequences and of 13 novel mutations causing glutaric aciduria type I. Hum Genet. 1998 Apr;102(4):452–458. doi: 10.1007/s004390050720. [DOI] [PubMed] [Google Scholar]
- Zschocke J., Quak E., Knauer A., Fritz B., Aslan M., Hoffmann G. F. Large heterozygous deletion masquerading as homozygous missense mutation: a pitfall in diagnostic mutation analysis. J Inherit Metab Dis. 1999 Aug;22(6):687–692. doi: 10.1023/a:1005527731397. [DOI] [PubMed] [Google Scholar]