Skip to main content
Journal of Medical Genetics logoLink to Journal of Medical Genetics
. 1999 Jan;36(1):14–20.

Molecular analysis of the APC gene in 205 families: extended genotype-phenotype correlations in FAP and evidence for the role of APC amino acid changes in colorectal cancer predisposition

Y Wallis 1, D Morton 1, C McKeown 1, F Macdonald 1
PMCID: PMC1762945  PMID: 9950360

Abstract

BACKGROUND/AIMS—The development of colorectal cancer and a variable range of extracolonic manifestations in familial adenomatous polyposis (FAP) is the result of the dominant inheritance of adenomatous polyposis coli (APC) gene mutations. In this study, direct mutation analysis of the APC gene was performed to determine genotype-phenotype correlations for nine extracolonic manifestations and to investigate the incidence of APC mutations in non-FAP colorectal cancer.
METHODS—The APC gene was analysed in 190 unrelated FAP and 15 non-FAP colorectal cancer patients using denaturing gradient gel electrophoresis, the protein truncation test, and direct sequencing.
RESULTS—Chain terminating signals were only identified in patients belonging to the FAP group (105 patients). Amino acid changes were identified in four patients, three of whom belonged to the non-FAP group of colorectal cancer patients. Genotype-phenotype correlations identified significant differences in the nature of certain extracolonic manifestations in FAP patients belonging to three mutation subgroups.
CONCLUSIONS—Extended genotypephenotype correlations made in this study may have the potential to determine the most appropriate surveillance and prophylactic treatment regimens for those patients with mutations associated with life threatening conditions. This study also provided evidence for the pathological nature of amino acid changes in APC associated with both FAP and non-FAP colorectal cancer patients.


Keywords: familial adenomatous polyposis; genotype-phenotype; familial colorectal cancer

Full Text

The Full Text of this article is available as a PDF (119.1 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Belchetz L. A., Berk T., Bapat B. V., Cohen Z., Gallinger S. Changing causes of mortality in patients with familial adenomatous polyposis. Dis Colon Rectum. 1996 Apr;39(4):384–387. doi: 10.1007/BF02054051. [DOI] [PubMed] [Google Scholar]
  2. Dobbie Z., Spycher M., Mary J. L., Häner M., Guldenschuh I., Hürliman R., Amman R., Roth J., Müller H., Scott R. J. Correlation between the development of extracolonic manifestations in FAP patients and mutations beyond codon 1403 in the APC gene. J Med Genet. 1996 Apr;33(4):274–280. doi: 10.1136/jmg.33.4.274. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Fodde R., van der Luijt R., Wijnen J., Tops C., van der Klift H., van Leeuwen-Cornelisse I., Griffioen G., Vasen H., Khan P. M. Eight novel inactivating germ line mutations at the APC gene identified by denaturing gradient gel electrophoresis. Genomics. 1992 Aug;13(4):1162–1168. doi: 10.1016/0888-7543(92)90032-n. [DOI] [PubMed] [Google Scholar]
  4. Giardiello F. M., Petersen G. M., Brensinger J. D., Luce M. C., Cayouette M. C., Bacon J., Booker S. V., Hamilton S. R. Hepatoblastoma and APC gene mutation in familial adenomatous polyposis. Gut. 1996 Dec;39(6):867–869. doi: 10.1136/gut.39.6.867. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Hodgson S. V., Coonar A. S., Hanson P. J., Cottrell S., Scriven P. N., Jones T., Hawley P. R., Wilkinson M. L. Two cases of 5q deletions in patients with familial adenomatous polyposis: possible link with Caroli's disease. J Med Genet. 1993 May;30(5):369–375. doi: 10.1136/jmg.30.5.369. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Joslyn G., Carlson M., Thliveris A., Albertsen H., Gelbert L., Samowitz W., Groden J., Stevens J., Spirio L., Robertson M. Identification of deletion mutations and three new genes at the familial polyposis locus. Cell. 1991 Aug 9;66(3):601–613. doi: 10.1016/0092-8674(81)90022-2. [DOI] [PubMed] [Google Scholar]
  7. Kinzler K. W., Nilbert M. C., Su L. K., Vogelstein B., Bryan T. M., Levy D. B., Smith K. J., Preisinger A. C., Hedge P., McKechnie D. Identification of FAP locus genes from chromosome 5q21. Science. 1991 Aug 9;253(5020):661–665. doi: 10.1126/science.1651562. [DOI] [PubMed] [Google Scholar]
  8. Laken S. J., Petersen G. M., Gruber S. B., Oddoux C., Ostrer H., Giardiello F. M., Hamilton S. R., Hampel H., Markowitz A., Klimstra D. Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC. Nat Genet. 1997 Sep;17(1):79–83. doi: 10.1038/ng0997-79. [DOI] [PubMed] [Google Scholar]
  9. MacDonald F., Morton D. G., Rindl P. M., Haydon J., Cullen R., Gibson J., Neoptolemos J. P., Keighley M. R., McKeown C. M., Hultén M. Predictive diagnosis of familial adenomatous polyposis with linked DNA markers: population based study. BMJ. 1992 Apr 4;304(6831):869–872. doi: 10.1136/bmj.304.6831.869. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Mandl M., Caspari R., Jauch A., Böker T., Raschke H., Sengteller M., Propping P., Friedl W. Familial adenomatous polyposis: a submicroscopic deletion at the APC locus in a family with mentally normal patients. Hum Genet. 1996 Feb;97(2):204–208. doi: 10.1007/BF02265266. [DOI] [PubMed] [Google Scholar]
  11. Marchese C. A., Bertolino F., Ceccopieri B., Vanzetti M., Scaglione D., Locatelli L., Montera M., Romio L., Resta N., Stella A. Clinical findings in a family with familial adenomatous polyposis and a missense mutation of the adenomatous polyposis coli gene. Scand J Gastroenterol. 1996 Sep;31(9):917–920. doi: 10.3109/00365529609052002. [DOI] [PubMed] [Google Scholar]
  12. Miyoshi Y., Ando H., Nagase H., Nishisho I., Horii A., Miki Y., Mori T., Utsunomiya J., Baba S., Petersen G. Germ-line mutations of the APC gene in 53 familial adenomatous polyposis patients. Proc Natl Acad Sci U S A. 1992 May 15;89(10):4452–4456. doi: 10.1073/pnas.89.10.4452. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Munemitsu S., Albert I., Souza B., Rubinfeld B., Polakis P. Regulation of intracellular beta-catenin levels by the adenomatous polyposis coli (APC) tumor-suppressor protein. Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):3046–3050. doi: 10.1073/pnas.92.7.3046. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Nagase H., Miyoshi Y., Horii A., Aoki T., Petersen G. M., Vogelstein B., Maher E., Ogawa M., Maruyama M., Utsunomiya J. Screening for germ-line mutations in familial adenomatous polyposis patients: 61 new patients and a summary of 150 unrelated patients. Hum Mutat. 1992;1(6):467–473. doi: 10.1002/humu.1380010603. [DOI] [PubMed] [Google Scholar]
  15. Olschwang S., Laurent-Puig P., Groden J., White R., Thomas G. Germ-line mutations in the first 14 exons of the adenomatous polyposis coli (APC) gene. Am J Hum Genet. 1993 Feb;52(2):273–279. [PMC free article] [PubMed] [Google Scholar]
  16. Olschwang S., Tiret A., Laurent-Puig P., Muleris M., Parc R., Thomas G. Restriction of ocular fundus lesions to a specific subgroup of APC mutations in adenomatous polyposis coli patients. Cell. 1993 Dec 3;75(5):959–968. doi: 10.1016/0092-8674(93)90539-3. [DOI] [PubMed] [Google Scholar]
  17. Peifer M. Regulating cell proliferation: as easy as APC. Science. 1996 May 17;272(5264):974–975. doi: 10.1126/science.272.5264.974. [DOI] [PubMed] [Google Scholar]
  18. Powell S. M., Petersen G. M., Krush A. J., Booker S., Jen J., Giardiello F. M., Hamilton S. R., Vogelstein B., Kinzler K. W. Molecular diagnosis of familial adenomatous polyposis. N Engl J Med. 1993 Dec 30;329(27):1982–1987. doi: 10.1056/NEJM199312303292702. [DOI] [PubMed] [Google Scholar]
  19. Suleková Z., Ballhausen W. G. A novel coding exon of the human adenomatous polyposis coli gene. Hum Genet. 1995 Oct;96(4):469–471. doi: 10.1007/BF00191808. [DOI] [PubMed] [Google Scholar]
  20. Tops C. M., van der Klift H. M., van der Luijt R. B., Griffioen G., Taal B. G., Vasen H. F., Khan P. M. Non-allelic heterogeneity of familial adenomatous polyposis. Am J Med Genet. 1993 Sep 15;47(4):563–567. doi: 10.1002/ajmg.1320470425. [DOI] [PubMed] [Google Scholar]
  21. Varesco L., Gismondi V., James R., Robertson M., Grammatico P., Groden J., Casarino L., De Benedetti L., Bafico A., Bertario L. Identification of APC gene mutations in Italian adenomatous polyposis coli patients by PCR-SSCP analysis. Am J Hum Genet. 1993 Feb;52(2):280–285. [PMC free article] [PubMed] [Google Scholar]
  22. Wallis Y. L., Macdonald F., Hultén M., Morton J. E., McKeown C. M., Neoptolemos J. P., Keighley M., Morton D. G. Genotype-phenotype correlation between position of constitutional APC gene mutation and CHRPE expression in familial adenomatous polyposis. Hum Genet. 1994 Nov;94(5):543–548. doi: 10.1007/BF00211023. [DOI] [PubMed] [Google Scholar]
  23. Xia L., St Denis K. A., Bapat B. Evidence for a novel exon in the coding region of the adenomatous polyposis coli (APC) gene. Genomics. 1995 Aug 10;28(3):589–591. doi: 10.1006/geno.1995.1195. [DOI] [PubMed] [Google Scholar]
  24. van der Luijt R. B., Khan P. M., Vasen H. F., Tops C. M., van Leeuwen-Cornelisse I. S., Wijnen J. T., van der Klift H. M., Plug R. J., Griffioen G., Fodde R. Molecular analysis of the APC gene in 105 Dutch kindreds with familial adenomatous polyposis: 67 germline mutations identified by DGGE, PTT, and southern analysis. Hum Mutat. 1997;9(1):7–16. doi: 10.1002/(SICI)1098-1004(1997)9:1<7::AID-HUMU2>3.0.CO;2-8. [DOI] [PubMed] [Google Scholar]
  25. van der Luijt R. B., Vasen H. F., Tops C. M., Breukel C., Fodde R., Meera Khan P. APC mutation in the alternatively spliced region of exon 9 associated with late onset familial adenomatous polyposis. Hum Genet. 1995 Dec;96(6):705–710. doi: 10.1007/BF00210303. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Medical Genetics are provided here courtesy of BMJ Publishing Group

RESOURCES