Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1995 Mar;177(6):1564–1569. doi: 10.1128/jb.177.6.1564-1569.1995

Cloning, sequencing, and expression of the uroporphyrinogen III methyltransferase cobA gene of Propionibacterium freudenreichii (shermanii).

I Sattler 1, C A Roessner 1, N J Stolowich 1, S H Hardin 1, L W Harris-Haller 1, N T Yokubaitis 1, Y Murooka 1, Y Hashimoto 1, A I Scott 1
PMCID: PMC176773  PMID: 7883713

Abstract

We cloned, sequenced, and overexpressed cobA, the gene encoding uroporphyrinogen III methyltransferase in Propionibacterium freudenreichii, and examined the catalytic properties of the enzyme. The methyltransferase is similar in mass (27 kDa) and homologous to the one isolated from Pseudomonas denitrificans. In contrast to the much larger isoenzyme encoded by the cysG gene of Escherichia coli (52 kDa), the P. freudenreichii enzyme does not contain the additional 22-kDa peptide moiety at its N-terminal end bearing the oxidase-ferrochelatase activity responsible for the conversion of dihydrosirohydrochlorin (precorrin-2) to siroheme. Since it does not contain this moiety, it is not a likely candidate for synthesis of a cobalt-containing early intermediate that has been proposed for the vitamin B12 biosynthetic pathway in P. freudenreichii. Uroporphyrinogen III methyltransferase of P. freudenreichii not only catalyzes the addition of two methyl groups to uroporphyrinogen III to afford the early vitamin B12 intermediate, precorrin-2, but also has an overmethylation property that catalyzes the synthesis of several tri- and tetra-methylated compounds that are not part of the vitamin B12 pathway. The enzyme catalyzes the addition of three methyl groups to uroporphyrinogen I to form trimethylpyrrocorphin, the intermediate necessary for biosynthesis of the natural products, factors S1 and S3, previously isolated from this organism. A second gene found upstream from the cobA gene encodes a protein homologous to CbiO of Salmonella typhimurium, a membrane-bound, ATP-dependent transport protein thought to be part of the cobalt transport system involved in vitamin B12 synthesis. These two genes do not appear to constitute part of an extensive cobalamin operon.

Full Text

The Full Text of this article is available as a PDF (296.9 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Blanche F., Debussche L., Thibaut D., Crouzet J., Cameron B. Purification and characterization of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Pseudomonas denitrificans. J Bacteriol. 1989 Aug;171(8):4222–4231. doi: 10.1128/jb.171.8.4222-4231.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Blanche F., Robin C., Couder M., Faucher D., Cauchois L., Cameron B., Crouzet J. Purification, characterization, and molecular cloning of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Methanobacterium ivanovii. J Bacteriol. 1991 Aug;173(15):4637–4645. doi: 10.1128/jb.173.15.4637-4645.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  4. Crouzet J., Cauchois L., Blanche F., Debussche L., Thibaut D., Rouyez M. C., Rigault S., Mayaux J. F., Cameron B. Nucleotide sequence of a Pseudomonas denitrificans 5.4-kilobase DNA fragment containing five cob genes and identification of structural genes encoding S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase and cobyrinic acid a,c-diamide synthase. J Bacteriol. 1990 Oct;172(10):5968–5979. doi: 10.1128/jb.172.10.5968-5979.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Debussche L., Couder M., Thibaut D., Cameron B., Crouzet J., Blanche F. Assay, purification, and characterization of cobaltochelatase, a unique complex enzyme catalyzing cobalt insertion in hydrogenobyrinic acid a,c-diamide during coenzyme B12 biosynthesis in Pseudomonas denitrificans. J Bacteriol. 1992 Nov;174(22):7445–7451. doi: 10.1128/jb.174.22.7445-7451.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Debussche L., Thibaut D., Cameron B., Crouzet J., Blanche F. Biosynthesis of the corrin macrocycle of coenzyme B12 in Pseudomonas denitrificans. J Bacteriol. 1993 Nov;175(22):7430–7440. doi: 10.1128/jb.175.22.7430-7440.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Goldman B. S., Roth J. R. Genetic structure and regulation of the cysG gene in Salmonella typhimurium. J Bacteriol. 1993 Mar;175(5):1457–1466. doi: 10.1128/jb.175.5.1457-1466.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Jeter R. M., Olivera B. M., Roth J. R. Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic growth conditions. J Bacteriol. 1984 Jul;159(1):206–213. doi: 10.1128/jb.159.1.206-213.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Jones M. C., Jenkins J. M., Smith A. G., Howe C. J. Cloning and characterisation of genes for tetrapyrrole biosynthesis from the cyanobacterium Anacystis nidulans R2. Plant Mol Biol. 1994 Feb;24(3):435–448. doi: 10.1007/BF00024112. [DOI] [PubMed] [Google Scholar]
  10. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  11. Macdonald H., Cole J. Molecular cloning and functional analysis of the cysG and nirB genes of Escherichia coli K12, two closely-linked genes required for NADH-dependent nitrite reductase activity. Mol Gen Genet. 1985;200(2):328–334. doi: 10.1007/BF00425444. [DOI] [PubMed] [Google Scholar]
  12. Murakami K., Hashimoto Y., Murooka Y. Cloning and characterization of the gene encoding glutamate 1-semialdehyde 2,1-aminomutase, which is involved in delta-aminolevulinic acid synthesis in Propionibacterium freudenreichii. Appl Environ Microbiol. 1993 Jan;59(1):347–350. doi: 10.1128/aem.59.1.347-350.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Peakman T., Crouzet J., Mayaux J. F., Busby S., Mohan S., Harborne N., Wootton J., Nicolson R., Cole J. Nucleotide sequence, organisation and structural analysis of the products of genes in the nirB-cysG region of the Escherichia coli K-12 chromosome. Eur J Biochem. 1990 Jul 31;191(2):315–323. doi: 10.1111/j.1432-1033.1990.tb19125.x. [DOI] [PubMed] [Google Scholar]
  14. Robin C., Blanche F., Cauchois L., Cameron B., Couder M., Crouzet J. Primary structure, expression in Escherichia coli, and properties of S-adenosyl-L-methionine:uroporphyrinogen III methyltransferase from Bacillus megaterium. J Bacteriol. 1991 Aug;173(15):4893–4896. doi: 10.1128/jb.173.15.4893-4896.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Roessner C. A., Warren M. J., Santander P. J., Atshaves B. P., Ozaki S., Stolowich N. J., Iida K., Scott A. I. Expression of 9 Salmonella typhimurium enzymes for cobinamide synthesis. Identification of the 11-methyl and 20-methyl transferases of corrin biosynthesis. FEBS Lett. 1992 Apr 13;301(1):73–78. doi: 10.1016/0014-5793(92)80213-z. [DOI] [PubMed] [Google Scholar]
  16. Roth J. R., Lawrence J. G., Rubenfield M., Kieffer-Higgins S., Church G. M. Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol. 1993 Jun;175(11):3303–3316. doi: 10.1128/jb.175.11.3303-3316.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Spencer J. B., Stolowich N. J., Roessner C. A., Scott A. I. The Escherichia coli cysG gene encodes the multifunctional protein, siroheme synthase. FEBS Lett. 1993 Nov 29;335(1):57–60. doi: 10.1016/0014-5793(93)80438-z. [DOI] [PubMed] [Google Scholar]
  19. Thibaut D., Couder M., Crouzet J., Debussche L., Cameron B., Blanche F. Assay and purification of S-adenosyl-L-methionine:precorrin-2 methyltransferase from Pseudomonas denitrificans. J Bacteriol. 1990 Nov;172(11):6245–6251. doi: 10.1128/jb.172.11.6245-6251.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Warren M. J., Bolt E. L., Roessner C. A., Scott A. I., Spencer J. B., Woodcock S. C. Gene dissection demonstrates that the Escherichia coli cysG gene encodes a multifunctional protein. Biochem J. 1994 Sep 15;302(Pt 3):837–844. doi: 10.1042/bj3020837. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Warren M. J., Roessner C. A., Ozaki S., Stolowich N. J., Santander P. J., Scott A. I. Enzymatic synthesis and structure of precorrin-3, a trimethyldipyrrocorphin intermediate in vitamin B12 biosynthesis. Biochemistry. 1992 Jan 21;31(2):603–609. doi: 10.1021/bi00117a043. [DOI] [PubMed] [Google Scholar]
  22. Warren M. J., Roessner C. A., Santander P. J., Scott A. I. The Escherichia coli cysG gene encodes S-adenosylmethionine-dependent uroporphyrinogen III methylase. Biochem J. 1990 Feb 1;265(3):725–729. doi: 10.1042/bj2650725. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Warren M. J., Stolowich N. J., Santander P. J., Roessner C. A., Sowa B. A., Scott A. I. Enzymatic synthesis of dihydrosirohydrochlorin (precorrin-2) and of a novel pyrrocorphin by uroporphyrinogen III methylase. FEBS Lett. 1990 Feb 12;261(1):76–80. doi: 10.1016/0014-5793(90)80640-5. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES