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. 1995 Jun;177(11):2957–2964. doi: 10.1128/jb.177.11.2957-2964.1995

Characterization of traX, the F plasmid locus required for acetylation of F-pilin subunits.

K Maneewannakul 1, S Maneewannakul 1, K Ippen-Ihler 1
PMCID: PMC176979  PMID: 7768788

Abstract

Acetylation of F-pilin subunits has previously been shown to depend upon expression of the F plasmid transfer operon gene traX. To assess the requirement for pilin acetylation in conjugative transfer of F, we constructed traX::kan insertion mutations and crossed them onto the transmissible F derivative pOX38. Under standard conditions, the function of traX seemed to be dispensable. Although pilin synthesized by mutant plasmids pOX38-traX482 and pOX38-traX483 was not acetylated, F-pilus production and F-pilus-specific phage infection appeared to be normal and transfer occurred at wild-type frequency. Analysis of labeled products showed that TraX+ plasmids expressed two approximately 24- (TraX1) and 22-kDa (TraX2) polypeptides that localized in the cytoplasmic membranes of cells. No product that was similar in size to the product predicted from the traX open reading frame (27.5 kDa) was detected. Therefore, we used site-directed mutagenesis, stop codon linker insertions, and phoA fusion analysis to investigate traX expression. Both TraX1 and TraX2 appeared to be encoded by the traX open reading frame. Insertion of a stop codon linker into the traX C-terminal coding region led to synthesis of two correspondingly truncated products, and fusions to phoA indicated that only the traX reading frame was translated. Expression was also very dependent on the traX M1 start codon; when this was altered, no protein products were observed. However, pilin acetylation activity was still detectable, indicating that some other in-frame start codon(s) can also be used. All sequences that are essential for activity are contained between traX codons 29 and 225. Sequence analysis indicated that traX mRNA is capable of forming a variety of base-paired structures. We suggest that traX expression is translationally controlled and that F-pilin acetylation activity may be regulated by physiological conditions in cells.

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Selected References

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  1. Atkins J. F., Weiss R. B., Gesteland R. F. Ribosome gymnastics--degree of difficulty 9.5, style 10.0. Cell. 1990 Aug 10;62(3):413–423. doi: 10.1016/0092-8674(90)90007-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Atkins J. F., Weiss R. B., Thompson S., Gesteland R. F. Towards a genetic dissection of the basis of triplet decoding, and its natural subversion: programmed reading frame shifts and hops. Annu Rev Genet. 1991;25:201–228. doi: 10.1146/annurev.ge.25.120191.001221. [DOI] [PubMed] [Google Scholar]
  3. Benhar I., Engelberg-Kulka H. Frameshifting in the expression of the E. coli trpR gene occurs by the bypassing of a segment of its coding sequence. Cell. 1993 Jan 15;72(1):121–130. doi: 10.1016/0092-8674(93)90056-v. [DOI] [PubMed] [Google Scholar]
  4. Benhar I., Miller C., Engelberg-Kulka H. Frameshifting in the expression of the Escherichia coli trpR gene is modulated by translation initiation. J Bacteriol. 1993 May;175(10):3204–3207. doi: 10.1128/jb.175.10.3204-3207.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Berger E. M., Cox G., Weber L., Kenney J. S. Actin acetylation in Drosophila tissue culture cells. Biochem Genet. 1981 Apr;19(3-4):321–331. doi: 10.1007/BF00504277. [DOI] [PubMed] [Google Scholar]
  6. Cram D. S., Loh S. M., Cheah K. C., Skurray R. A. Sequence and conservation of genes at the distal end of the transfer region on plasmids F and R6-5. Gene. 1991 Jul 31;104(1):85–90. doi: 10.1016/0378-1119(91)90469-r. [DOI] [PubMed] [Google Scholar]
  7. Cumberlidge A. G., Isono K. Ribosomal protein modification in Escherichia coli. I. A mutant lacking the N-terminal acetylation of protein S5 exhibits thermosensitivity. J Mol Biol. 1979 Jun 25;131(2):169–189. doi: 10.1016/0022-2836(79)90072-x. [DOI] [PubMed] [Google Scholar]
  8. Driessen H. P., de Jong W. W., Tesser G. I., Bloemendal H. The mechanism of N-terminal acetylation of proteins. CRC Crit Rev Biochem. 1985;18(4):281–325. doi: 10.3109/10409238509086784. [DOI] [PubMed] [Google Scholar]
  9. Finlay B. B., Frost L. S., Paranchych W., Parker J. M., Hodges R. S. Major antigenic determinants of F and ColB2 pili. J Bacteriol. 1985 Jul;163(1):331–335. doi: 10.1128/jb.163.1.331-335.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Frost L. S., Lee J. S., Scraba D. G., Paranchych W. Two monoclonal antibodies specific for different epitopes within the amino-terminal region of F pilin. J Bacteriol. 1986 Oct;168(1):192–198. doi: 10.1128/jb.168.1.192-198.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Frost L. S., Paranchych W., Willetts N. S. DNA sequence of the F traALE region that includes the gene for F pilin. J Bacteriol. 1984 Oct;160(1):395–401. doi: 10.1128/jb.160.1.395-401.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Grossman T. H., Frost L. S., Silverman P. M. Structure and function of conjugative pili: monoclonal antibodies as probes for structural variants of F pili. J Bacteriol. 1990 Mar;172(3):1174–1179. doi: 10.1128/jb.172.3.1174-1179.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Huang W. M., Ao S. Z., Casjens S., Orlandi R., Zeikus R., Weiss R., Winge D., Fang M. A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60. Science. 1988 Feb 26;239(4843):1005–1012. doi: 10.1126/science.2830666. [DOI] [PubMed] [Google Scholar]
  14. Ippen-Ihler K., Achtman M., Willetts N. Deletion map of the Escherichia coli K-12 sex factor F: the order of eleven transfer cistrons. J Bacteriol. 1972 Jun;110(3):857–863. doi: 10.1128/jb.110.3.857-863.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Ito K., Sato T., Yura T. Synthesis and assembly of the membrane proteins in E. coli. Cell. 1977 Jul;11(3):551–559. doi: 10.1016/0092-8674(77)90073-3. [DOI] [PubMed] [Google Scholar]
  16. Jörnvall H. Acetylation of Protein N-terminal amino groups structural observations on alpha-amino acetylated proteins. J Theor Biol. 1975 Nov;55(1):1–12. doi: 10.1016/s0022-5193(75)80105-6. [DOI] [PubMed] [Google Scholar]
  17. Jörnvall H., Fairwell T., Kratofil P., Wills C. Differences in alpha-amino acetylation of isozymes of yeast alcohol dehydrogenase. FEBS Lett. 1980 Feb 25;111(1):214–218. doi: 10.1016/0014-5793(80)80796-4. [DOI] [PubMed] [Google Scholar]
  18. Kathir P., Ippen-Ihler K. Construction and characterization of derivatives carrying insertion mutations in F plasmid transfer region genes, trbA, artA, traQ, and trbB. Plasmid. 1991 Jul;26(1):40–54. doi: 10.1016/0147-619x(91)90035-u. [DOI] [PubMed] [Google Scholar]
  19. Laine S., Moore D., Kathir P., Ippen-Ihler K. Genes and gene products involved in the synthesis of F-pili. Basic Life Sci. 1985;30:535–553. doi: 10.1007/978-1-4613-2447-8_38. [DOI] [PubMed] [Google Scholar]
  20. Maneewannakul K., Ippen-Ihler K. Construction and analysis of F plasmid traR, trbJ, and trbH mutants. J Bacteriol. 1993 Mar;175(5):1528–1531. doi: 10.1128/jb.175.5.1528-1531.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Maneewannakul K., Maneewannakul S., Ippen-Ihler K. Sequence alterations affecting F plasmid transfer gene expression: a conjugation system dependent on transcription by the RNA polymerase of phage T7. Mol Microbiol. 1992 Oct;6(20):2961–2973. doi: 10.1111/j.1365-2958.1992.tb01755.x. [DOI] [PubMed] [Google Scholar]
  22. Maneewannakul K., Maneewannakul S., Ippen-Ihler K. Synthesis of F pilin. J Bacteriol. 1993 Mar;175(5):1384–1391. doi: 10.1128/jb.175.5.1384-1391.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Maneewannakul S., Kathir P., Ippen-Ihler K. Characterization of the F plasmid mating aggregation gene traN and of a new F transfer region locus trbE. J Mol Biol. 1992 May 20;225(2):299–311. doi: 10.1016/0022-2836(92)90923-8. [DOI] [PubMed] [Google Scholar]
  24. Maneewannakul S., Maneewannakul K., Ippen-Ihler K. Characterization of trbC, a new F plasmid tra operon gene that is essential to conjugative transfer. J Bacteriol. 1991 Jun;173(12):3872–3878. doi: 10.1128/jb.173.12.3872-3878.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Maneewannakul S., Maneewannakul K., Ippen-Ihler K. Characterization, localization, and sequence of F transfer region products: the pilus assembly gene product TraW and a new product, TrbI. J Bacteriol. 1992 Sep;174(17):5567–5574. doi: 10.1128/jb.174.17.5567-5574.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Maneewannakul S., Maneewannakul K., Ippen-Ihler K. The pKSM710 vector cassette provides tightly regulated lac and T7lac promoters and strategies for manipulating N-terminal protein sequences. Plasmid. 1994 May;31(3):300–307. doi: 10.1006/plas.1994.1032. [DOI] [PubMed] [Google Scholar]
  27. McIntire S., Willetts N. Plasmid cointegrates of Flac and lambda prophage. J Bacteriol. 1978 Apr;134(1):184–192. doi: 10.1128/jb.134.1.184-192.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Minkley E. G., Jr, Polen S., Brinton C. C., Jr, Ippen-Ihler K. Identification of the structural gene for F-pilin. J Mol Biol. 1976 Nov;108(1):111–121. doi: 10.1016/s0022-2836(76)80098-8. [DOI] [PubMed] [Google Scholar]
  29. Moore D., Hamilton C. M., Maneewannakul K., Mintz Y., Frost L. S., Ippen-Ihler K. The Escherichia coli K-12 F plasmid gene traX is required for acetylation of F pilin. J Bacteriol. 1993 Mar;175(5):1375–1383. doi: 10.1128/jb.175.5.1375-1383.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Moore D., Wu J. H., Kathir P., Hamilton C. M., Ippen-Ihler K. Analysis of transfer genes and gene products within the traB-traC region of the Escherichia coli fertility factor, F. J Bacteriol. 1987 Sep;169(9):3994–4002. doi: 10.1128/jb.169.9.3994-4002.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Parker J. Errors and alternatives in reading the universal genetic code. Microbiol Rev. 1989 Sep;53(3):273–298. doi: 10.1128/mr.53.3.273-298.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Pollitt S., Zalkin H. Role of primary structure and disulfide bond formation in beta-lactamase secretion. J Bacteriol. 1983 Jan;153(1):27–32. doi: 10.1128/jb.153.1.27-32.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Ramagopal S., Subramanian A. R. Growth-dependent regulation in production and utilization of acetylated ribosomal protein L7. J Mol Biol. 1975 Jun 5;94(4):633–641. doi: 10.1016/0022-2836(75)90327-7. [DOI] [PubMed] [Google Scholar]
  34. Rubenstein P., Deuchler J. Acetylated and nonacetylated actins in Dictyostelium discoideum. J Biol Chem. 1979 Nov 10;254(21):11142–11147. [PubMed] [Google Scholar]
  35. Tanaka S., Matsushita Y., Yoshikawa A., Isono K. Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli K12. Mol Gen Genet. 1989 Jun;217(2-3):289–293. doi: 10.1007/BF02464895. [DOI] [PubMed] [Google Scholar]
  36. Traxler B. A., Minkley E. G., Jr Evidence that DNA helicase I and oriT site-specific nicking are both functions of the F TraI protein. J Mol Biol. 1988 Nov 5;204(1):205–209. doi: 10.1016/0022-2836(88)90609-2. [DOI] [PubMed] [Google Scholar]
  37. Traxler B. A., Minkley E. G., Jr Revised genetic map of the distal end of the F transfer operon: implications for DNA helicase I, nicking at oriT, and conjugal DNA transport. J Bacteriol. 1987 Jul;169(7):3251–3259. doi: 10.1128/jb.169.7.3251-3259.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Wu J. H., Kathir P., Ippen-Ihler K. The product of the F plasmid transfer operon gene, traF, is a periplasmic protein. J Bacteriol. 1988 Aug;170(8):3633–3639. doi: 10.1128/jb.170.8.3633-3639.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Wu J. H., Moore D., Lee T., Ippen-Ihler K. Analysis of Escherichia coli K12 F factor transfer genes: traQ, trbA, and trbB. Plasmid. 1987 Jul;18(1):54–69. doi: 10.1016/0147-619x(87)90078-3. [DOI] [PubMed] [Google Scholar]
  40. Yoshikawa A., Isono S., Sheback A., Isono K. Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12. Mol Gen Genet. 1987 Oct;209(3):481–488. doi: 10.1007/BF00331153. [DOI] [PubMed] [Google Scholar]
  41. Yoshioka Y., Fujita Y., Ohtsubo E. Nucleotide sequence of the promoter-distal region of the tra operon of plasmid R100, including traI (DNA helicase I) and traD genes. J Mol Biol. 1990 Jul 5;214(1):39–53. doi: 10.1016/0022-2836(90)90145-C. [DOI] [PubMed] [Google Scholar]

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