Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1995 Aug;177(15):4356–4363. doi: 10.1128/jb.177.15.4356-4363.1995

Comparison of a fungal (family I) and bacterial (family II) cellulose-binding domain.

P Tomme 1, D P Driver 1, E A Amandoron 1, R C Miller Jr 1, R Antony 1, J Warren 1, D G Kilburn 1
PMCID: PMC177184  PMID: 7635821

Abstract

A family II cellulose-binding domain (CBD) of an exoglucanase/xylanase (Cex) from the bacterium Cellulomonas fimi was replaced with the family I CBD of cellobiohydrolase I (CbhI) from the fungus Trichoderma reesei. Expression of the hybrid gene in Escherichia coli yielded up to 50 mg of the hybrid protein, CexCBDCbhI, per liter of culture supernatant. The hybrid was purified to homogeneity by affinity chromatography on cellulose. The relative association constants (Kr) for the binding of Cex, CexCBDCbhI, the catalytic domain of Cex (p33), and CbhI to bacterial microcrystalline cellulose (BMCC) were 14.9, 7.8, 0.8, and 10.6 liters g-1, respectively. Cex and CexCBDCbhI had similar substrate specificities and similar activities on crystalline and amorphous cellulose. Both released predominantly cellobiose and cellotriose from amorphous cellulose. CexCBDCbhI was two to three times less active than Cex on BMCC, but significantly more active than Cex on soluble cellulose and on xylan. Unlike Cex, the hybrid protein neither bound to alpha-chitin nor released small particles from dewaxed cotton fibers.

Full Text

The Full Text of this article is available as a PDF (410.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baker T. A., Grossman A. D., Gross C. A. A gene regulating the heat shock response in Escherichia coli also affects proteolysis. Proc Natl Acad Sci U S A. 1984 Nov;81(21):6779–6783. doi: 10.1073/pnas.81.21.6779. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bhikhabhai R., Johansson G., Pettersson G. Isolation of cellulolytic enzymes from Trichoderma reesei QM 9414. J Appl Biochem. 1984 Oct-Dec;6(5-6):336–345. [PubMed] [Google Scholar]
  3. Béguin P., Aubert J. P. The biological degradation of cellulose. FEMS Microbiol Rev. 1994 Jan;13(1):25–58. doi: 10.1111/j.1574-6976.1994.tb00033.x. [DOI] [PubMed] [Google Scholar]
  4. Coutinho J. B., Gilkes N. R., Warren R. A., Kilburn D. G., Miller R. C., Jr The binding of Cellulomonas fimi endoglucanase C (CenC) to cellulose and Sephadex is mediated by the N-terminal repeats. Mol Microbiol. 1992 May;6(9):1243–1252. doi: 10.1111/j.1365-2958.1992.tb01563.x. [DOI] [PubMed] [Google Scholar]
  5. Din N., Damude H. G., Gilkes N. R., Miller R. C., Jr, Warren R. A., Kilburn D. G. C1-Cx revisited: intramolecular synergism in a cellulase. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11383–11387. doi: 10.1073/pnas.91.24.11383. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Din N., Forsythe I. J., Burtnick L. D., Gilkes N. R., Miller R. C., Jr, Warren R. A., Kilburn D. G. The cellulose-binding domain of endoglucanase A (CenA) from Cellulomonas fimi: evidence for the involvement of tryptophan residues in binding. Mol Microbiol. 1994 Feb;11(4):747–755. doi: 10.1111/j.1365-2958.1994.tb00352.x. [DOI] [PubMed] [Google Scholar]
  7. Fujii T., Miyashita K. Multiple domain structure in a chitinase gene (chiC) of Streptomyces lividans. J Gen Microbiol. 1993 Apr;139(4):677–686. doi: 10.1099/00221287-139-4-677. [DOI] [PubMed] [Google Scholar]
  8. Gilkes N. R., Claeyssens M., Aebersold R., Henrissat B., Meinke A., Morrison H. D., Kilburn D. G., Warren R. A., Miller R. C., Jr Structural and functional relationships in two families of beta-1,4-glycanases. Eur J Biochem. 1991 Dec 5;202(2):367–377. doi: 10.1111/j.1432-1033.1991.tb16384.x. [DOI] [PubMed] [Google Scholar]
  9. Gilkes N. R., Henrissat B., Kilburn D. G., Miller R. C., Jr, Warren R. A. Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families. Microbiol Rev. 1991 Jun;55(2):303–315. doi: 10.1128/mr.55.2.303-315.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Gilkes N. R., Jervis E., Henrissat B., Tekant B., Miller R. C., Jr, Warren R. A., Kilburn D. G. The adsorption of a bacterial cellulase and its two isolated domains to crystalline cellulose. J Biol Chem. 1992 Apr 5;267(10):6743–6749. [PubMed] [Google Scholar]
  11. Gilkes N. R., Kilburn D. G., Miller R. C., Jr, Warren R. A., Sugiyama J., Chanzy H., Henrissat B. Visualization of the adsorption of a bacterial endo-beta-1,4-glucanase and its isolated cellulose-binding domain to crystalline cellulose. Int J Biol Macromol. 1993 Dec;15(6):347–351. doi: 10.1016/0141-8130(93)90052-n. [DOI] [PubMed] [Google Scholar]
  12. Gilkes N. R., Langsford M. L., Kilburn D. G., Miller R. C., Jr, Warren R. A. Mode of action and substrate specificities of cellulases from cloned bacterial genes. J Biol Chem. 1984 Aug 25;259(16):10455–10459. [PubMed] [Google Scholar]
  13. Gilkes N. R., Warren R. A., Miller R. C., Jr, Kilburn D. G. Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis. J Biol Chem. 1988 Jul 25;263(21):10401–10407. [PubMed] [Google Scholar]
  14. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983 Jun 5;166(4):557–580. doi: 10.1016/s0022-2836(83)80284-8. [DOI] [PubMed] [Google Scholar]
  15. Henrissat B., Bairoch A. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J. 1993 Aug 1;293(Pt 3):781–788. doi: 10.1042/bj2930781. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kraulis J., Clore G. M., Nilges M., Jones T. A., Pettersson G., Knowles J., Gronenborn A. M. Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry. 1989 Sep 5;28(18):7241–7257. doi: 10.1021/bi00444a016. [DOI] [PubMed] [Google Scholar]
  17. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  18. Lever M. Colorimetric and fluorometric carbohydrate determination with p-hydroxybenzoic acid hydrazide. Biochem Med. 1973 Apr;7(2):274–281. doi: 10.1016/0006-2944(73)90083-5. [DOI] [PubMed] [Google Scholar]
  19. Mead D. A., Szczesna-Skorupa E., Kemper B. Single-stranded DNA 'blue' T7 promoter plasmids: a versatile tandem promoter system for cloning and protein engineering. Protein Eng. 1986 Oct-Nov;1(1):67–74. doi: 10.1093/protein/1.1.67. [DOI] [PubMed] [Google Scholar]
  20. O'Neill G., Goh S. H., Warren R. A., Kilburn D. G., Miller R. C., Jr Structure of the gene encoding the exoglucanase of Cellulomonas fimi. Gene. 1986;44(2-3):325–330. doi: 10.1016/0378-1119(86)90197-6. [DOI] [PubMed] [Google Scholar]
  21. Ong E., Kilburn D. G., Miller R. C., Jr, Warren R. A. Streptomyces lividans glycosylates the linker region of a beta-1,4-glycanase from Cellulomonas fimi. J Bacteriol. 1994 Feb;176(4):999–1008. doi: 10.1128/jb.176.4.999-1008.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Owolabi J. B., Beguin P., Kilburn D. G., Miller R. C., Warren R. A. Expression in Escherichia coli of the Cellulomonas fimi Structural Gene for Endoglucanase B. Appl Environ Microbiol. 1988 Feb;54(2):518–523. doi: 10.1128/aem.54.2.518-523.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Poole D. M., Hazlewood G. P., Huskisson N. S., Virden R., Gilbert H. J. The role of conserved tryptophan residues in the interaction of a bacterial cellulose binding domain with its ligand. FEMS Microbiol Lett. 1993 Jan 1;106(1):77–83. doi: 10.1111/j.1574-6968.1993.tb05938.x. [DOI] [PubMed] [Google Scholar]
  24. Reinikainen T., Ruohonen L., Nevanen T., Laaksonen L., Kraulis P., Jones T. A., Knowles J. K., Teeri T. T. Investigation of the function of mutated cellulose-binding domains of Trichoderma reesei cellobiohydrolase I. Proteins. 1992 Dec;14(4):475–482. doi: 10.1002/prot.340140408. [DOI] [PubMed] [Google Scholar]
  25. Robbins P. W., Overbye K., Albright C., Benfield B., Pero J. Cloning and high-level expression of chitinase-encoding gene of Streptomyces plicatus. Gene. 1992 Feb 1;111(1):69–76. doi: 10.1016/0378-1119(92)90604-n. [DOI] [PubMed] [Google Scholar]
  26. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  27. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Scopes R. K. Measurement of protein by spectrophotometry at 205 nm. Anal Biochem. 1974 May;59(1):277–282. doi: 10.1016/0003-2697(74)90034-7. [DOI] [PubMed] [Google Scholar]
  29. Ståhlberg J., Johansson G., Pettersson G. Trichoderma reesei has no true exo-cellulase: all intact and truncated cellulases produce new reducing end groups on cellulose. Biochim Biophys Acta. 1993 May 7;1157(1):107–113. doi: 10.1016/0304-4165(93)90085-m. [DOI] [PubMed] [Google Scholar]
  30. Tabor S., Richardson C. C. DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc Natl Acad Sci U S A. 1987 Jul;84(14):4767–4771. doi: 10.1073/pnas.84.14.4767. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Tindall K. R., Kunkel T. A. Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry. 1988 Aug 9;27(16):6008–6013. doi: 10.1021/bi00416a027. [DOI] [PubMed] [Google Scholar]
  32. Tomme P., Gilkes N. R., Miller R. C., Jr, Warren A. J., Kilburn D. G. An internal cellulose-binding domain mediates adsorption of an engineered bifunctional xylanase/cellulase. Protein Eng. 1994 Jan;7(1):117–123. doi: 10.1093/protein/7.1.117. [DOI] [PubMed] [Google Scholar]
  33. Tomme P., Van Tilbeurgh H., Pettersson G., Van Damme J., Vandekerckhove J., Knowles J., Teeri T., Claeyssens M. Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis. Eur J Biochem. 1988 Jan 4;170(3):575–581. doi: 10.1111/j.1432-1033.1988.tb13736.x. [DOI] [PubMed] [Google Scholar]
  34. Warren R. A., Beck C. F., Gilkes N. R., Kilburn D. G., Langsford M. L., Miller R. C., Jr, O'Neill G. P., Scheufens M., Wong W. K. Sequence conservation and region shuffling in an endoglucanase and an exoglucanase from Cellulomonas fimi. Proteins. 1986 Dec;1(4):335–341. doi: 10.1002/prot.340010407. [DOI] [PubMed] [Google Scholar]
  35. White A. R., Brown R. M. Enzymatic hydrolysis of cellulose: Visual characterization of the process. Proc Natl Acad Sci U S A. 1981 Feb;78(2):1047–1051. doi: 10.1073/pnas.78.2.1047. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Xu G. Y., Ong E., Gilkes N. R., Kilburn D. G., Muhandiram D. R., Harris-Brandts M., Carver J. P., Kay L. E., Harvey T. S. Solution structure of a cellulose-binding domain from Cellulomonas fimi by nuclear magnetic resonance spectroscopy. Biochemistry. 1995 May 30;34(21):6993–7009. [PubMed] [Google Scholar]
  37. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES