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. 1995 Oct;177(20):5865–5871. doi: 10.1128/jb.177.20.5865-5871.1995

Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6.

G Heiss 1, A Stolz 1, A E Kuhm 1, C Müller 1, J Klein 1, J Altenbuchner 1, H J Knackmuss 1
PMCID: PMC177411  PMID: 7592336

Abstract

An extradiol dioxygenase was cloned from the naphthalenesulfonate-degrading bacterial strain BN6 by screening a gene bank for colonies with 2,3-dihydroxybiphenyl dioxygenase activity. DNA sequence analysis of a 1,358-bp fragment revealed an open reading frame of only 486 bp. This is the smallest gene encoding an extradiol dioxygenase found until now. Expression of the gene in a T7 expression vector enabled purification of the enzyme. Gel filtration and sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis showed that the protein was a dimer with a subunit size of 21.7 kDa. The enzyme oxidized 2,3-dihydroxybiphenyl, 3-isopropylcatechol, 3- and 4-chlorocatechol, and 3- and 4-methylcatechol. Since the ability to convert 3-chlorocatechol is an unusual characteristic for an extradiol-cleaving dioxygenase, this reaction was analyzed in more detail. The deduced amino-terminal amino acid sequence differed from the corresponding sequence of the 1,2-dihydroxynaphthalene dioxygenase, which had been determined earlier from the enzyme purified from this strain. This indicates that strain BN6 carries at least two different extradiol dioxygenases.

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Selected References

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  1. Adams R. H., Huang C. M., Higson F. K., Brenner V., Focht D. D. Construction of a 3-chlorobiphenyl-utilizing recombinant from an intergeneric mating. Appl Environ Microbiol. 1992 Feb;58(2):647–654. doi: 10.1128/aem.58.2.647-654.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Arensdorf J. J., Focht D. D. Formation of chlorocatechol meta cleavage products by a pseudomonad during metabolism of monochlorobiphenyls. Appl Environ Microbiol. 1994 Aug;60(8):2884–2889. doi: 10.1128/aem.60.8.2884-2889.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Asturias J. A., Eltis L. D., Prucha M., Timmis K. N. Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. Identification of a new family of extradiol dioxygenases. J Biol Chem. 1994 Mar 11;269(10):7807–7815. [PubMed] [Google Scholar]
  4. Asturias J. A., Timmis K. N. Three different 2,3-dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6. J Bacteriol. 1993 Aug;175(15):4631–4640. doi: 10.1128/jb.175.15.4631-4640.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Barnsley E. A. Naphthalene metabolism by pseudomonads: the oxidation of 1,2-dihydroxynaphthalene to 2-hydroxychromene-2-carboxylic acid and the formation of 2'-hydroxybenzalpyruvate. Biochem Biophys Res Commun. 1976 Oct 4;72(3):1116–1121. doi: 10.1016/s0006-291x(76)80247-1. [DOI] [PubMed] [Google Scholar]
  6. Bartels I., Knackmuss H. J., Reineke W. Suicide Inactivation of Catechol 2,3-Dioxygenase from Pseudomonas putida mt-2 by 3-Halocatechols. Appl Environ Microbiol. 1984 Mar;47(3):500–505. doi: 10.1128/aem.47.3.500-505.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Bayly R. C., Dagley S., Gibson D. T. The metabolism of cresols by species of Pseudomonas. Biochem J. 1966 Nov;101(2):293–301. doi: 10.1042/bj1010293. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Bertini I., Briganti F., Mangani S., Nolting H. F., Scozzafava A. X-ray absorption studies on catechol 2,3-dioxygenase from Pseudomonas putida mt2. Biochemistry. 1994 Sep 6;33(35):10777–10784. doi: 10.1021/bi00201a027. [DOI] [PubMed] [Google Scholar]
  9. Boldt Y. R., Sadowsky M. J., Ellis L. B., Que L., Jr, Wackett L. P. A manganese-dependent dioxygenase from Arthrobacter globiformis CM-2 belongs to the major extradiol dioxygenase family. J Bacteriol. 1995 Mar;177(5):1225–1232. doi: 10.1128/jb.177.5.1225-1232.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1016/0003-2697(76)90527-3. [DOI] [PubMed] [Google Scholar]
  11. Bugg T. D. Overproduction, purification and properties of 2,3-dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli. Biochim Biophys Acta. 1993 Oct 6;1202(2):258–264. doi: 10.1016/0167-4838(93)90013-h. [DOI] [PubMed] [Google Scholar]
  12. Chung C. T., Niemela S. L., Miller R. H. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci U S A. 1989 Apr;86(7):2172–2175. doi: 10.1073/pnas.86.7.2172. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Eaton R. W., Chapman P. J. Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions. J Bacteriol. 1992 Dec;174(23):7542–7554. doi: 10.1128/jb.174.23.7542-7554.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Eaton R. W., Timmis K. N. Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204. J Bacteriol. 1986 Oct;168(1):123–131. doi: 10.1128/jb.168.1.123-131.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Eltis L. D., Hofmann B., Hecht H. J., Lünsdorf H., Timmis K. N. Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase. J Biol Chem. 1993 Feb 5;268(4):2727–2732. [PubMed] [Google Scholar]
  16. Furukawa K., Arimura N. Purification and properties of 2,3-dihydroxybiphenyl dioxygenase from polychlorinated biphenyl-degrading Pseudomonas pseudoalcaligenes and Pseudomonas aeruginosa carrying the cloned bphC gene. J Bacteriol. 1987 Feb;169(2):924–927. doi: 10.1128/jb.169.2.924-927.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Furukawa K., Simon J. R., Chakrabarty A. M. Common induction and regulation of biphenyl, xylene/toluene, and salicylate catabolism in Pseudomonas paucimobilis. J Bacteriol. 1983 Jun;154(3):1356–1362. doi: 10.1128/jb.154.3.1356-1362.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Harayama S., Kok M., Neidle E. L. Functional and evolutionary relationships among diverse oxygenases. Annu Rev Microbiol. 1992;46:565–601. doi: 10.1146/annurev.mi.46.100192.003025. [DOI] [PubMed] [Google Scholar]
  19. Harayama S., Rekik M. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J Biol Chem. 1989 Sep 15;264(26):15328–15333. [PubMed] [Google Scholar]
  20. Horvath R. S. Co-metabolism of methyl- and chloro-substituted catechols by an Achromobacter sp. possessing a new meta-cleaving oxygenase. Biochem J. 1970 Oct;119(5):871–876. doi: 10.1042/bj1190871. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Kabisch M., Fortnagel P. Nucleotide sequence of metapyrocatechase I (catechol 2,3-oxygenase I) gene mpcI from Alcaligenes eutrophus JMP222. Nucleic Acids Res. 1990 Jun 11;18(11):3405–3406. doi: 10.1093/nar/18.11.3405. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Klecka G. M., Gibson D. T. Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol. Appl Environ Microbiol. 1981 May;41(5):1159–1165. doi: 10.1128/aem.41.5.1159-1165.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Kuhm A. E., Knackmuss H. J., Stolz A. Purification and properties of 2'-hydroxybenzalpyruvate aldolase from a bacterium that degrades naphthalenesulfonates. J Biol Chem. 1993 May 5;268(13):9484–9489. [PubMed] [Google Scholar]
  24. Kuhm A. E., Stolz A., Ngai K. L., Knackmuss H. J. Purification and characterization of a 1,2-dihydroxynaphthalene dioxygenase from a bacterium that degrades naphthalenesulfonic acids. J Bacteriol. 1991 Jun;173(12):3795–3802. doi: 10.1128/jb.173.12.3795-3802.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  26. Lee S. Y., Rasheed S. A simple procedure for maximum yield of high-quality plasmid DNA. Biotechniques. 1990 Dec;9(6):676–679. [PubMed] [Google Scholar]
  27. Maeda M., Chung S. Y., Song E., Kudo T. Multiple genes encoding 2,3-dihydroxybiphenyl 1,2-dioxygenase in the gram-positive polychlorinated biphenyl-degrading bacterium Rhodococcus erythropolis TA421, isolated from a termite ecosystem. Appl Environ Microbiol. 1995 Feb;61(2):549–555. doi: 10.1128/aem.61.2.549-555.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Marsh J. L., Erfle M., Wykes E. J. The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation. Gene. 1984 Dec;32(3):481–485. doi: 10.1016/0378-1119(84)90022-2. [DOI] [PubMed] [Google Scholar]
  29. Nakai C., Kagamiyama H., Nozaki M., Nakazawa T., Inouye S., Ebina Y., Nakazawa A. Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2. J Biol Chem. 1983 Mar 10;258(5):2923–2928. [PubMed] [Google Scholar]
  30. Noda Y., Nishikawa S., Shiozuka K., Kadokura H., Nakajima H., Yoda K., Katayama Y., Morohoshi N., Haraguchi T., Yamasaki M. Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis. J Bacteriol. 1990 May;172(5):2704–2709. doi: 10.1128/jb.172.5.2704-2709.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Nörtemann B., Baumgarten J., Rast H. G., Knackmuss H. J. Bacterial communities degrading amino- and hydroxynaphthalene-2-sulfonates. Appl Environ Microbiol. 1986 Nov;52(5):1195–1202. doi: 10.1128/aem.52.5.1195-1202.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Patel T. R., Barnsley E. A. Naphthalene metabolism by pseudomonads: purification and properties of 1,2-dihydroxynaphthalene oxygenase. J Bacteriol. 1980 Aug;143(2):668–673. doi: 10.1128/jb.143.2.668-673.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Pfeifer O., Pelletier I., Altenbuchner J., van Pée K. H. Molecular cloning and sequencing of a non-haem bromoperoxidase gene from Streptomyces aureofaciens ATCC 10762. J Gen Microbiol. 1992 Jun;138(6):1123–1131. doi: 10.1099/00221287-138-6-1123. [DOI] [PubMed] [Google Scholar]
  34. Roper D. I., Cooper R. A. Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C. FEBS Lett. 1990 Nov 26;275(1-2):53–57. doi: 10.1016/0014-5793(90)81437-s. [DOI] [PubMed] [Google Scholar]
  35. Saeki Y., Nozaki M., Senoh S. Cleavage of pyrogallol by non-heme iron-containing dioxygenases. J Biol Chem. 1980 Sep 25;255(18):8465–8471. [PubMed] [Google Scholar]
  36. Sala-Trepat J. M., Evans W. C. The meta cleavage of catechol by Azotobacter species. 4-Oxalocrotonate pathway. Eur J Biochem. 1971 Jun 11;20(3):400–413. doi: 10.1111/j.1432-1033.1971.tb01406.x. [DOI] [PubMed] [Google Scholar]
  37. Studier F. W., Moffatt B. A. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol. 1986 May 5;189(1):113–130. doi: 10.1016/0022-2836(86)90385-2. [DOI] [PubMed] [Google Scholar]
  38. Tabor S., Richardson C. C. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci U S A. 1985 Feb;82(4):1074–1078. doi: 10.1073/pnas.82.4.1074. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Taira K., Hayase N., Arimura N., Yamashita S., Miyazaki T., Furukawa K. Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1. Biochemistry. 1988 May 31;27(11):3990–3996. doi: 10.1021/bi00411a015. [DOI] [PubMed] [Google Scholar]
  40. Wieser M., Eberspächer J., Vogler B., Lingens F. Metabolism of 4-chlorophenol by Azotobacter sp. GP1: structure of the meta cleavage product of 4-chlorocatechol. FEMS Microbiol Lett. 1994 Feb 1;116(1):73–78. doi: 10.1111/j.1574-6968.1994.tb06678.x. [DOI] [PubMed] [Google Scholar]

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