Abstract
A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) and its specific receptor protein control streptomycin production, streptomycin resistance, and aerial mycelium formation in Streptomyces griseus. The A-factor receptor protein (ArpA) was purified from a cell lysate of S. griseus IFO 13350. The NH2-terminal amino acid sequences of ArpA and lysyl endopeptidase-generated fragments were determined for the purpose of preparing oligonucleotide primers for cloning arpA by the PCR method. The arpA gene cloned in this way directed the synthesis of a protein having A-factor-specific binding activity when expressed in Escherichia coli under the control of the T7 promoter. The arpA gene was thus concluded to encode a 276-amino-acid protein with a calculated molecular mass of 29.1 kDa, as determined by nucleotide sequencing. The A-factor-binding activity was observed with a homodimer of ArpA. The NH2-terminal portion of ArpA contained an alpha-helix-turn-alpha-helix DNA-binding motif that showed great similarity to those of many DNA-binding proteins, which suggests that it exerts its regulatory function for the various phenotypes by directly binding to a certain key gene(s). Although a mutant strain deficient in both the ArpA protein and A-factor production overproduces streptomycin and forms aerial mycelium and spores earlier than the wild-type strain because of repressor-like behavior of ArpA, introduction of arpA into this mutant abolished simultaneously its streptomycin production and aerial mycelium formation. All of these data are consistent with the idea that ArpA acts as a repressor-type regulator for secondary metabolite formation and morphogenesis during the early growth phase and A-factor at a certain critical intracellular concentration releases the derepression, thus leading to the onset of secondary metabolism and aerial mycelium formation. The presence of ArpA-like proteins among Streptomyces spp., as revealed by PCR, together with the presence of A-factor-like compounds, suggests that a hormonal control similar to the A-factor system exists in many species of this genus.
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- Anisova L. N., Blinova I. N., Efremenkova O. V., Koz'min Iu P., Onoprienko V. V. Reguliatory razvitiia Streptomyces coelicolor A3(2). Izv Akad Nauk SSSR Biol. 1984 Jan-Feb;(1):98–108. [PubMed] [Google Scholar]
- Beppu T. Secondary metabolites as chemical signals for cellular differentiation. Gene. 1992 Jun 15;115(1-2):159–165. doi: 10.1016/0378-1119(92)90554-3. [DOI] [PubMed] [Google Scholar]
- Bibb M. J., Findlay P. R., Johnson M. W. The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. Gene. 1984 Oct;30(1-3):157–166. doi: 10.1016/0378-1119(84)90116-1. [DOI] [PubMed] [Google Scholar]
- Dodd I. B., Egan J. B. Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins. J Mol Biol. 1987 Apr 5;194(3):557–564. doi: 10.1016/0022-2836(87)90681-4. [DOI] [PubMed] [Google Scholar]
- Efremenkova O. V., Anisova L. N., Bartoshevich Iu E. Reguliatory differentsiatsii aktinomitsetov. Antibiot Med Biotekhnol. 1985 Sep;30(9):687–707. [PubMed] [Google Scholar]
- Efremenkova O. V., Anisova L. N., Khokhlov A. S. Vydelenie fazlichnymi aktinomitsetami veshchestv, vyzyvaiushchikh sporuliatsiiu u asporogennogo mutanta Streptomyces griseus. Mikrobiologiia. 1979 Nov-Dec;48(6):999–1003. [PubMed] [Google Scholar]
- Eritt I., Gräfe U., Fleck W. F. A screening method for autoregulators of anthracycline-producing streptomycetes. Z Allg Mikrobiol. 1982;22(2):91–96. doi: 10.1002/jobm.3630220203. [DOI] [PubMed] [Google Scholar]
- Eritt I., Gräfe U., Fleck W. F. Inducers of both cytodifferentiation and anthracycline biosynthesis of Streptomyces griseus and their occurrence in actinomycetes and other microorganisms. Z Allg Mikrobiol. 1984;24(1):3–12. doi: 10.1002/jobm.3630240102. [DOI] [PubMed] [Google Scholar]
- Grunstein M., Hogness D. S. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci U S A. 1975 Oct;72(10):3961–3965. doi: 10.1073/pnas.72.10.3961. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gräfe U., Schade W., Eritt I., Fleck W. F., Radics L. A new inducer of anthracycline biosynthesis from Streptomyces viridochromogenes. J Antibiot (Tokyo) 1982 Dec;35(12):1722–1723. doi: 10.7164/antibiotics.35.1722. [DOI] [PubMed] [Google Scholar]
- Hara O., Beppu T. Induction of streptomycin-inactivating enzyme by A-factor in Streptomyces griseus. J Antibiot (Tokyo) 1982 Sep;35(9):1208–1215. doi: 10.7164/antibiotics.35.1208. [DOI] [PubMed] [Google Scholar]
- Hara O., Beppu T. Mutants blocked in streptomycin production in Streptomyces griseus - the role of A-factor. J Antibiot (Tokyo) 1982 Mar;35(3):349–358. doi: 10.7164/antibiotics.35.349. [DOI] [PubMed] [Google Scholar]
- Hara O., Horinouchi S., Uozumi T., Beppu T. Genetic analysis of A-factor synthesis in Streptomyces coelicolor A3(2) and Streptomyces griseus. J Gen Microbiol. 1983 Sep;129(9):2939–2944. doi: 10.1099/00221287-129-9-2939. [DOI] [PubMed] [Google Scholar]
- Hopwood D. A., Kieser T., Wright H. M., Bibb M. J. Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. J Gen Microbiol. 1983 Jul;129(7):2257–2269. doi: 10.1099/00221287-129-7-2257. [DOI] [PubMed] [Google Scholar]
- Horinouchi S., Beppu T. A-factor as a microbial hormone that controls cellular differentiation and secondary metabolism in Streptomyces griseus. Mol Microbiol. 1994 Jun;12(6):859–864. doi: 10.1111/j.1365-2958.1994.tb01073.x. [DOI] [PubMed] [Google Scholar]
- Horinouchi S., Beppu T. Autoregulatory factors and communication in actinomycetes. Annu Rev Microbiol. 1992;46:377–398. doi: 10.1146/annurev.mi.46.100192.002113. [DOI] [PubMed] [Google Scholar]
- Horinouchi S., Beppu T. Autoregulatory factors of secondary metabolism and morphogenesis in actinomycetes. Crit Rev Biotechnol. 1990;10(3):191–204. doi: 10.3109/07388559009038207. [DOI] [PubMed] [Google Scholar]
- Horinouchi S., Beppu T. Regulation of secondary metabolism and cell differentiation in Streptomyces: A-factor as a microbial hormone and the AfsR protein as a component of a two-component regulatory system. Gene. 1992 Jun 15;115(1-2):167–172. doi: 10.1016/0378-1119(92)90555-4. [DOI] [PubMed] [Google Scholar]
- Horinouchi S., Kumada Y., Beppu T. Unstable genetic determinant of A-factor biosynthesis in streptomycin-producing organisms: cloning and characterization. J Bacteriol. 1984 May;158(2):481–487. doi: 10.1128/jb.158.2.481-487.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kakinuma S., Takada Y., Ikeda H., Tanaka H., Omura S., Hopwood D. A. Cloning of large DNA fragments, which hybridize with actinorhodin biosynthesis genes, from kalafungin and nanaomycin A methyl ester producers and identification of genes for kalafungin biosynthesis of the kalafungin producer. J Antibiot (Tokyo) 1991 Sep;44(9):995–1005. doi: 10.7164/antibiotics.44.995. [DOI] [PubMed] [Google Scholar]
- Khokhlov A. S., Tovarova I. I., Borisova L. N., Pliner S. A., Shevchenko L. N., Kornitskaia E. Ia, Ivkina N. S., Rapoport I. A. A-faktor, obespechivaiushchii biosintez streptomitsina mutantnym shtammom Actinomyces streptomycini. Dokl Akad Nauk SSSR. 1967 Nov-Dec;177(1):232–235. [PubMed] [Google Scholar]
- Kim H. S., Nihira T., Tada H., Yanagimoto M., Yamada Y. Identification of binding protein of virginiae butanolide C, an autoregulator in virginiamycin production, from Streptomyces virginiae. J Antibiot (Tokyo) 1989 May;42(5):769–778. doi: 10.7164/antibiotics.42.769. [DOI] [PubMed] [Google Scholar]
- Klein J. R., Henrich B., Plapp R. Molecular analysis and nucleotide sequence of the envCD operon of Escherichia coli. Mol Gen Genet. 1991 Nov;230(1-2):230–240. doi: 10.1007/BF00290673. [DOI] [PubMed] [Google Scholar]
- Kondo K., Higuchi Y., Sakuda S., Nihira T., Yamada Y. New virginiae butanolides from Streptomyces virginiae. J Antibiot (Tokyo) 1989 Dec;42(12):1873–1876. doi: 10.7164/antibiotics.42.1873. [DOI] [PubMed] [Google Scholar]
- Kunkel T. A., Roberts J. D., Zakour R. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 1987;154:367–382. doi: 10.1016/0076-6879(87)54085-x. [DOI] [PubMed] [Google Scholar]
- Lamark T., Kaasen I., Eshoo M. W., Falkenberg P., McDougall J., Strøm A. R. DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli. Mol Microbiol. 1991 May;5(5):1049–1064. doi: 10.1111/j.1365-2958.1991.tb01877.x. [DOI] [PubMed] [Google Scholar]
- Ma D., Cook D. N., Alberti M., Pon N. G., Nikaido H., Hearst J. E. Molecular cloning and characterization of acrA and acrE genes of Escherichia coli. J Bacteriol. 1993 Oct;175(19):6299–6313. doi: 10.1128/jb.175.19.6299-6313.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Messing J. New M13 vectors for cloning. Methods Enzymol. 1983;101:20–78. doi: 10.1016/0076-6879(83)01005-8. [DOI] [PubMed] [Google Scholar]
- Miyake K., Horinouchi S., Yoshida M., Chiba N., Mori K., Nogawa N., Morikawa N., Beppu T. Detection and properties of A-factor-binding protein from Streptomyces griseus. J Bacteriol. 1989 Aug;171(8):4298–4302. doi: 10.1128/jb.171.8.4298-4302.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miyake K., Kuzuyama T., Horinouchi S., Beppu T. The A-factor-binding protein of Streptomyces griseus negatively controls streptomycin production and sporulation. J Bacteriol. 1990 Jun;172(6):3003–3008. doi: 10.1128/jb.172.6.3003-3008.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Okamoto S., Nakamura K., Nihira T., Yamada Y. Virginiae butanolide binding protein from Streptomyces virginiae. Evidence that VbrA is not the virginiae butanolide binding protein and reidentification of the true binding protein. J Biol Chem. 1995 May 19;270(20):12319–12326. doi: 10.1074/jbc.270.20.12319. [DOI] [PubMed] [Google Scholar]
- Pabo C. O., Sauer R. T. Protein-DNA recognition. Annu Rev Biochem. 1984;53:293–321. doi: 10.1146/annurev.bi.53.070184.001453. [DOI] [PubMed] [Google Scholar]
- Rouch D. A., Cram D. S., DiBerardino D., Littlejohn T. G., Skurray R. A. Efflux-mediated antiseptic resistance gene qacA from Staphylococcus aureus: common ancestry with tetracycline- and sugar-transport proteins. Mol Microbiol. 1990 Dec;4(12):2051–2062. doi: 10.1111/j.1365-2958.1990.tb00565.x. [DOI] [PubMed] [Google Scholar]
- Ruengjitchatchawalya M., Nihira T., Yamada Y. Purification and characterization of the IM-2-binding protein from Streptomyces sp. strain FRI-5. J Bacteriol. 1995 Feb;177(3):551–557. doi: 10.1128/jb.177.3.551-557.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
- Studier F. W., Moffatt B. A. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol. 1986 May 5;189(1):113–130. doi: 10.1016/0022-2836(86)90385-2. [DOI] [PubMed] [Google Scholar]
- Ward J. M., Janssen G. R., Kieser T., Bibb M. J., Buttner M. J., Bibb M. J. Construction and characterisation of a series of multi-copy promoter-probe plasmid vectors for Streptomyces using the aminoglycoside phosphotransferase gene from Tn5 as indicator. Mol Gen Genet. 1986 Jun;203(3):468–478. doi: 10.1007/BF00422072. [DOI] [PubMed] [Google Scholar]
- Yamada Y., Sugamura K., Kondo K., Yanagimoto M., Okada H. The structure of inducing factors for virginiamycin production in Streptomyces virginiae. J Antibiot (Tokyo) 1987 Apr;40(4):496–504. doi: 10.7164/antibiotics.40.496. [DOI] [PubMed] [Google Scholar]
- Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
- Zoller M. J., Smith M. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors. Methods Enzymol. 1983;100:468–500. doi: 10.1016/0076-6879(83)00074-9. [DOI] [PubMed] [Google Scholar]