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. 1995 Dec;177(23):6993–6998. doi: 10.1128/jb.177.23.6993-6998.1995

Fragmentations of the large-subunit rRNA in the family Rhizobiaceae.

S Selenska-Pobell 1, E Evguenieva-Hackenberg 1
PMCID: PMC177572  PMID: 7592497

Abstract

A 130-nucleotide-long rRNA species corresponding to the 5' end of the 23S rRNA gene was found in 96 strains belonging to different Rhizobium, Bradyrhizobium, and Agrobacterium species. Additional fragmentation in the central region of the large-subunit rRNA occurred in all agrobacteria, except Agrobacterium vitis, and in most Rhizobium leguminosarum and Rhizobium etli strains but did not occur in any of the other rhizobia and bradyrhizobia studied.

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Selected References

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  1. Beringer J. E. R factor transfer in Rhizobium leguminosarum. J Gen Microbiol. 1974 Sep;84(1):188–198. doi: 10.1099/00221287-84-1-188. [DOI] [PubMed] [Google Scholar]
  2. Brosius J., Dull T. J., Noller H. F. Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A. 1980 Jan;77(1):201–204. doi: 10.1073/pnas.77.1.201. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Burgin A. B., Parodos K., Lane D. J., Pace N. R. The excision of intervening sequences from Salmonella 23S ribosomal RNA. Cell. 1990 Feb 9;60(3):405–414. doi: 10.1016/0092-8674(90)90592-3. [DOI] [PubMed] [Google Scholar]
  4. Dryden S. C., Kaplan S. Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides. Nucleic Acids Res. 1990 Dec 25;18(24):7267–7277. doi: 10.1093/nar/18.24.7267. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Gutell R. R., Gray M. W., Schnare M. N. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993. Nucleic Acids Res. 1993 Jul 1;21(13):3055–3074. doi: 10.1093/nar/21.13.3055. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Hsu D., Zee Y. C., Ingraham J., Shih L. M. Diversity of cleavage patterns of Salmonella 23S rRNA. J Gen Microbiol. 1992 Jan;138(1):199–203. doi: 10.1099/00221287-138-1-199. [DOI] [PubMed] [Google Scholar]
  7. Höpfl P., Ludwig W., Schleifer K. H., Larsen N. The 23S ribosomal RNA higher-order structure of Pseudomonas cepacia and other prokaryotes. Eur J Biochem. 1989 Nov 6;185(2):355–364. doi: 10.1111/j.1432-1033.1989.tb15123.x. [DOI] [PubMed] [Google Scholar]
  8. Jacq B. Sequence homologies between eukaryotic 5.8S rRNA and the 5' end of prokaryotic 23S rRNa: evidences for a common evolutionary origin. Nucleic Acids Res. 1981 Jun 25;9(12):2913–2932. doi: 10.1093/nar/9.12.2913. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kordes E., Jock S., Fritsch J., Bosch F., Klug G. Cloning of a gene involved in rRNA precursor processing and 23S rRNA cleavage in Rhodobacter capsulatus. J Bacteriol. 1994 Feb;176(4):1121–1127. doi: 10.1128/jb.176.4.1121-1127.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Krishnapillai V., Nash J., Lanka E. Insertion mutations in the promiscuous IncP-1 plasmid R18 which affect its host range between Pseudomonas species. Plasmid. 1984 Nov;12(3):170–180. doi: 10.1016/0147-619x(84)90041-6. [DOI] [PubMed] [Google Scholar]
  11. Ludwig W., Schleifer K. H. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev. 1994 Oct;15(2-3):155–173. doi: 10.1111/j.1574-6976.1994.tb00132.x. [DOI] [PubMed] [Google Scholar]
  12. Masterson R. V., Prakash R. K., Atherly A. G. Conservation of symbiotic nitrogen fixation gene sequences in Rhizobium japonicum and Bradyrhizobium japonicum. J Bacteriol. 1985 Jul;163(1):21–26. doi: 10.1128/jb.163.1.21-26.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Ralph D., McClelland M. Intervening sequence with conserved open reading frame in eubacterial 23S rRNA genes. Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6864–6868. doi: 10.1073/pnas.90.14.6864. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Trust T. J., Logan S. M., Gustafson C. E., Romaniuk P. J., Kim N. W., Chan V. L., Ragan M. A., Guerry P., Gutell R. R. Phylogenetic and molecular characterization of a 23S rRNA gene positions the genus Campylobacter in the epsilon subdivision of the Proteobacteria and shows that the presence of transcribed spacers is common in Campylobacter spp. J Bacteriol. 1994 Aug;176(15):4597–4609. doi: 10.1128/jb.176.15.4597-4609.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. de Lanversin G., Jacq B. Sequence and secondary structure of the central domain of Drosophila 26S rRNA: a universal model for the central domain of the large rRNA containing the region in which the central break may happen. J Mol Evol. 1989 May;28(5):403–417. doi: 10.1007/BF02603076. [DOI] [PubMed] [Google Scholar]

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