Abstract
The aceBAK operon was partially induced by a multicopy plasmid which carried the promoter region of the gene which encodes its repressor, iclR. Gel shift and DNase I analyses demonstrated that IclR binds to its own promoter. Disruption of iclR increased the expression of an iclR::lacZ operon fusion. Although aceBAK and iclR are both regulated by IclR, aceBAK expression responds to the carbon source, while expression of iclR does not.
Full Text
The Full Text of this article is available as a PDF (349.9 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Borthwick A. C., Holms W. H., Nimmo H. G. The phosphorylation of Escherichia coli isocitrate dehydrogenase in intact cells. Biochem J. 1984 Sep 15;222(3):797–804. doi: 10.1042/bj2220797. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chung T., Klumpp D. J., LaPorte D. C. Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map. J Bacteriol. 1988 Jan;170(1):386–392. doi: 10.1128/jb.170.1.386-392.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chung T., Resnik E., Stueland C., LaPorte D. C. Relative expression of the products of glyoxylate bypass operon: contributions of transcription and translation. J Bacteriol. 1993 Jul;175(14):4572–4575. doi: 10.1128/jb.175.14.4572-4575.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cortay J. C., Nègre D., Galinier A., Duclos B., Perrière G., Cozzone A. J. Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor. EMBO J. 1991 Mar;10(3):675–679. doi: 10.1002/j.1460-2075.1991.tb07996.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Domdey H., Apostol B., Lin R. J., Newman A., Brody E., Abelson J. Lariat structures are in vivo intermediates in yeast pre-mRNA splicing. Cell. 1984 Dec;39(3 Pt 2):611–621. doi: 10.1016/0092-8674(84)90468-9. [DOI] [PubMed] [Google Scholar]
- Fouser L. A., Friesen J. D. Mutations in a yeast intron demonstrate the importance of specific conserved nucleotides for the two stages of nuclear mRNA splicing. Cell. 1986 Apr 11;45(1):81–93. doi: 10.1016/0092-8674(86)90540-4. [DOI] [PubMed] [Google Scholar]
- Freundlich M., Ramani N., Mathew E., Sirko A., Tsui P. The role of integration host factor in gene expression in Escherichia coli. Mol Microbiol. 1992 Sep;6(18):2557–2563. doi: 10.1111/j.1365-2958.1992.tb01432.x. [DOI] [PubMed] [Google Scholar]
- Garnak M., Reeves H. C. Phosphorylation of Isocitrate dehydrogenase of Escherichia coli. Science. 1979 Mar 16;203(4385):1111–1112. doi: 10.1126/science.34215. [DOI] [PubMed] [Google Scholar]
- KORNBERG H. L., MADSEN N. B. Synthesis of C4-dicarboxylic acids from acetate by a glyoxylate bypass of the tricarboxylic acid cycle. Biochim Biophys Acta. 1957 Jun;24(3):651–653. doi: 10.1016/0006-3002(57)90268-8. [DOI] [PubMed] [Google Scholar]
- Kornberg H. L. The regulation of anaplerotic enzymes in E. coli. Bull Soc Chim Biol (Paris) 1967 Dec 18;49(11):1479–1490. [PubMed] [Google Scholar]
- Kornberg H. L. The role and control of the glyoxylate cycle in Escherichia coli. Biochem J. 1966 Apr;99(1):1–11. doi: 10.1042/bj0990001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- LaPorte D. C., Koshland D. E., Jr A protein with kinase and phosphatase activities involved in regulation of tricarboxylic acid cycle. Nature. 1982 Dec 2;300(5891):458–460. doi: 10.1038/300458a0. [DOI] [PubMed] [Google Scholar]
- LaPorte D. C., Koshland D. E., Jr Phosphorylation of isocitrate dehydrogenase as a demonstration of enhanced sensitivity in covalent regulation. Nature. 1983 Sep 22;305(5932):286–290. doi: 10.1038/305286a0. [DOI] [PubMed] [Google Scholar]
- LaPorte D. C., Walsh K., Koshland D. E., Jr The branch point effect. Ultrasensitivity and subsensitivity to metabolic control. J Biol Chem. 1984 Nov 25;259(22):14068–14075. [PubMed] [Google Scholar]
- Laporte D. C., Stueland C. S., Ikeda T. P. Isocitrate dehydrogenase kinase/phosphatase. Biochimie. 1989 Sep-Oct;71(9-10):1051–1057. doi: 10.1016/0300-9084(89)90110-7. [DOI] [PubMed] [Google Scholar]
- Maloy S. R., Nunn W. D. Genetic regulation of the glyoxylate shunt in Escherichia coli K-12. J Bacteriol. 1982 Jan;149(1):173–180. doi: 10.1128/jb.149.1.173-180.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Neidhardt F. C., Bloch P. L., Smith D. F. Culture medium for enterobacteria. J Bacteriol. 1974 Sep;119(3):736–747. doi: 10.1128/jb.119.3.736-747.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nègre D., Cortay J. C., Galinier A., Sauve P., Cozzone A. J. Specific interactions between the IclR repressor of the acetate operon of Escherichia coli and its operator. J Mol Biol. 1992 Nov 5;228(1):23–29. doi: 10.1016/0022-2836(92)90488-6. [DOI] [PubMed] [Google Scholar]
- Parker B., Marinus M. G. A simple and rapid method to obtain substitution mutations in Escherichia coli: isolation of a dam deletion/insertion mutation. Gene. 1988 Dec 20;73(2):531–535. doi: 10.1016/0378-1119(88)90517-3. [DOI] [PubMed] [Google Scholar]
- Resnik E., LaPorte D. C. Introduction of single-copy sequences into the chromosome of Escherichia coli: application to gene and operon fusions. Gene. 1991 Oct 30;107(1):19–25. doi: 10.1016/0378-1119(91)90292-j. [DOI] [PubMed] [Google Scholar]
- Sanger F., Coulson A. R. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol. 1975 May 25;94(3):441–448. doi: 10.1016/0022-2836(75)90213-2. [DOI] [PubMed] [Google Scholar]
- Shelness G. S., Williams D. L. Secondary structure analysis of apolipoprotein II mRNA using enzymatic probes and reverse transcriptase. Evaluation of primer extension for high resolution structure mapping of mRNA. J Biol Chem. 1985 Jul 15;260(14):8637–8646. [PubMed] [Google Scholar]
- Shih H. M., Towle H. C. Definition of the carbohydrate response element of the rat S14 gene. Evidence for a common factor required for carbohydrate regulation of hepatic genes. J Biol Chem. 1992 Jul 5;267(19):13222–13228. [PubMed] [Google Scholar]
- Summers W. C. A simple method for extraction of RNA from E. coli utilizing diethyl pyrocarbonate. Anal Biochem. 1970 Feb;33(2):459–463. doi: 10.1016/0003-2697(70)90316-7. [DOI] [PubMed] [Google Scholar]
- Sunnarborg A., Klumpp D., Chung T., LaPorte D. C. Regulation of the glyoxylate bypass operon: cloning and characterization of iclR. J Bacteriol. 1990 May;172(5):2642–2649. doi: 10.1128/jb.172.5.2642-2649.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]