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. 1996 Jan;178(2):484–489. doi: 10.1128/jb.178.2.484-489.1996

Thermostable chemotaxis proteins from the hyperthermophilic bacterium Thermotoga maritima.

R V Swanson 1, M G Sanna 1, M I Simon 1
PMCID: PMC177682  PMID: 8550470

Abstract

An expressed sequence tag homologous to cheA was previously isolated by random sequencing of Thermotoga maritima cDNA clones (C. W. Kim, P. Markiewicz, J. J. Lee, C. F. Schierle, and J. H. Miller, J. Mol. Biol. 231: 960-981, 1993). Oligonucleotides complementary to this sequence tag were synthesized and used to identify a clone from a T. maritima lambda library by using PCR. Two partially overlapping restriction fragments were subcloned from the lambda clone and sequenced. The resulting 5,251-bp sequence contained five open reading frames, including cheA, cheW, and cheY. In addition to the chemotaxis genes, the fragment also encodes a putative protein isoaspartyl methyltransferase and an open reading frame of unknown function. Both the cheW and cheY genes were individually cloned into inducible Escherichia coli expression vectors. Upon induction, both proteins were synthesized at high levels. T. maritima CheW and CheY were both soluble and were easily purified from the bulk of the endogenous E. coli protein by heat treatment at 80 degrees C for 10 min. CheY prepared in this way was shown to be active by the demonstration of Mg(2+)-dependent autophosphorylation with [32P]acetyl phosphate. In E. coli, CheW mediates the physical coupling of the receptors to the kinase CheA. The availability of a thermostable homolog of CheW opens the possibility of structural characterization of this small coupling protein, which is among the least well characterized proteins in the bacterial chemotaxis signal transduction pathway.

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Selected References

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  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
  2. Bischoff D. S., Bourret R. B., Kirsch M. L., Ordal G. W. Purification and characterization of Bacillus subtilis CheY. Biochemistry. 1993 Sep 7;32(35):9256–9261. doi: 10.1021/bi00086a035. [DOI] [PubMed] [Google Scholar]
  3. Bischoff D. S., Ordal G. W. Bacillus subtilis chemotaxis: a deviation from the Escherichia coli paradigm. Mol Microbiol. 1992 Jan;6(1):23–28. doi: 10.1111/j.1365-2958.1992.tb00833.x. [DOI] [PubMed] [Google Scholar]
  4. Bischoff D. S., Ordal G. W. Sequence and characterization of Bacillus subtilis CheB, a homolog of Escherichia coli CheY, and its role in a different mechanism of chemotaxis. J Biol Chem. 1991 Jul 5;266(19):12301–12305. [PubMed] [Google Scholar]
  5. Blamey J. M., Adams M. W. Characterization of an ancestral type of pyruvate ferredoxin oxidoreductase from the hyperthermophilic bacterium, Thermotoga maritima. Biochemistry. 1994 Feb 1;33(4):1000–1007. doi: 10.1021/bi00170a019. [DOI] [PubMed] [Google Scholar]
  6. Borkovich K. A., Kaplan N., Hess J. F., Simon M. I. Transmembrane signal transduction in bacterial chemotaxis involves ligand-dependent activation of phosphate group transfer. Proc Natl Acad Sci U S A. 1989 Feb;86(4):1208–1212. doi: 10.1073/pnas.86.4.1208. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Bourret R. B., Davagnino J., Simon M. I. The carboxy-terminal portion of the CheA kinase mediates regulation of autophosphorylation by transducer and CheW. J Bacteriol. 1993 Apr;175(7):2097–2101. doi: 10.1128/jb.175.7.2097-2101.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Bourret R. B., Hess J. F., Simon M. I. Conserved aspartate residues and phosphorylation in signal transduction by the chemotaxis protein CheY. Proc Natl Acad Sci U S A. 1990 Jan;87(1):41–45. doi: 10.1073/pnas.87.1.41. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Brennan T. V., Anderson J. W., Jia Z., Waygood E. B., Clarke S. Repair of spontaneously deamidated HPr phosphocarrier protein catalyzed by the L-isoaspartate-(D-aspartate) O-methyltransferase. J Biol Chem. 1994 Oct 7;269(40):24586–24595. [PubMed] [Google Scholar]
  10. Bronnenmeier K., Kern A., Liebl W., Staudenbauer W. L. Purification of Thermotoga maritima enzymes for the degradation of cellulosic materials. Appl Environ Microbiol. 1995 Apr;61(4):1399–1407. doi: 10.1128/aem.61.4.1399-1407.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Cohen S. P., Hächler H., Levy S. B. Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli. J Bacteriol. 1993 Mar;175(5):1484–1492. doi: 10.1128/jb.175.5.1484-1492.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Fuhrer D. K., Ordal G. W. Bacillus subtilis CheN, a homolog of CheA, the central regulator of chemotaxis in Escherichia coli. J Bacteriol. 1991 Dec;173(23):7443–7448. doi: 10.1128/jb.173.23.7443-7448.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Gegner J. A., Graham D. R., Roth A. F., Dahlquist F. W. Assembly of an MCP receptor, CheW, and kinase CheA complex in the bacterial chemotaxis signal transduction pathway. Cell. 1992 Sep 18;70(6):975–982. doi: 10.1016/0092-8674(92)90247-a. [DOI] [PubMed] [Google Scholar]
  14. Greck M., Platzer J., Sourjik V., Schmitt R. Analysis of a chemotaxis operon in Rhizobium meliloti. Mol Microbiol. 1995 Mar;15(6):989–1000. doi: 10.1111/j.1365-2958.1995.tb02274.x. [DOI] [PubMed] [Google Scholar]
  15. Hess J. F., Bourret R. B., Simon M. I. Histidine phosphorylation and phosphoryl group transfer in bacterial chemotaxis. Nature. 1988 Nov 10;336(6195):139–143. doi: 10.1038/336139a0. [DOI] [PubMed] [Google Scholar]
  16. Kim C. W., Markiewicz P., Lee J. J., Schierle C. F., Miller J. H. Studies of the hyperthermophile Thermotoga maritima by random sequencing of cDNA and genomic libraries. Identification and sequencing of the trpEG (D) operon. J Mol Biol. 1993 Jun 20;231(4):960–981. doi: 10.1006/jmbi.1993.1345. [DOI] [PubMed] [Google Scholar]
  17. Kofoid E. C., Parkinson J. S. Tandem translation starts in the cheA locus of Escherichia coli. J Bacteriol. 1991 Mar;173(6):2116–2119. doi: 10.1128/jb.173.6.2116-2119.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Li J., Swanson R. V., Simon M. I., Weis R. M. The response regulators CheB and CheY exhibit competitive binding to the kinase CheA. Biochemistry. 1995 Nov 14;34(45):14626–14636. doi: 10.1021/bi00045a003. [DOI] [PubMed] [Google Scholar]
  19. Liebl W., Feil R., Gabelsberger J., Kellermann J., Schleifer K. H. Purification and characterization of a novel thermostable 4-alpha-glucanotransferase of Thermotoga maritima cloned in Escherichia coli. Eur J Biochem. 1992 Jul 1;207(1):81–88. doi: 10.1111/j.1432-1033.1992.tb17023.x. [DOI] [PubMed] [Google Scholar]
  20. Lowry D. F., Roth A. F., Rupert P. B., Dahlquist F. W., Moy F. J., Domaille P. J., Matsumura P. Signal transduction in chemotaxis. A propagating conformation change upon phosphorylation of CheY. J Biol Chem. 1994 Oct 21;269(42):26358–26362. [PubMed] [Google Scholar]
  21. Lukat G. S., McCleary W. R., Stock A. M., Stock J. B. Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors. Proc Natl Acad Sci U S A. 1992 Jan 15;89(2):718–722. doi: 10.1073/pnas.89.2.718. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Morrison T. B., Parkinson J. S. Liberation of an interaction domain from the phosphotransfer region of CheA, a signaling kinase of Escherichia coli. Proc Natl Acad Sci U S A. 1994 Jun 7;91(12):5485–5489. doi: 10.1073/pnas.91.12.5485. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Moy F. J., Lowry D. F., Matsumura P., Dahlquist F. W., Krywko J. E., Domaille P. J. Assignments, secondary structure, global fold, and dynamics of chemotaxis Y protein using three- and four-dimensional heteronuclear (13C,15N) NMR spectroscopy. Biochemistry. 1994 Sep 6;33(35):10731–10742. doi: 10.1021/bi00201a022. [DOI] [PubMed] [Google Scholar]
  24. Parkinson J. S., Kofoid E. C. Communication modules in bacterial signaling proteins. Annu Rev Genet. 1992;26:71–112. doi: 10.1146/annurev.ge.26.120192.000443. [DOI] [PubMed] [Google Scholar]
  25. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  26. Sanna M. G., Swanson R. V., Bourret R. B., Simon M. I. Mutations in the chemotactic response regulator, CheY, that confer resistance to the phosphatase activity of CheZ. Mol Microbiol. 1995 Mar;15(6):1069–1079. doi: 10.1111/j.1365-2958.1995.tb02282.x. [DOI] [PubMed] [Google Scholar]
  27. Schuster S. C., Swanson R. V., Alex L. A., Bourret R. B., Simon M. I. Assembly and function of a quaternary signal transduction complex monitored by surface plasmon resonance. Nature. 1993 Sep 23;365(6444):343–347. doi: 10.1038/365343a0. [DOI] [PubMed] [Google Scholar]
  28. Stock A. M., Martinez-Hackert E., Rasmussen B. F., West A. H., Stock J. B., Ringe D., Petsko G. A. Structure of the Mg(2+)-bound form of CheY and mechanism of phosphoryl transfer in bacterial chemotaxis. Biochemistry. 1993 Dec 14;32(49):13375–13380. doi: 10.1021/bi00212a001. [DOI] [PubMed] [Google Scholar]
  29. Stock A., Koshland D. E., Jr, Stock J. Homologies between the Salmonella typhimurium CheY protein and proteins involved in the regulation of chemotaxis, membrane protein synthesis, and sporulation. Proc Natl Acad Sci U S A. 1985 Dec;82(23):7989–7993. doi: 10.1073/pnas.82.23.7989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Swanson R. V., Lowry D. F., Matsumura P., McEvoy M. M., Simon M. I., Dahlquist F. W. Localized perturbations in CheY structure monitored by NMR identify a CheA binding interface. Nat Struct Biol. 1995 Oct;2(10):906–910. doi: 10.1038/nsb1095-906. [DOI] [PubMed] [Google Scholar]
  31. Swanson R. V., Schuster S. C., Simon M. I. Expression of CheA fragments which define domains encoding kinase, phosphotransfer, and CheY binding activities. Biochemistry. 1993 Aug 3;32(30):7623–7629. doi: 10.1021/bi00081a004. [DOI] [PubMed] [Google Scholar]
  32. Volkman B. F., Nohaile M. J., Amy N. K., Kustu S., Wemmer D. E. Three-dimensional solution structure of the N-terminal receiver domain of NTRC. Biochemistry. 1995 Jan 31;34(4):1413–1424. doi: 10.1021/bi00004a036. [DOI] [PubMed] [Google Scholar]
  33. Volz K. Structural conservation in the CheY superfamily. Biochemistry. 1993 Nov 9;32(44):11741–11753. doi: 10.1021/bi00095a001. [DOI] [PubMed] [Google Scholar]
  34. Wrba A., Jaenicke R., Huber R., Stetter K. O. Lactate dehydrogenase from the extreme thermophile Thermotoga maritima. Eur J Biochem. 1990 Feb 22;188(1):195–201. doi: 10.1111/j.1432-1033.1990.tb15388.x. [DOI] [PubMed] [Google Scholar]
  35. Wrba A., Schweiger A., Schultes V., Jaenicke R., Závodszky P. Extremely thermostable D-glyceraldehyde-3-phosphate dehydrogenase from the eubacterium Thermotoga maritima. Biochemistry. 1990 Aug 21;29(33):7584–7592. doi: 10.1021/bi00485a007. [DOI] [PubMed] [Google Scholar]
  36. Zamenhof P. J., Villarejo M. Construction and properties of Escherichia coli strains exhibiting -complementation of -galactosidase fragments in vivo. J Bacteriol. 1972 Apr;110(1):171–178. doi: 10.1128/jb.110.1.171-178.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Zusman D. R., McBride M. J. Sensory transduction in the gliding bacterium Myxococcus xanthus. Mol Microbiol. 1991 Oct;5(10):2323–2329. doi: 10.1111/j.1365-2958.1991.tb02077.x. [DOI] [PubMed] [Google Scholar]

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