Abstract
Depending on the reduction-oxidation state of the cell, some methanogenic bacteria synthesize or hydrolyze 8-hydroxyadenylylated coenzyme F420 (coenzyme F390). These two reactions are catalyzed by coenzyme F390 synthetase and hydrolase, respectively. To gain more insight into the mechanism of the former reaction, coenzyme F390 synthetase from Methanobacterium thermoautotrophicum Marburg was purified 89-fold from cell extract to a specific activity of 0.75 mumol.min-1.mg of protein-1. The monomeric enzyme consisted of a polypeptide with an apparent molecular mass of 41 kDa as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. ftsA, the gene encoding coenzyme F390 synthetase, was cloned and sequenced. It encoded a protein of 377 amino acids with a predicted M(r) of 43,280. FtsA was found to be similar to domains found in the superfamily of peptide synthetases and adenylate-forming enzymes. FtsA was most similar to gramicidin S synthetase II (67% similarity in a 227-amino-acid region) and sigma-(L-alpha-aminoadipyl)-L-cysteine-D-valine synthetase (57% similarity in a 193-amino-acid region). Coenzyme F390 synthetase, however, holds an exceptional position in the superfamily of adenylate-forming enzymes in that it does not activate a carboxyl group of an amino or hydroxy acid but an aromatic hydroxyl group of coenzyme F420.
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- Brown J. W., Daniels C. J., Reeve J. N. Gene structure, organization, and expression in archaebacteria. Crit Rev Microbiol. 1989;16(4):287–338. doi: 10.3109/10408418909105479. [DOI] [PubMed] [Google Scholar]
- Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
- DiMarco A. A., Bobik T. A., Wolfe R. S. Unusual coenzymes of methanogenesis. Annu Rev Biochem. 1990;59:355–394. doi: 10.1146/annurev.bi.59.070190.002035. [DOI] [PubMed] [Google Scholar]
- Eirich L. D., Vogels G. D., Wolfe R. S. Proposed structure for coenzyme F420 from Methanobacterium. Biochemistry. 1978 Oct 31;17(22):4583–4593. doi: 10.1021/bi00615a002. [DOI] [PubMed] [Google Scholar]
- Gloss L. M., Hausinger R. P. Methanogen factor 390 formation: species distribution, reversibility and effects of non-oxidative cellular stresses. Biofactors. 1988 Oct;1(3):237–240. [PubMed] [Google Scholar]
- Gutiérrez S., Díez B., Montenegro E., Martín J. F. Characterization of the Cephalosporium acremonium pcbAB gene encoding alpha-aminoadipyl-cysteinyl-valine synthetase, a large multidomain peptide synthetase: linkage to the pcbC gene as a cluster of early cephalosporin biosynthetic genes and evidence of multiple functional domains. J Bacteriol. 1991 Apr;173(7):2354–2365. doi: 10.1128/jb.173.7.2354-2365.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hausinger R. P., Orme-Johnson W. H., Walsh C. Factor 390 chromophores: phosphodiester between AMP or GMP and methanogen factor 420. Biochemistry. 1985 Mar 26;24(7):1629–1633. doi: 10.1021/bi00328a010. [DOI] [PubMed] [Google Scholar]
- Kengen S. W., von den Hoff H. W., Keltjens J. T., van der Drift C., Vogels G. D. F390 synthetase and F390 hydrolase from Methanobacterium thermoautotrophicum (strain delta H). Biofactors. 1991 Jan;3(1):61–65. [PubMed] [Google Scholar]
- Kengen S. W., von den Hoff H. W., Keltjens J. T., van der Drift C., Vogels G. D. Hydrolysis and reduction of factor 390 by cell extracts of Methanobacterium thermoautotrophicum (strain delta H). J Bacteriol. 1991 Apr;173(7):2283–2288. doi: 10.1128/jb.173.7.2283-2288.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kiener A., König H., Winter J., Leisinger T. Purification and use of Methanobacterium wolfei pseudomurein endopeptidase for lysis of Methanobacterium thermoautotrophicum. J Bacteriol. 1987 Mar;169(3):1010–1016. doi: 10.1128/jb.169.3.1010-1016.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kiener A., Orme-Johnson W. H., Walsh C. T. Reversible conversion of coenzyme F420 to the 8-OH-AMP and 8-OH-GMP esters, F390-A and F390-G, on oxygen exposure and reestablishment of anaerobiosis in Methanobacterium thermoautotrophicum. Arch Microbiol. 1988;150(3):249–253. doi: 10.1007/BF00407788. [DOI] [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Mukhopadhyay B., Purwantini E., Pihl T. D., Reeve J. N., Daniels L. Cloning, sequencing, and transcriptional analysis of the coenzyme F420-dependent methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase gene from Methanobacterium thermoautotrophicum strain Marburg and functional expression in Escherichia coli. J Biol Chem. 1995 Feb 10;270(6):2827–2832. doi: 10.1074/jbc.270.6.2827. [DOI] [PubMed] [Google Scholar]
- Müller B., Allmansberger R., Klein A. Termination of a transcription unit comprising highly expressed genes in the archaebacterium Methanococcus voltae. Nucleic Acids Res. 1985 Sep 25;13(18):6439–6445. doi: 10.1093/nar/13.18.6439. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Palmer J. R., Daniels C. J. A transcriptional reporter for in vivo promoter analysis in the archaeon Haloferax volcanii. Appl Environ Microbiol. 1994 Oct;60(10):3867–3869. doi: 10.1128/aem.60.10.3867-3869.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Purwantini E., Mukhopadhyay B., Spencer R. W., Daniels L. Effect of temperature on the spectral properties of coenzyme F420 and related compounds. Anal Biochem. 1992 Sep;205(2):342–350. doi: 10.1016/0003-2697(92)90446-e. [DOI] [PubMed] [Google Scholar]
- Reeve J. N. Molecular biology of methanogens. Annu Rev Microbiol. 1992;46:165–191. doi: 10.1146/annurev.mi.46.100192.001121. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schlumbohm W., Stein T., Ullrich C., Vater J., Krause M., Marahiel M. A., Kruft V., Wittmann-Liebold B. An active serine is involved in covalent substrate amino acid binding at each reaction center of gramicidin S synthetase. J Biol Chem. 1991 Dec 5;266(34):23135–23141. [PubMed] [Google Scholar]
- Schönheit P., Moll J., Thauer R. K. Nickel, cobalt, and molybdenum requirement for growth of Methanobacterium thermoautotrophicum. Arch Microbiol. 1979 Oct;123(1):105–107. doi: 10.1007/BF00403508. [DOI] [PubMed] [Google Scholar]
- Turgay K., Krause M., Marahiel M. A. Four homologous domains in the primary structure of GrsB are related to domains in a superfamily of adenylate-forming enzymes. Mol Microbiol. 1992 Feb;6(4):529–546. doi: 10.1111/j.1365-2958.1992.tb01498.x. [DOI] [PubMed] [Google Scholar]
- Vermeij P., Detmers F. J., Broers F. J., Keltjens J. T., Van der Drift C. Purification and characterization of coenzyme F390 synthetase from Methanobacterium thermoautotrophicum (strain delta H). Eur J Biochem. 1994 Nov 15;226(1):185–191. doi: 10.1111/j.1432-1033.1994.tb20040.x. [DOI] [PubMed] [Google Scholar]
- Weil C. F., Sherf B. A., Reeve J. N. A comparison of the methyl reductase genes and gene products. Can J Microbiol. 1989 Jan;35(1):101–108. doi: 10.1139/m89-016. [DOI] [PubMed] [Google Scholar]
- Wolfe R. S. My kind of biology. Annu Rev Microbiol. 1991;45:1–35. doi: 10.1146/annurev.mi.45.100191.000245. [DOI] [PubMed] [Google Scholar]
- te Brömmelstroet B. W., Hensgens C. M., Keltjens J. T., van der Drift C., Vogels G. D. Purification and properties of 5,10-methylenetetrahydromethanopterin reductase, a coenzyme F420-dependent enzyme, from Methanobacterium thermoautotrophicum strain delta H. J Biol Chem. 1990 Feb 5;265(4):1852–1857. [PubMed] [Google Scholar]
- van de Wijngaard W. M., vermey P., van der Drift C. Formation of factor 390 by cell extracts of Methanosarcina barkeri. J Bacteriol. 1991 Apr;173(8):2710–2711. doi: 10.1128/jb.173.8.2710-2711.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]