Abstract
The phage shock protein (psp) operon (pspABCE) of Escherichia coli is strongly induced in response to a variety of stressful conditions or agents such as filamentous phage infection, ethanol treatment, osmotic shock, heat shock, and prolonged incubation in stationary phase. Transcription of the psp operon is driven from a sigma54 promoter and stimulated by integration host factor. We report here the identification of a transcriptional activator gene, designated pspF, which controls expression of the psp operon in E. coli. The pspF gene was identified by random miniTn10-tet transposon mutagenesis. Insertion of the transposon into the pspF gene abolished sigma54-dependent induction of the psp operon. The pspF gene is closely linked to the psp operon and is divergently transcribed from one major and two minor sigma 70 promoters, pspF encodes a 37-kDa protein which belongs to the enhancer-binding protein family of sigma54 transcriptional activators. PspF contains a catalytic domain, which in other sigma54 activators would be the central domain, and a C-terminal DNA-binding domain but entirely lacks an N-terminal regulatory domain and is constitutively active. The insertion mutant pspF::mTn10-tet (pspF877) encodes a truncated protein (PspF delta HTH) that lacks the DNA-binding helix-turn-helix (HTH) motif. Although the central catalytic domain is intact, PspF delta HTH at physiological concentration cannot activate psp expression. In the absence of inducing stimuli, multicopy-plasmid-borne PspF or PspF delta HTH overcomes repression of the psp operon mediated by the negative regulator PspA.
Full Text
The Full Text of this article is available as a PDF (413.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aiba H., Adhya S., de Crombrugghe B. Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem. 1981 Nov 25;256(22):11905–11910. [PubMed] [Google Scholar]
- Albright L. M., Huala E., Ausubel F. M. Prokaryotic signal transduction mediated by sensor and regulator protein pairs. Annu Rev Genet. 1989;23:311–336. doi: 10.1146/annurev.ge.23.120189.001523. [DOI] [PubMed] [Google Scholar]
- Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
- Berger D. K., Narberhaus F., Lee H. S., Kustu S. In vitro studies of the domains of the nitrogen fixation regulatory protein NIFA. J Bacteriol. 1995 Jan;177(1):191–199. doi: 10.1128/jb.177.1.191-199.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bergler H., Abraham D., Aschauer H., Turnowsky F. Inhibition of lipid biosynthesis induces the expression of the pspA gene. Microbiology. 1994 Aug;140(Pt 8):1937–1944. doi: 10.1099/13500872-140-8-1937. [DOI] [PubMed] [Google Scholar]
- Boccard F., Prentki P. Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3' end of transcription units. EMBO J. 1993 Dec 15;12(13):5019–5027. doi: 10.1002/j.1460-2075.1993.tb06195.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brissette J. L., Russel M. Secretion and membrane integration of a filamentous phage-encoded morphogenetic protein. J Mol Biol. 1990 Feb 5;211(3):565–580. doi: 10.1016/0022-2836(90)90266-O. [DOI] [PubMed] [Google Scholar]
- Brissette J. L., Russel M., Weiner L., Model P. Phage shock protein, a stress protein of Escherichia coli. Proc Natl Acad Sci U S A. 1990 Feb;87(3):862–866. doi: 10.1073/pnas.87.3.862. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brissette J. L., Weiner L., Ripmaster T. L., Model P. Characterization and sequence of the Escherichia coli stress-induced psp operon. J Mol Biol. 1991 Jul 5;220(1):35–48. doi: 10.1016/0022-2836(91)90379-k. [DOI] [PubMed] [Google Scholar]
- Carlson J. H., Silhavy T. J. Signal sequence processing is required for the assembly of LamB trimers in the outer membrane of Escherichia coli. J Bacteriol. 1993 Jun;175(11):3327–3334. doi: 10.1128/jb.175.11.3327-3334.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Causton H., Py B., McLaren R. S., Higgins C. F. mRNA degradation in Escherichia coli: a novel factor which impedes the exoribonucleolytic activity of PNPase at stem-loop structures. Mol Microbiol. 1994 Nov;14(4):731–741. doi: 10.1111/j.1365-2958.1994.tb01310.x. [DOI] [PubMed] [Google Scholar]
- Chen P., Reitzer L. J. Active contribution of two domains to cooperative DNA binding of the enhancer-binding protein nitrogen regulator I (NtrC) of Escherichia coli: stimulation by phosphorylation and the binding of ATP. J Bacteriol. 1995 May;177(9):2490–2496. doi: 10.1128/jb.177.9.2490-2496.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Collado-Vides J., Magasanik B., Gralla J. D. Control site location and transcriptional regulation in Escherichia coli. Microbiol Rev. 1991 Sep;55(3):371–394. doi: 10.1128/mr.55.3.371-394.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Davis N. G., Boeke J. D., Model P. Fine structure of a membrane anchor domain. J Mol Biol. 1985 Jan 5;181(1):111–121. doi: 10.1016/0022-2836(85)90329-8. [DOI] [PubMed] [Google Scholar]
- Dimri G. P., Rudd K. E., Morgan M. K., Bayat H., Ames G. F. Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria. J Bacteriol. 1992 Jul;174(14):4583–4593. doi: 10.1128/jb.174.14.4583-4593.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eydmann T., Söderbäck E., Jones T., Hill S., Austin S., Dixon R. Transcriptional activation of the nitrogenase promoter in vitro: adenosine nucleotides are required for inhibition of NIFA activity by NIFL. J Bacteriol. 1995 Mar;177(5):1186–1195. doi: 10.1128/jb.177.5.1186-1195.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fischer H. M. Genetic regulation of nitrogen fixation in rhizobia. Microbiol Rev. 1994 Sep;58(3):352–386. doi: 10.1128/mr.58.3.352-386.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Freundlich M., Ramani N., Mathew E., Sirko A., Tsui P. The role of integration host factor in gene expression in Escherichia coli. Mol Microbiol. 1992 Sep;6(18):2557–2563. doi: 10.1111/j.1365-2958.1992.tb01432.x. [DOI] [PubMed] [Google Scholar]
- Friedman D. I., Olson E. J., Carver D., Gellert M. Synergistic effect of himA and gyrB mutations: evidence that him functions control expression of ilv and xyl genes. J Bacteriol. 1984 Feb;157(2):484–489. doi: 10.1128/jb.157.2.484-489.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goosen N., van de Putte P. The regulation of transcription initiation by integration host factor. Mol Microbiol. 1995 Apr;16(1):1–7. doi: 10.1111/j.1365-2958.1995.tb02386.x. [DOI] [PubMed] [Google Scholar]
- Grimm C., Aufsatz W., Panopoulos N. J. The hrpRS locus of Pseudomonas syringae pv. phaseolicola constitutes a complex regulatory unit. Mol Microbiol. 1995 Jan;15(1):155–165. doi: 10.1111/j.1365-2958.1995.tb02230.x. [DOI] [PubMed] [Google Scholar]
- Gu B., Lee J. H., Hoover T. R., Scholl D., Nixon B. T. Rhizobium meliloti DctD, a sigma 54-dependent transcriptional activator, may be negatively controlled by a subdomain in the C-terminal end of its two-component receiver module. Mol Microbiol. 1994 Jul;13(1):51–66. doi: 10.1111/j.1365-2958.1994.tb00401.x. [DOI] [PubMed] [Google Scholar]
- Hirschman J., Wong P. K., Sei K., Keener J., Kustu S. Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor. Proc Natl Acad Sci U S A. 1985 Nov;82(22):7525–7529. doi: 10.1073/pnas.82.22.7525. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huala E., Ausubel F. M. The central domain of Rhizobium meliloti NifA is sufficient to activate transcription from the R. meliloti nifH promoter. J Bacteriol. 1989 Jun;171(6):3354–3365. doi: 10.1128/jb.171.6.3354-3365.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huala E., Stigter J., Ausubel F. M. The central domain of Rhizobium leguminosarum DctD functions independently to activate transcription. J Bacteriol. 1992 Feb;174(4):1428–1431. doi: 10.1128/jb.174.4.1428-1431.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kleckner N., Bender J., Gottesman S. Uses of transposons with emphasis on Tn10. Methods Enzymol. 1991;204:139–180. doi: 10.1016/0076-6879(91)04009-d. [DOI] [PubMed] [Google Scholar]
- Kleerebezem M., Crielaard W., Tommassen J. Involvement of stress protein PspA (phage shock protein A) of Escherichia coli in maintenance of the protonmotive force under stress conditions. EMBO J. 1996 Jan 2;15(1):162–171. [PMC free article] [PubMed] [Google Scholar]
- Kleerebezem M., Tommassen J. Expression of the pspA gene stimulates efficient protein export in Escherichia coli. Mol Microbiol. 1993 Mar;7(6):947–956. doi: 10.1111/j.1365-2958.1993.tb01186.x. [DOI] [PubMed] [Google Scholar]
- Kustu S., Santero E., Keener J., Popham D., Weiss D. Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol Rev. 1989 Sep;53(3):367–376. doi: 10.1128/mr.53.3.367-376.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Labes M., Rastogi V., Watson R., Finan T. M. Symbiotic nitrogen fixation by a nifA deletion mutant of Rhizobium meliloti: the role of an unusual ntrC allele. J Bacteriol. 1993 May;175(9):2662–2673. doi: 10.1128/jb.175.9.2662-2673.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee J. H., Scholl D., Nixon B. T., Hoover T. R. Constitutive ATP hydrolysis and transcription activation by a stable, truncated form of Rhizobium meliloti DCTD, a sigma 54-dependent transcriptional activator. J Biol Chem. 1994 Aug 12;269(32):20401–20409. [PubMed] [Google Scholar]
- Lessl M., Balzer D., Lurz R., Waters V. L., Guiney D. G., Lanka E. Dissection of IncP conjugative plasmid transfer: definition of the transfer region Tra2 by mobilization of the Tra1 region in trans. J Bacteriol. 1992 Apr;174(8):2493–2500. doi: 10.1128/jb.174.8.2493-2500.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lindquist S., Craig E. A. The heat-shock proteins. Annu Rev Genet. 1988;22:631–677. doi: 10.1146/annurev.ge.22.120188.003215. [DOI] [PubMed] [Google Scholar]
- Molina-López J. A., Govantes F., Santero E. Geometry of the process of transcription activation at the sigma 54-dependent nifH promoter of Klebsiella pneumoniae. J Biol Chem. 1994 Oct 14;269(41):25419–25425. [PubMed] [Google Scholar]
- Morett E., Segovia L. The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol. 1993 Oct;175(19):6067–6074. doi: 10.1128/jb.175.19.6067-6074.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Newbury S. F., Smith N. H., Robinson E. C., Hiles I. D., Higgins C. F. Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell. 1987 Jan 30;48(2):297–310. doi: 10.1016/0092-8674(87)90433-8. [DOI] [PubMed] [Google Scholar]
- Ninfa A. J., Reitzer L. J., Magasanik B. Initiation of transcription at the bacterial glnAp2 promoter by purified E. coli components is facilitated by enhancers. Cell. 1987 Sep 25;50(7):1039–1046. doi: 10.1016/0092-8674(87)90170-x. [DOI] [PubMed] [Google Scholar]
- North A. K., Klose K. E., Stedman K. M., Kustu S. Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C. J Bacteriol. 1993 Jul;175(14):4267–4273. doi: 10.1128/jb.175.14.4267-4273.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oppenheim A. B., Rudd K. E., Mendelson I., Teff D. Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli. Mol Microbiol. 1993 Oct;10(1):113–122. doi: 10.1111/j.1365-2958.1993.tb00908.x. [DOI] [PubMed] [Google Scholar]
- Parkinson J. S., Kofoid E. C. Communication modules in bacterial signaling proteins. Annu Rev Genet. 1992;26:71–112. doi: 10.1146/annurev.ge.26.120192.000443. [DOI] [PubMed] [Google Scholar]
- Popham D. L., Szeto D., Keener J., Kustu S. Function of a bacterial activator protein that binds to transcriptional enhancers. Science. 1989 Feb 3;243(4891):629–635. doi: 10.1126/science.2563595. [DOI] [PubMed] [Google Scholar]
- Pérez-Martín J., Rojo F., de Lorenzo V. Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol Rev. 1994 Jun;58(2):268–290. doi: 10.1128/mr.58.2.268-290.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reitzer L. J., Magasanik B. Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell. 1986 Jun 20;45(6):785–792. doi: 10.1016/0092-8674(86)90553-2. [DOI] [PubMed] [Google Scholar]
- Robison K., Gilbert W., Church G. M. Large scale bacterial gene discovery by similarity search. Nat Genet. 1994 Jun;7(2):205–214. doi: 10.1038/ng0694-205. [DOI] [PubMed] [Google Scholar]
- Russel M., Kaźmierczak B. Analysis of the structure and subcellular location of filamentous phage pIV. J Bacteriol. 1993 Jul;175(13):3998–4007. doi: 10.1128/jb.175.13.3998-4007.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schuler G. D., Altschul S. F., Lipman D. J. A workbench for multiple alignment construction and analysis. Proteins. 1991;9(3):180–190. doi: 10.1002/prot.340090304. [DOI] [PubMed] [Google Scholar]
- Stern M. J., Ames G. F., Smith N. H., Robinson E. C., Higgins C. F. Repetitive extragenic palindromic sequences: a major component of the bacterial genome. Cell. 1984 Jul;37(3):1015–1026. doi: 10.1016/0092-8674(84)90436-7. [DOI] [PubMed] [Google Scholar]
- Stern M. J., Prossnitz E., Ames G. F. Role of the intercistronic region in post-transcriptional control of gene expression in the histidine transport operon of Salmonella typhimurium: involvement of REP sequences. Mol Microbiol. 1988 Jan;2(1):141–152. doi: 10.1111/j.1365-2958.1988.tb00015.x. [DOI] [PubMed] [Google Scholar]
- Stock J. B., Ninfa A. J., Stock A. M. Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol Rev. 1989 Dec;53(4):450–490. doi: 10.1128/mr.53.4.450-490.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- VOGEL H. J., BONNER D. M. Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem. 1956 Jan;218(1):97–106. [PubMed] [Google Scholar]
- Wang M. X., Church G. M. A whole genome approach to in vivo DNA-protein interactions in E. coli. Nature. 1992 Dec 10;360(6404):606–610. doi: 10.1038/360606a0. [DOI] [PubMed] [Google Scholar]
- Weiner L., Brissette J. L., Model P. Stress-induced expression of the Escherichia coli phage shock protein operon is dependent on sigma 54 and modulated by positive and negative feedback mechanisms. Genes Dev. 1991 Oct;5(10):1912–1923. doi: 10.1101/gad.5.10.1912. [DOI] [PubMed] [Google Scholar]
- Weiner L., Brissette J. L., Ramani N., Model P. Analysis of the proteins and cis-acting elements regulating the stress-induced phage shock protein operon. Nucleic Acids Res. 1995 Jun 11;23(11):2030–2036. doi: 10.1093/nar/23.11.2030. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weiner L., Model P. Role of an Escherichia coli stress-response operon in stationary-phase survival. Proc Natl Acad Sci U S A. 1994 Mar 15;91(6):2191–2195. doi: 10.1073/pnas.91.6.2191. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yura T., Nagai H., Mori H. Regulation of the heat-shock response in bacteria. Annu Rev Microbiol. 1993;47:321–350. doi: 10.1146/annurev.mi.47.100193.001541. [DOI] [PubMed] [Google Scholar]