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. 1996 Sep;178(18):5533–5536. doi: 10.1128/jb.178.18.5533-5536.1996

Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site.

C E Peña 1, J E Stoner 1, G F Hatfull 1
PMCID: PMC178380  PMID: 8808947

Abstract

Mycobacteriophage L5 integrates into the genome of Mycobacterium smegmatis via site-specific recombination between the phage attP site and the bacterial attB site. These two sites have a 43-bp common core sequence within which strand exchange occurs and which overlaps a tRNAGly gene at attB. We show here that a 29-bp segment of DNA is necessary and sufficient for attB function and identify the positions of strand exchange.

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Selected References

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  1. Campbell A. M. Chromosomal insertion sites for phages and plasmids. J Bacteriol. 1992 Dec;174(23):7495–7499. doi: 10.1128/jb.174.23.7495-7499.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Dupont L., Boizet-Bonhoure B., Coddeville M., Auvray F., Ritzenthaler P. Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum. J Bacteriol. 1995 Feb;177(3):586–595. doi: 10.1128/jb.177.3.586-595.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Gabriel K., Schmid H., Schmidt U., Rausch H. The actinophage RP3 DNA integrates site-specifically into the putative tRNA(Arg)(AGG) gene of Streptomyces rimosus. Nucleic Acids Res. 1995 Jan 11;23(1):58–63. doi: 10.1093/nar/23.1.58. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Hauser M. A., Scocca J. J. Location of the host attachment site for phage HPl within a cluster of Haemophilus influenzae tRNA genes. Nucleic Acids Res. 1990 Sep 11;18(17):5305–5305. doi: 10.1093/nar/18.17.5305. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Hauser M. A., Scocca J. J. Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site. J Bacteriol. 1992 Oct;174(20):6674–6677. doi: 10.1128/jb.174.20.6674-6677.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Hayashi T., Matsumoto H., Ohnishi M., Terawaki Y. Molecular analysis of a cytotoxin-converting phage, phi CTX, of Pseudomonas aeruginosa: structure of the attP-cos-ctx region and integration into the serine tRNA gene. Mol Microbiol. 1993 Mar;7(5):657–667. doi: 10.1111/j.1365-2958.1993.tb01157.x. [DOI] [PubMed] [Google Scholar]
  7. Inouye S., Sunshine M. G., Six E. W., Inouye M. Retronphage phi R73: an E. coli phage that contains a retroelement and integrates into a tRNA gene. Science. 1991 May 17;252(5008):969–971. doi: 10.1126/science.1709758. [DOI] [PubMed] [Google Scholar]
  8. Kitts P. A., Nash H. A. An intermediate in the phage lambda site-specific recombination reaction is revealed by phosphorothioate substitution in DNA. Nucleic Acids Res. 1988 Jul 25;16(14B):6839–6856. doi: 10.1093/nar/16.14.6839. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Kitts P. A., Nash H. A. Bacteriophage lambda site-specific recombination proceeds with a defined order of strand exchanges. J Mol Biol. 1988 Nov 5;204(1):95–107. doi: 10.1016/0022-2836(88)90602-x. [DOI] [PubMed] [Google Scholar]
  10. Kitts P., Richet E., Nash H. A. Lambda integrative recombination: supercoiling, synapsis, and strand exchange. Cold Spring Harb Symp Quant Biol. 1984;49:735–744. doi: 10.1101/sqb.1984.049.01.083. [DOI] [PubMed] [Google Scholar]
  11. Kolot M., Yagil E. Position and direction of strand exchange in bacteriophage HK022 integration. Mol Gen Genet. 1994 Dec 1;245(5):623–627. doi: 10.1007/BF00282225. [DOI] [PubMed] [Google Scholar]
  12. Lee M. H., Hatfull G. F. Mycobacteriophage L5 integrase-mediated site-specific integration in vitro. J Bacteriol. 1993 Nov;175(21):6836–6841. doi: 10.1128/jb.175.21.6836-6841.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lee M. H., Pascopella L., Jacobs W. R., Jr, Hatfull G. F. Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guérin. Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3111–3115. doi: 10.1073/pnas.88.8.3111. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Mizuuchi K., Weisberg R., Enquist L., Mizuuchi M., Buraczynska M., Foeller C., Hsu P. L., Ross W., Landy A. Structure and function of the phage lambda att site: size, int-binding sites, and location of the crossover point. Cold Spring Harb Symp Quant Biol. 1981;45(Pt 1):429–437. doi: 10.1101/sqb.1981.045.01.057. [DOI] [PubMed] [Google Scholar]
  15. Mizuuchi M., Mizuuchi K. The extent of DNA sequence required for a functional bacterial attachment site of phage lambda. Nucleic Acids Res. 1985 Feb 25;13(4):1193–1208. doi: 10.1093/nar/13.4.1193. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Papp I., Dorgai L., Papp P., Jónás E., Olasz F., Orosz L. The bacterial attachment site of the temperate Rhizobium phage 16-3 overlaps the 3' end of a putative proline tRNA gene. Mol Gen Genet. 1993 Aug;240(2):258–264. doi: 10.1007/BF00277064. [DOI] [PubMed] [Google Scholar]
  17. Pierson L. S., 3rd, Kahn M. L. Integration of satellite bacteriophage P4 in Escherichia coli. DNA sequences of the phage and host regions involved in site-specific recombination. J Mol Biol. 1987 Aug 5;196(3):487–496. doi: 10.1016/0022-2836(87)90026-x. [DOI] [PubMed] [Google Scholar]
  18. Reiter W. D., Palm P., Yeats S. Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res. 1989 Mar 11;17(5):1907–1914. doi: 10.1093/nar/17.5.1907. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Smith-Mungo L., Chan I. T., Landy A. Structure of the P22 att site. Conservation and divergence in the lambda motif of recombinogenic complexes. J Biol Chem. 1994 Aug 12;269(32):20798–20805. [PubMed] [Google Scholar]
  20. Snapper S. B., Lugosi L., Jekkel A., Melton R. E., Kieser T., Bloom B. R., Jacobs W. R., Jr Lysogeny and transformation in mycobacteria: stable expression of foreign genes. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6987–6991. doi: 10.1073/pnas.85.18.6987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Stover C. K., de la Cruz V. F., Fuerst T. R., Burlein J. E., Benson L. A., Bennett L. T., Bansal G. P., Young J. F., Lee M. H., Hatfull G. F. New use of BCG for recombinant vaccines. Nature. 1991 Jun 6;351(6326):456–460. doi: 10.1038/351456a0. [DOI] [PubMed] [Google Scholar]

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