Abstract
Downstream of flhA, the Paracoccus denitrificans gene encoding glutathione-dependent formaldehyde dehydrogenase, an open reading frame was identified and called fghA. The gene product of fghA showed appreciable similarity with human esterase D and with the deduced amino acid sequences of open reading frames found in Escherichia coli, Haemophilus influenzae, and Saccharomyces cerevisiae. Mutating fghA strongly reduced S-formylglutathione hydrolase activity. The mutant was unable to grow on methanol and methylamine, indicating that the enzyme is essential for methylotrophic growth. S-Formylglutathione hydrolase appears to be part of a formaldehyde detoxification pathway that is universal in nature.
Full Text
The Full Text of this article is available as a PDF (228.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
- CHANG J. P., MORRIS J. G. Studies on the utilization of nitrate by Micrococcus denitrificans. J Gen Microbiol. 1962 Oct;29:301–310. doi: 10.1099/00221287-29-2-301. [DOI] [PubMed] [Google Scholar]
- Eiberg H., Mohr J. Identity of the polymorphisms for esterase D and S-formylglutathione hydrolase in red blood cells. Hum Genet. 1986 Oct;74(2):174–175. doi: 10.1007/BF00282085. [DOI] [PubMed] [Google Scholar]
- Giffard P. M., Rathsam C., Kwan E., Kwan D. W., Bunny K. L., Koo S. P., Jacques N. A. The ftf gene encoding the cell-bound fructosyltransferase of Streptococcus salivarius ATCC 25975 is preceded by an insertion sequence and followed by FUR1 and clpP homologues. J Gen Microbiol. 1993 May;139(5):913–920. doi: 10.1099/00221287-139-5-913. [DOI] [PubMed] [Google Scholar]
- Gish W., States D. J. Identification of protein coding regions by database similarity search. Nat Genet. 1993 Mar;3(3):266–272. doi: 10.1038/ng0393-266. [DOI] [PubMed] [Google Scholar]
- Harms N., van Spanning R. J. C1 metabolism in Paracoccus denitrificans: genetics of Paracoccus denitrificans. J Bioenerg Biomembr. 1991 Apr;23(2):187–210. doi: 10.1007/BF00762217. [DOI] [PubMed] [Google Scholar]
- Ito K., Takahashi M., Yoshimoto T., Tsuru D. Cloning and high-level expression of the glutathione-independent formaldehyde dehydrogenase gene from Pseudomonas putida. J Bacteriol. 1994 May;176(9):2483–2491. doi: 10.1128/jb.176.9.2483-2491.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kato N., Sakazawa C., Nishizawa T., Tani Y., Yamada H. Purificaton and characterization of S-formylglutathione hydrolase from a methanol-utilizing yeast, Kloeckera sp. No. 2201. Biochim Biophys Acta. 1980 Feb 14;611(2):323–332. doi: 10.1016/0005-2744(80)90068-6. [DOI] [PubMed] [Google Scholar]
- Köstler M., Kleiner D. Assimilation of methylamine by Paracoccus denitrificans involves formaldehyde transport by a specific carrier. FEMS Microbiol Lett. 1989 Nov;53(1-2):1–4. doi: 10.1016/0378-1097(89)90356-x. [DOI] [PubMed] [Google Scholar]
- Lee E. Y., Lee W. H. Molecular cloning of the human esterase D gene, a genetic marker of retinoblastoma. Proc Natl Acad Sci U S A. 1986 Sep;83(17):6337–6341. doi: 10.1073/pnas.83.17.6337. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee W. H., Wheatley W., Benedict W. F., Huang C. M., Lee E. Y. Purification, biochemical characterization, and biological function of human esterase D. Proc Natl Acad Sci U S A. 1986 Sep;83(18):6790–6794. doi: 10.1073/pnas.83.18.6790. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Markwell M. A., Haas S. M., Bieber L. L., Tolbert N. E. A modification of the Lowry procedure to simplify protein determination in membrane and lipoprotein samples. Anal Biochem. 1978 Jun 15;87(1):206–210. doi: 10.1016/0003-2697(78)90586-9. [DOI] [PubMed] [Google Scholar]
- Maurizi M. R., Clark W. P., Kim S. H., Gottesman S. Clp P represents a unique family of serine proteases. J Biol Chem. 1990 Jul 25;265(21):12546–12552. [PubMed] [Google Scholar]
- Nakazono M., Hirai A. Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice. Mol Gen Genet. 1993 Jan;236(2-3):341–346. doi: 10.1007/BF00277131. [DOI] [PubMed] [Google Scholar]
- Neben I., Sahm H., Kula M. R. Studies on an enzyme, S-formylglutathione hydrolase, of the dissimilatory pathway of methanol in Candida boidinii. Biochim Biophys Acta. 1980 Jul 10;614(1):81–91. doi: 10.1016/0005-2744(80)90169-2. [DOI] [PubMed] [Google Scholar]
- Ras J., Van Ophem P. W., Reijnders W. N., Van Spanning R. J., Duine J. A., Stouthamer A. H., Harms N. Isolation, sequencing, and mutagenesis of the gene encoding NAD- and glutathione-dependent formaldehyde dehydrogenase (GD-FALDH) from Paracoccus denitrificans, in which GD-FALDH is essential for methylotrophic growth. J Bacteriol. 1995 Jan;177(1):247–251. doi: 10.1128/jb.177.1.247-251.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sakai Y., Murdanoto A. P., Sembiring L., Tani Y., Kato N. A novel formaldehyde oxidation pathway in methylotrophic yeasts: methylformate as a possible intermediate. FEMS Microbiol Lett. 1995 Apr 1;127(3):229–234. doi: 10.1111/j.1574-6968.1995.tb07478.x. [DOI] [PubMed] [Google Scholar]
- Sanger F., Coulson A. R., Barrell B. G., Smith A. J., Roe B. A. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol. 1980 Oct 25;143(2):161–178. doi: 10.1016/0022-2836(80)90196-5. [DOI] [PubMed] [Google Scholar]
- Speer B. S., Chistoserdova L., Lidstrom M. E. Sequence of the gene for a NAD(P)-dependent formaldehyde dehydrogenase (class III alcohol dehydrogenase) from a marine methanotroph Methylobacter marinus A45. FEMS Microbiol Lett. 1994 Sep 1;121(3):349–355. doi: 10.1111/j.1574-6968.1994.tb07125.x. [DOI] [PubMed] [Google Scholar]
- Uotila L., Koivusalo M. Purification and properties of S-formylglutathione hydrolase from human liver. J Biol Chem. 1974 Dec 10;249(23):7664–7672. [PubMed] [Google Scholar]
- Van Spanning R. J., Wansell C., Harms N., Oltmann L. F., Stouthamer A. H. Mutagenesis of the gene encoding cytochrome c550 of Paracoccus denitrificans and analysis of the resultant physiological effects. J Bacteriol. 1990 Feb;172(2):986–996. doi: 10.1128/jb.172.2.986-996.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vieira J., Messing J. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene. 1982 Oct;19(3):259–268. doi: 10.1016/0378-1119(82)90015-4. [DOI] [PubMed] [Google Scholar]
- Yanase H., Noda H., Aoki K., Kita K., Kato N. Cloning, sequence analysis, and expression of the gene encoding formaldehyde dismutase from Pseudomonas putida F61. Biosci Biotechnol Biochem. 1995 Feb;59(2):197–202. doi: 10.1271/bbb.59.197. [DOI] [PubMed] [Google Scholar]
- de Vries G. E., Harms N., Maurer K., Papendrecht A., Stouthamer A. H. Physiological regulation of Paracoccus denitrificans methanol dehydrogenase synthesis and activity. J Bacteriol. 1988 Aug;170(8):3731–3737. doi: 10.1128/jb.170.8.3731-3737.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]