Abstract
The anaerobic degradation of 4-hydroxybenzoate is initiated by the formation of 4-hydroxybenzoyl coenzyme A, with the next step proposed to be a dehydroxylation to benzoyl coenzyme A, the starting compound for a central pathway of aromatic compound ring reduction and cleavage. Three open reading frames, divergently transcribed from the 4-hydroxybenzoate coenzyme A ligase gene, hbaA, were identified and sequenced from the phototrophic bacterium Rhodopseudomonas palustris. These genes, named hbaBCD, specify polypeptides of 17.5, 82.6, and 34.5 kDa, respectively. The deduced amino acid sequences show considerable similarities to a group of hydroxylating enzymes involved in CO, xanthine, and nicotine metabolism that have conserved binding sites for [2Fe-2S] clusters and a molybdenum cofactor. Cassette disruption of the hbaB gene yielded a mutant that was unable to grow anaerobically on 4-hydroxybenzoate but grew normally on benzoate. The hbaB mutant cells did not accumulate [14C]benzoyl coenzyme A during short-term uptake of [14C]4-hydroxybenzoate, but benzoyl coenzyme A was the major radioactive metabolite formed by the wild type. In addition, crude extracts of the mutant failed to convert 4-hydroxybenzoyl coenzyme A to benzoyl coenzyme A. This evidence indicates that the hbaBCD genes encode the subunits of a 4-hydroxybenzoyl coenzyme A reductase (dehydroxylating). The sizes of the specified polypeptides are similar to those reported for 4-hydroxybenzoyl coenzyme A reductase isolated from the denitrifying bacterium Thauera aromatica. The amino acid consensus sequence for a molybdenum cofactor binding site is in HbaC. This cofactor appears to be an essential component because anaerobic growth of R. palustris on 4-hydroxybenzoate, but not on benzoate, was retarded unless 0.1 microM molybdate was added to the medium. Neither tungstate nor vanadate replaced molybdate, and tungstate competitively inhibited growth stimulation by molybdate.
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- Amaya Y., Yamazaki K., Sato M., Noda K., Nishino T., Nishino T. Proteolytic conversion of xanthine dehydrogenase from the NAD-dependent type to the O2-dependent type. Amino acid sequence of rat liver xanthine dehydrogenase and identification of the cleavage sites of the enzyme protein during irreversible conversion by trypsin. J Biol Chem. 1990 Aug 25;265(24):14170–14175. [PubMed] [Google Scholar]
- Biegert T., Altenschmidt U., Eckerskorn C., Fuchs G. Enzymes of anaerobic metabolism of phenolic compounds. 4-Hydroxybenzoate-CoA ligase from a denitrifying Pseudomonas species. Eur J Biochem. 1993 Apr 1;213(1):555–561. doi: 10.1111/j.1432-1033.1993.tb17794.x. [DOI] [PubMed] [Google Scholar]
- Bonting C. F., Fuchs G. Anaerobic metabolism of 2-hydroxybenzoic acid (salicylic acid) by a denitrifying bacterium. Arch Microbiol. 1996 Jun;165(6):402–408. doi: 10.1007/s002030050344. [DOI] [PubMed] [Google Scholar]
- Brackmann R., Fuchs G. Enzymes of anaerobic metabolism of phenolic compounds. 4-Hydroxybenzoyl-CoA reductase (dehydroxylating) from a denitrifying Pseudomonas species. Eur J Biochem. 1993 Apr 1;213(1):563–571. doi: 10.1111/j.1432-1033.1993.tb17795.x. [DOI] [PubMed] [Google Scholar]
- Dispensa M., Thomas C. T., Kim M. K., Perrotta J. A., Gibson J., Harwood C. S. Anaerobic growth of Rhodopseudomonas palustris on 4-hydroxybenzoate is dependent on AadR, a member of the cyclic AMP receptor protein family of transcriptional regulators. J Bacteriol. 1992 Sep;174(18):5803–5813. doi: 10.1128/jb.174.18.5803-5813.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Egland P. G., Gibson J., Harwood C. S. Benzoate-coenzyme A ligase, encoded by badA, is one of three ligases able to catalyze benzoyl-coenzyme A formation during anaerobic growth of Rhodopseudomonas palustris on benzoate. J Bacteriol. 1995 Nov;177(22):6545–6551. doi: 10.1128/jb.177.22.6545-6551.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Elder D. J., Kelly D. J. The bacterial degradation of benzoic acid and benzenoid compounds under anaerobic conditions: unifying trends and new perspectives. FEMS Microbiol Rev. 1994 Apr;13(4):441–468. doi: 10.1111/j.1574-6976.1994.tb00061.x. [DOI] [PubMed] [Google Scholar]
- Gibson J., Dispensa M., Fogg G. C., Evans D. T., Harwood C. S. 4-Hydroxybenzoate-coenzyme A ligase from Rhodopseudomonas palustris: purification, gene sequence, and role in anaerobic degradation. J Bacteriol. 1994 Feb;176(3):634–641. doi: 10.1128/jb.176.3.634-641.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Glatigny A., Scazzocchio C. Cloning and molecular characterization of hxA, the gene coding for the xanthine dehydrogenase (purine hydroxylase I) of Aspergillus nidulans. J Biol Chem. 1995 Feb 24;270(8):3534–3550. doi: 10.1074/jbc.270.8.3534. [DOI] [PubMed] [Google Scholar]
- Gorny N., Schink B. Anaerobic degradation of catechol by Desulfobacterium sp. strain Cat2 proceeds via carboxylation to protocatechuate. Appl Environ Microbiol. 1994 Sep;60(9):3396–3400. doi: 10.1128/aem.60.9.3396-3400.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grether-Beck S., Igloi G. L., Pust S., Schilz E., Decker K., Brandsch R. Structural analysis and molybdenum-dependent expression of the pAO1-encoded nicotine dehydrogenase genes of Arthrobacter nicotinovorans. Mol Microbiol. 1994 Sep;13(5):929–936. doi: 10.1111/j.1365-2958.1994.tb00484.x. [DOI] [PubMed] [Google Scholar]
- Harayama S., Polissi A., Rekik M. Divergent evolution of chloroplast-type ferredoxins. FEBS Lett. 1991 Jul 8;285(1):85–88. doi: 10.1016/0014-5793(91)80730-q. [DOI] [PubMed] [Google Scholar]
- Harwood C. S., Gibson J. Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Appl Environ Microbiol. 1988 Mar;54(3):712–717. doi: 10.1128/aem.54.3.712-717.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hille R., Nishino T. Flavoprotein structure and mechanism. 4. Xanthine oxidase and xanthine dehydrogenase. FASEB J. 1995 Aug;9(11):995–1003. [PubMed] [Google Scholar]
- Hughes R. K., Doyle W. A., Chovnick A., Whittle J. R., Burke J. F., Bray R. C. Use of rosy mutant strains of Drosophila melanogaster to probe the structure and function of xanthine dehydrogenase. Biochem J. 1992 Jul 15;285(Pt 2):507–513. doi: 10.1042/bj2850507. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Keen N. T., Tamaki S., Kobayashi D., Trollinger D. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene. 1988 Oct 15;70(1):191–197. doi: 10.1016/0378-1119(88)90117-5. [DOI] [PubMed] [Google Scholar]
- Keith T. P., Riley M. A., Kreitman M., Lewontin R. C., Curtis D., Chambers G. Sequence of the structural gene for xanthine dehydrogenase (rosy locus) in Drosophila melanogaster. Genetics. 1987 May;116(1):67–73. doi: 10.1093/genetics/116.1.67. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kretzer A., Frunzke K., Andreesen J. R. Catabolism of isonicotinate by Mycobacterium sp. INA1: extended description of the pathway and purification of the molybdoenzyme isonicotinate dehydrogenase. J Gen Microbiol. 1993 Nov;139(11):2763–2772. doi: 10.1099/00221287-139-11-2763. [DOI] [PubMed] [Google Scholar]
- Lack A., Fuchs G. Carboxylation of phenylphosphate by phenol carboxylase, an enzyme system of anaerobic phenol metabolism. J Bacteriol. 1992 Jun;174(11):3629–3636. doi: 10.1128/jb.174.11.3629-3636.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Merkel S. M., Eberhard A. E., Gibson J., Harwood C. S. Involvement of coenzyme A thioesters in anaerobic metabolism of 4-hydroxybenzoate by Rhodopseudomonas palustris. J Bacteriol. 1989 Jan;171(1):1–7. doi: 10.1128/jb.171.1.1-7.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Möller W., Amons R. Phosphate-binding sequences in nucleotide-binding proteins. FEBS Lett. 1985 Jul 1;186(1):1–7. doi: 10.1016/0014-5793(85)81326-0. [DOI] [PubMed] [Google Scholar]
- Ornston L. N., Stanier R. Y. The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. J Biol Chem. 1966 Aug 25;241(16):3776–3786. [PubMed] [Google Scholar]
- Parales R. E., Harwood C. S. Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida. J Bacteriol. 1993 Sep;175(18):5829–5838. doi: 10.1128/jb.175.18.5829-5838.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Perrotta J. A., Harwood C. S. Anaerobic Metabolism of Cyclohex-1-Ene-1-Carboxylate, a Proposed Intermediate of Benzoate Degradation, by Rhodopseudomonas palustris. Appl Environ Microbiol. 1994 Jun;60(6):1775–1782. doi: 10.1128/aem.60.6.1775-1782.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Quandt J., Hynes M. F. Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene. 1993 May 15;127(1):15–21. doi: 10.1016/0378-1119(93)90611-6. [DOI] [PubMed] [Google Scholar]
- Reichenbecher W., Brune A., Schink B. Transhydroxylase of Pelobacter acidigallici: a molybdoenzyme catalyzing the conversion of pyrogallol to phloroglucinol. Biochim Biophys Acta. 1994 Feb 16;1204(2):217–224. doi: 10.1016/0167-4838(94)90011-6. [DOI] [PubMed] [Google Scholar]
- Reichenbecher W., Rüdiger A., Kroneck P. M., Schink B. One molecule of molybdopterin guanine dinucleotide is associated with each subunit of the heterodimeric Mo-Fe-S protein transhydroxylase of Pelobacter acidigallici as determined by SDS/PAGE and mass spectrometry. Eur J Biochem. 1996 Apr 15;237(2):406–413. doi: 10.1111/j.1432-1033.1996.0406k.x. [DOI] [PubMed] [Google Scholar]
- Schübel U., Kraut M., Mörsdorf G., Meyer O. Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans. J Bacteriol. 1995 Apr;177(8):2197–2203. doi: 10.1128/jb.177.8.2197-2203.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stewart V. Nitrate respiration in relation to facultative metabolism in enterobacteria. Microbiol Rev. 1988 Jun;52(2):190–232. doi: 10.1128/mr.52.2.190-232.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Studier F. W., Moffatt B. A. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol. 1986 May 5;189(1):113–130. doi: 10.1016/0022-2836(86)90385-2. [DOI] [PubMed] [Google Scholar]
- Tabor S., Richardson C. C. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci U S A. 1985 Feb;82(4):1074–1078. doi: 10.1073/pnas.82.4.1074. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Werth M. T., Cecchini G., Manodori A., Ackrell B. A., Schröder I., Gunsalus R. P., Johnson M. K. Site-directed mutagenesis of conserved cysteine residues in Escherichia coli fumarate reductase: modification of the spectroscopic and electrochemical properties of the [2Fe-2S] cluster. Proc Natl Acad Sci U S A. 1990 Nov;87(22):8965–8969. doi: 10.1073/pnas.87.22.8965. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wootton J. C., Nicolson R. E., Cock J. M., Walters D. E., Burke J. F., Doyle W. A., Bray R. C. Enzymes depending on the pterin molybdenum cofactor: sequence families, spectroscopic properties of molybdenum and possible cofactor-binding domains. Biochim Biophys Acta. 1991 Mar 29;1057(2):157–185. doi: 10.1016/s0005-2728(05)80100-8. [DOI] [PubMed] [Google Scholar]
- Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
- de Lorenzo V., Cases I., Herrero M., Timmis K. N. Early and late responses of TOL promoters to pathway inducers: identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters. J Bacteriol. 1993 Nov;175(21):6902–6907. doi: 10.1128/jb.175.21.6902-6907.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- el Kasmi A., Brachmann R., Fuchs G., Ragsdale S. W. Hydroxybenzoyl-CoA reductase: coupling kinetics and electrochemistry to derive enzyme mechanisms. Biochemistry. 1995 Sep 19;34(37):11668–11677. doi: 10.1021/bi00037a004. [DOI] [PubMed] [Google Scholar]