Abstract
To investigate the physiological role of the essential histone-like protein of Bacillus subtilis (HBsu) in the nucleoid structure, a fusion to the green fluorescent protein (GFP) of Aequorea victoria was constructed. This purified fusion protein, HBsuGFP, showed a threefold-reduced affinity to DNA compared to unmodified HBsu; however, in gel mobility shift experiments HBsuGFP DNA-binding was greatly enhanced in the presence of low HBsu concentrations. Additional production of HBsu also had a positive effect on the retarded growth of a B. subtilis strain, PK9C8, which expresses only hbs-gfp (encoding HBsuGFP). HBsu seemed to influence not only growth but also nucleoid structure, as monitored by DNA staining and fluorescence microscopy. Without HBsu production, strain PK9C8 showed a relaxed nucleoid structure associated with HBsuGFP. However, a highly compact nucleoid structure that coincides with the fluorescence of the fusion protein was visualized when HBsu synthesis was induced. This provides the first evidence for in vivo association of HBsu in DNA packaging and its consequence on cell growth.
Full Text
The Full Text of this article is available as a PDF (302.5 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Alonso J. C., Gutierrez C., Rojo F. The role of chromatin-associated protein Hbsu in beta-mediated DNA recombination is to facilitate the joining of distant recombination sites. Mol Microbiol. 1995 Nov;18(3):471–478. doi: 10.1111/j.1365-2958.1995.mmi_18030471.x. [DOI] [PubMed] [Google Scholar]
- Arnold-Schulz-Gahmen B., Salti-Montesanto V., Nguyen J., Hirschbein L., Le Hégarat F. The Bacillus subtilis nucleoid-associated protein HPB12 strongly compacts DNA. J Bacteriol. 1994 Jan;176(1):50–60. doi: 10.1128/jb.176.1.50-60.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Barák I., Behari J., Olmedo G., Guzmán P., Brown D. P., Castro E., Walker D., Westpheling J., Youngman P. Structure and function of the Bacillus SpoIIE protein and its localization to sites of sporulation septum assembly. Mol Microbiol. 1996 Mar;19(5):1047–1060. doi: 10.1046/j.1365-2958.1996.433963.x. [DOI] [PubMed] [Google Scholar]
- Bohrmann B., Villiger W., Johansen R., Kellenberger E. Coralline shape of the bacterial nucleoid after cryofixation. J Bacteriol. 1991 May;173(10):3149–3158. doi: 10.1128/jb.173.10.3149-3158.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
- Burnette W. N. "Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate--polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal Biochem. 1981 Apr;112(2):195–203. doi: 10.1016/0003-2697(81)90281-5. [DOI] [PubMed] [Google Scholar]
- Chalfie M., Tu Y., Euskirchen G., Ward W. W., Prasher D. C. Green fluorescent protein as a marker for gene expression. Science. 1994 Feb 11;263(5148):802–805. doi: 10.1126/science.8303295. [DOI] [PubMed] [Google Scholar]
- Drlica K., Rouviere-Yaniv J. Histonelike proteins of bacteria. Microbiol Rev. 1987 Sep;51(3):301–319. doi: 10.1128/mr.51.3.301-319.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dürrenberger M., Bjornsti M. A., Uetz T., Hobot J. A., Kellenberger E. Intracellular location of the histonelike protein HU in Escherichia coli. J Bacteriol. 1988 Oct;170(10):4757–4768. doi: 10.1128/jb.170.10.4757-4768.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dürrenberger M., La Teana A., Citro G., Venanzi F., Gualerzi C. O., Pon C. L. Escherichia coli DNA-binding protein H-NS is localized in the nucleoid. Res Microbiol. 1991 May;142(4):373–380. doi: 10.1016/0923-2508(91)90106-k. [DOI] [PubMed] [Google Scholar]
- Falconi M., Gualtieri M. T., La Teana A., Losso M. A., Pon C. L. Proteins from the prokaryotic nucleoid: primary and quaternary structure of the 15-kD Escherichia coli DNA binding protein H-NS. Mol Microbiol. 1988 May;2(3):323–329. doi: 10.1111/j.1365-2958.1988.tb00035.x. [DOI] [PubMed] [Google Scholar]
- Flamm E. L., Weisberg R. A. Primary structure of the hip gene of Escherichia coli and of its product, the beta subunit of integration host factor. J Mol Biol. 1985 May 25;183(2):117–128. doi: 10.1016/0022-2836(85)90206-2. [DOI] [PubMed] [Google Scholar]
- Groch N., Schindelin H., Scholtz A. S., Hahn U., Heinemann U. Determination of DNA-binding parameters for the Bacillus subtilis histone-like HBsu protein through introduction of fluorophores by site-directed mutagenesis of a synthetic gene. Eur J Biochem. 1992 Jul 15;207(2):677–685. doi: 10.1111/j.1432-1033.1992.tb17095.x. [DOI] [PubMed] [Google Scholar]
- Göransson M., Sondén B., Nilsson P., Dagberg B., Forsman K., Emanuelsson K., Uhlin B. E. Transcriptional silencing and thermoregulation of gene expression in Escherichia coli. Nature. 1990 Apr 12;344(6267):682–685. doi: 10.1038/344682a0. [DOI] [PubMed] [Google Scholar]
- Henner D. J. Inducible expression of regulatory genes in Bacillus subtilis. Methods Enzymol. 1990;185:223–228. doi: 10.1016/0076-6879(90)85022-g. [DOI] [PubMed] [Google Scholar]
- Huisman O., Faelen M., Girard D., Jaffé A., Toussaint A., Rouvière-Yaniv J. Multiple defects in Escherichia coli mutants lacking HU protein. J Bacteriol. 1989 Jul;171(7):3704–3712. doi: 10.1128/jb.171.7.3704-3712.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kano Y., Imamoto F. Requirement of integration host factor (IHF) for growth of Escherichia coli deficient in HU protein. Gene. 1990 Apr 30;89(1):133–137. doi: 10.1016/0378-1119(90)90216-e. [DOI] [PubMed] [Google Scholar]
- Kano Y., Osato K., Wada M., Imamoto F. Cloning and sequencing of the HU-2 gene of Escherichia coli. Mol Gen Genet. 1987 Sep;209(2):408–410. doi: 10.1007/BF00329674. [DOI] [PubMed] [Google Scholar]
- Kano Y., Yoshino S., Wada M., Yokoyama K., Nobuhara M., Imamoto F. Molecular cloning and nucleotide sequence of the HU-1 gene of Escherichia coli. Mol Gen Genet. 1985;201(2):360–362. doi: 10.1007/BF00425687. [DOI] [PubMed] [Google Scholar]
- Klein C., Kaletta C., Schnell N., Entian K. D. Analysis of genes involved in biosynthesis of the lantibiotic subtilin. Appl Environ Microbiol. 1992 Jan;58(1):132–142. doi: 10.1128/aem.58.1.132-142.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Le Hégarat F., Salti-Montesanto V., Hauck Y., Hirschbein L. Purification and characterization of the HU-like protein HPB9 from the Bacillus subtilis nucleoid. Biochim Biophys Acta. 1993 Feb 20;1172(1-2):101–107. doi: 10.1016/0167-4781(93)90275-i. [DOI] [PubMed] [Google Scholar]
- Lewis P. J., Errington J. Use of green fluorescent protein for detection of cell-specific gene expression and subcellular protein localization during sporulation in Bacillus subtilis. Microbiology. 1996 Apr;142(Pt 4):733–740. doi: 10.1099/00221287-142-4-733. [DOI] [PubMed] [Google Scholar]
- May G., Dersch P., Haardt M., Middendorf A., Bremer E. The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid. Mol Gen Genet. 1990 Oct;224(1):81–90. doi: 10.1007/BF00259454. [DOI] [PubMed] [Google Scholar]
- McGovern V., Higgins N. P., Chiz R. S., Jaworski A. H-NS over-expression induces an artificial stationary phase by silencing global transcription. Biochimie. 1994;76(10-11):1019–1029. doi: 10.1016/0300-9084(94)90026-4. [DOI] [PubMed] [Google Scholar]
- Mechulam Y., Fayat G., Blanquet S. Sequence of the Escherichia coli pheST operon and identification of the himA gene. J Bacteriol. 1985 Aug;163(2):787–791. doi: 10.1128/jb.163.2.787-791.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Micka B., Groch N., Heinemann U., Marahiel M. A. Molecular cloning, nucleotide sequence, and characterization of the Bacillus subtilis gene encoding the DNA-binding protein HBsu. J Bacteriol. 1991 May;173(10):3191–3198. doi: 10.1128/jb.173.10.3191-3198.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Micka B., Marahiel M. A. The DNA-binding protein HBsu is essential for normal growth and development in Bacillus subtilis. Biochimie. 1992 Jul-Aug;74(7-8):641–650. doi: 10.1016/0300-9084(92)90136-3. [DOI] [PubMed] [Google Scholar]
- Rouvière-Yaniv J. Localization of the HU protein on the Escherichia coli nucleoid. Cold Spring Harb Symp Quant Biol. 1978;42(Pt 1):439–447. doi: 10.1101/sqb.1978.042.01.047. [DOI] [PubMed] [Google Scholar]
- Salti V., Le Hégarat F., Hirschbein L. Isolation and characterization of small heat-stable acid-soluble DNA-binding proteins from Bacillus subtilis nucleoids. J Gen Microbiol. 1985 Mar;131(3):581–590. doi: 10.1099/00221287-131-3-581. [DOI] [PubMed] [Google Scholar]
- Schmid M. B. More than just "histone-like" proteins. Cell. 1990 Nov 2;63(3):451–453. doi: 10.1016/0092-8674(90)90438-k. [DOI] [PubMed] [Google Scholar]
- Schägger H., von Jagow G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem. 1987 Nov 1;166(2):368–379. doi: 10.1016/0003-2697(87)90587-2. [DOI] [PubMed] [Google Scholar]
- Shellman V. L., Pettijohn D. E. Introduction of proteins into living bacterial cells: distribution of labeled HU protein in Escherichia coli. J Bacteriol. 1991 May;173(10):3047–3059. doi: 10.1128/jb.173.10.3047-3059.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Spurio R., Dürrenberger M., Falconi M., La Teana A., Pon C. L., Gualerzi C. O. Lethal overproduction of the Escherichia coli nucleoid protein H-NS: ultramicroscopic and molecular autopsy. Mol Gen Genet. 1992 Jan;231(2):201–211. doi: 10.1007/BF00279792. [DOI] [PubMed] [Google Scholar]
- Ussery D. W., Hinton J. C., Jordi B. J., Granum P. E., Seirafi A., Stephen R. J., Tupper A. E., Berridge G., Sidebotham J. M., Higgins C. F. The chromatin-associated protein H-NS. Biochimie. 1994;76(10-11):968–980. doi: 10.1016/0300-9084(94)90022-1. [DOI] [PubMed] [Google Scholar]
- Wada M., Kano Y., Ogawa T., Okazaki T., Imamoto F. Construction and characterization of the deletion mutant of hupA and hupB genes in Escherichia coli. J Mol Biol. 1988 Dec 5;204(3):581–591. doi: 10.1016/0022-2836(88)90357-9. [DOI] [PubMed] [Google Scholar]
- Webb C. D., Decatur A., Teleman A., Losick R. Use of green fluorescent protein for visualization of cell-specific gene expression and subcellular protein localization during sporulation in Bacillus subtilis. J Bacteriol. 1995 Oct;177(20):5906–5911. doi: 10.1128/jb.177.20.5906-5911.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yasuzawa K., Hayashi N., Goshima N., Kohno K., Imamoto F., Kano Y. Histone-like proteins are required for cell growth and constraint of supercoils in DNA. Gene. 1992 Dec 1;122(1):9–15. doi: 10.1016/0378-1119(92)90026-l. [DOI] [PubMed] [Google Scholar]