Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1997 Apr;179(7):2339–2347. doi: 10.1128/jb.179.7.2339-2347.1997

The kilE locus of promiscuous IncP alpha plasmid RK2 is required for stable maintenance in Pseudomonas aeruginosa.

J W Wilson 1, E A Sia 1, D H Figurski 1
PMCID: PMC178972  PMID: 9079921

Abstract

Eight coordinately regulated operons constitute the kor regulon of the IncP alpha plasmid RK2. Three operons specify functions required for replication initiation, conjugative transfer, and control of gene expression. The functions of the other operons, including those of the four coregulated operons that compose the kilA, kilC, and kilE loci, have not been determined. Here, we present the first evidence that a kil determinant is involved in IncP plasmid maintenance. Elevation of KorC levels specifically to reduce the expression of the KorC-regulated kilC and kilE operons severely affected the maintenance of both the IncP alpha plasmid RK2lac and the IncP beta plasmid R751 in Pseudomonas aeruginosa but had little effect on plasmid maintenance in Escherichia coli. Precise deletion of the two kilE operons from RK2lac was achieved with the VEX mutagenesis system for large genomes. The resulting plasmid showed significant loss of stability in P. aeruginosa only. The defect could be complemented by reintroduction of kilE at a different position on the plasmid. The instability of the RK2lac delta kilE mutant did not result from a reduction in average plasmid copy number, reduced expression of kilC, decreased conjugative transfer, or loss of the korE regulator. We found that both the par and kilE loci are required for full stability of RK2lac in P. aeruginosa and that the par and kilE functions act independently. These results demonstrate a critical role for the kilE locus in the stable inheritance of RK2 in P. aeruginosa.

Full Text

The Full Text of this article is available as a PDF (367.4 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Amann E., Brosius J., Ptashne M. Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli. Gene. 1983 Nov;25(2-3):167–178. doi: 10.1016/0378-1119(83)90222-6. [DOI] [PubMed] [Google Scholar]
  2. Austin S., Nordström K. Partition-mediated incompatibility of bacterial plasmids. Cell. 1990 Feb 9;60(3):351–354. doi: 10.1016/0092-8674(90)90584-2. [DOI] [PubMed] [Google Scholar]
  3. Ayres E. K., Thomson V. J., Merino G., Balderes D., Figurski D. H. Precise deletions in large bacterial genomes by vector-mediated excision (VEX). The trfA gene of promiscuous plasmid RK2 is essential for replication in several gram-negative hosts. J Mol Biol. 1993 Mar 5;230(1):174–185. doi: 10.1006/jmbi.1993.1134. [DOI] [PubMed] [Google Scholar]
  4. Bagdasarian M., Lurz R., Rückert B., Franklin F. C., Bagdasarian M. M., Frey J., Timmis K. N. Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene. 1981 Dec;16(1-3):237–247. doi: 10.1016/0378-1119(81)90080-9. [DOI] [PubMed] [Google Scholar]
  5. Balzer D., Ziegelin G., Pansegrau W., Kruft V., Lanka E. KorB protein of promiscuous plasmid RP4 recognizes inverted sequence repetitions in regions essential for conjugative plasmid transfer. Nucleic Acids Res. 1992 Apr 25;20(8):1851–1858. doi: 10.1093/nar/20.8.1851. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Coetzee J. N., Lecatsas G., Coetzee W. F., Hedges R. W. Properties of R plasmid R772 and the corresponding pilus-specific phage PR772. J Gen Microbiol. 1979 Feb;110(2):263–273. doi: 10.1099/00221287-110-2-263. [DOI] [PubMed] [Google Scholar]
  7. Cohen S. N., Chang A. C., Hsu L. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA. Proc Natl Acad Sci U S A. 1972 Aug;69(8):2110–2114. doi: 10.1073/pnas.69.8.2110. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Datta N., Hedges R. W. Host ranges of R factors. J Gen Microbiol. 1972 May;70(3):453–460. doi: 10.1099/00221287-70-3-453. [DOI] [PubMed] [Google Scholar]
  9. Durland R. H., Helinski D. R. Replication of the broad-host-range plasmid RK2: direct measurement of intracellular concentrations of the essential TrfA replication proteins and their effect on plasmid copy number. J Bacteriol. 1990 Jul;172(7):3849–3858. doi: 10.1128/jb.172.7.3849-3858.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Eberl L., Kristensen C. S., Givskov M., Grohmann E., Gerlitz M., Schwab H. Analysis of the multimer resolution system encoded by the parCBA operon of broad-host-range plasmid RP4. Mol Microbiol. 1994 Apr;12(1):131–141. doi: 10.1111/j.1365-2958.1994.tb01002.x. [DOI] [PubMed] [Google Scholar]
  11. Figurski D. H., Helinski D. R. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1648–1652. doi: 10.1073/pnas.76.4.1648. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Figurski D. H., Pohlman R. F., Bechhofer D. H., Prince A. S., Kelton C. A. Broad host range plasmid RK2 encodes multiple kil genes potentially lethal to Escherichia coli host cells. Proc Natl Acad Sci U S A. 1982 Mar;79(6):1935–1939. doi: 10.1073/pnas.79.6.1935. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Figurski D. H., Young C., Schreiner H. C., Pohlman R. F., Bechhofer D. H., Prince A. S., D'Amico T. F. Genetic interactions of broad host-range plasmid RK2: evidence for a complex replication regulon. Basic Life Sci. 1985;30:227–241. doi: 10.1007/978-1-4613-2447-8_19. [DOI] [PubMed] [Google Scholar]
  14. Fong S. T., Stanisich V. A. Location and characterization of two functions on RP1 that inhibit the fertility of the IncW plasmid R388. J Gen Microbiol. 1989 Mar;135(3):499–502. doi: 10.1099/00221287-135-3-499. [DOI] [PubMed] [Google Scholar]
  15. Fürste J. P., Pansegrau W., Frank R., Blöcker H., Scholz P., Bagdasarian M., Lanka E. Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector. Gene. 1986;48(1):119–131. doi: 10.1016/0378-1119(86)90358-6. [DOI] [PubMed] [Google Scholar]
  16. Gerlitz M., Hrabak O., Schwab H. Partitioning of broad-host-range plasmid RP4 is a complex system involving site-specific recombination. J Bacteriol. 1990 Nov;172(11):6194–6203. doi: 10.1128/jb.172.11.6194-6203.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Goncharoff P., Saadi S., Chang C. H., Saltman L. H., Figurski D. H. Structural, molecular, and genetic analysis of the kilA operon of broad-host-range plasmid RK2. J Bacteriol. 1991 Jun;173(11):3463–3477. doi: 10.1128/jb.173.11.3463-3477.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Grinter N. J., Brewster G., Barth P. T. Two mechanisms necessary for the stable inheritance of plasmid RP4. Plasmid. 1989 Nov;22(3):203–214. doi: 10.1016/0147-619x(89)90003-6. [DOI] [PubMed] [Google Scholar]
  19. Hayman G. T., Bolen P. L. Movement of shuttle plasmids from Escherichia coli into yeasts other than Saccharomyces cerevisiae using trans-kingdom conjugation. Plasmid. 1993 Nov;30(3):251–257. doi: 10.1006/plas.1993.1056. [DOI] [PubMed] [Google Scholar]
  20. Heinemann J. A., Sprague G. F., Jr Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast. Nature. 1989 Jul 20;340(6230):205–209. doi: 10.1038/340205a0. [DOI] [PubMed] [Google Scholar]
  21. Hiraga S. Chromosome and plasmid partition in Escherichia coli. Annu Rev Biochem. 1992;61:283–306. doi: 10.1146/annurev.bi.61.070192.001435. [DOI] [PubMed] [Google Scholar]
  22. Ingram L. C., Richmond M. H., Sykes R. B. Molecular characterization of the R factors implicated in the carbenicillin resistance of a sequence of Pseudomonas aeruginosa strains isolated from burns. Antimicrob Agents Chemother. 1973 Feb;3(2):279–288. doi: 10.1128/aac.3.2.279. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Jagura-Burdzy G., Khanim F., Smith C. A., Thomas C. M. Crosstalk between plasmid vegetative replication and conjugative transfer: repression of the trfA operon by trbA of broad host range plasmid RK2. Nucleic Acids Res. 1992 Aug 11;20(15):3939–3944. doi: 10.1093/nar/20.15.3939. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Jobanputra R. S., Datta N. Trimethoprim R factors in enterobacteria from clinical specimens. J Med Microbiol. 1974 May;7(2):169–177. doi: 10.1099/00222615-7-2-169. [DOI] [PubMed] [Google Scholar]
  25. Jovanovic O. S., Ayres E. K., Figurski D. H. Host-inhibitory functions encoded by promiscuous plasmids. Transient arrest of Escherichia coli segregants that fail to inherit plasmid RK2. J Mol Biol. 1994 Mar 18;237(1):52–64. doi: 10.1006/jmbi.1994.1208. [DOI] [PubMed] [Google Scholar]
  26. Kornacki J. A., Balderes P. J., Figurski D. H. Nucleotide sequence of korB, a replication control gene of broad host-range plasmid RK2. J Mol Biol. 1987 Nov 20;198(2):211–222. doi: 10.1016/0022-2836(87)90307-x. [DOI] [PubMed] [Google Scholar]
  27. Kornacki J. A., Burlage R. S., Figurski D. H. The kil-kor regulon of broad-host-range plasmid RK2: nucleotide sequence, polypeptide product, and expression of regulatory gene korC. J Bacteriol. 1990 Jun;172(6):3040–3050. doi: 10.1128/jb.172.6.3040-3050.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Kornacki J. A., Chang C. H., Figurski D. H. kil-kor regulon of promiscuous plasmid RK2: structure, products, and regulation of two operons that constitute the kilE locus. J Bacteriol. 1993 Aug;175(16):5078–5090. doi: 10.1128/jb.175.16.5078-5090.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Larsen M. H., Figurski D. H. Structure, expression, and regulation of the kilC operon of promiscuous IncP alpha plasmids. J Bacteriol. 1994 Aug;176(16):5022–5032. doi: 10.1128/jb.176.16.5022-5032.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
  31. Meyer R. J., Helinski D. R. Unidirectional replication of the P-group plasmid RK2. Biochim Biophys Acta. 1977 Sep 6;478(1):109–113. doi: 10.1016/0005-2787(77)90249-0. [DOI] [PubMed] [Google Scholar]
  32. Meyer R., Hinds M. Multiple mechanisms for expression of incompatibility by broad-host-range plasmid RK2. J Bacteriol. 1982 Dec;152(3):1078–1090. doi: 10.1128/jb.152.3.1078-1090.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Motallebi-Veshareh M., Balzer D., Lanka E., Jagura-Burdzy G., Thomas C. M. Conjugative transfer functions of broad-host-range plasmid RK2 are coregulated with vegetative replication. Mol Microbiol. 1992 Apr;6(7):907–920. doi: 10.1111/j.1365-2958.1992.tb01541.x. [DOI] [PubMed] [Google Scholar]
  34. Motallebi-Veshareh M., Rouch D. A., Thomas C. M. A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol. 1990 Sep;4(9):1455–1463. doi: 10.1111/j.1365-2958.1990.tb02056.x. [DOI] [PubMed] [Google Scholar]
  35. Pansegrau W., Lanka E., Barth P. T., Figurski D. H., Guiney D. G., Haas D., Helinski D. R., Schwab H., Stanisich V. A., Thomas C. M. Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis. J Mol Biol. 1994 Jun 24;239(5):623–663. doi: 10.1006/jmbi.1994.1404. [DOI] [PubMed] [Google Scholar]
  36. Prince A. S., Barlam T. Isolation of a DNA fragment containing replication functions from IncP2 megaplasmid pMG2. J Bacteriol. 1985 Feb;161(2):792–794. doi: 10.1128/jb.161.2.792-794.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Roberts R. C., Burioni R., Helinski D. R. Genetic characterization of the stabilizing functions of a region of broad-host-range plasmid RK2. J Bacteriol. 1990 Nov;172(11):6204–6216. doi: 10.1128/jb.172.11.6204-6216.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Roberts R. C., Ström A. R., Helinski D. R. The parDE operon of the broad-host-range plasmid RK2 specifies growth inhibition associated with plasmid loss. J Mol Biol. 1994 Mar 18;237(1):35–51. doi: 10.1006/jmbi.1994.1207. [DOI] [PubMed] [Google Scholar]
  39. Schmidhauser T. J., Bechhofer D. H., Figurski D. H., Helinski D. R. Host-specific effects of the korA-korB operon and oriT region on the maintenance of miniplasmid derivatives of broad host-range plasmid RK2. Plasmid. 1989 Mar;21(2):99–112. doi: 10.1016/0147-619x(89)90053-x. [DOI] [PubMed] [Google Scholar]
  40. Schmidhauser T. J., Filutowicz M., Helinski D. R. Replication of derivatives of the broad host range plasmid RK2 in two distantly related bacteria. Plasmid. 1983 May;9(3):325–330. doi: 10.1016/0147-619x(83)90010-0. [DOI] [PubMed] [Google Scholar]
  41. Schmidhauser T. J., Helinski D. R. Regions of broad-host-range plasmid RK2 involved in replication and stable maintenance in nine species of gram-negative bacteria. J Bacteriol. 1985 Oct;164(1):446–455. doi: 10.1128/jb.164.1.446-455.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Schreiner H. C., Bechhofer D. H., Pohlman R. F., Young C., Borden P. A., Figurski D. H. Replication control in promiscuous plasmid RK2: kil and kor functions affect expression of the essential replication gene trfA. J Bacteriol. 1985 Jul;163(1):228–237. doi: 10.1128/jb.163.1.228-237.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Sia E. A., Roberts R. C., Easter C., Helinski D. R., Figurski D. H. Different relative importances of the par operons and the effect of conjugal transfer on the maintenance of intact promiscuous plasmid RK2. J Bacteriol. 1995 May;177(10):2789–2797. doi: 10.1128/jb.177.10.2789-2797.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Smith C. A., Shingler V., Thomas C. M. The trfA and trfB promoter regions of broad host range plasmid RK2 share common potential regulatory sequences. Nucleic Acids Res. 1984 Apr 25;12(8):3619–3630. doi: 10.1093/nar/12.8.3619. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Smith C. A., Thomas C. M. Comparison of the organisation of the genomes of phenotypically diverse plasmids of incompatibility group P: members of the IncP beta sub-group are closely related. Mol Gen Genet. 1987 Mar;206(3):419–427. doi: 10.1007/BF00428881. [DOI] [PubMed] [Google Scholar]
  46. Smith C. A., Thomas C. M. Nucleotide sequence of the trfA gene of broad host-range plasmid RK2. J Mol Biol. 1984 May 25;175(3):251–262. doi: 10.1016/0022-2836(84)90347-4. [DOI] [PubMed] [Google Scholar]
  47. Stalker D. M., Thomas C. M., Helinski D. R. Nucleotide sequence of the region of the origin of replication of the broad host range plasmid RK2. Mol Gen Genet. 1981;181(1):8–12. doi: 10.1007/BF00338997. [DOI] [PubMed] [Google Scholar]
  48. Taylor D. E., Bradley D. E. Location on RP4 of a tellurite resistance determinant not normally expressed in IncP alpha plasmids. Antimicrob Agents Chemother. 1987 May;31(5):823–825. doi: 10.1128/aac.31.5.823. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Theophilus B. D., Thomas C. M. Nucleotide sequence of the transcriptional repressor gene korB which plays a key role in regulation of the copy number of broad host range plasmid RK2. Nucleic Acids Res. 1987 Sep 25;15(18):7443–7450. doi: 10.1093/nar/15.18.7443. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Thomas C. M., Ibbotson J. P., Wang N. Y., Smith C. A., Tipping R., Loader N. M. Gene regulation on broad host range plasmid RK2: identification of three novel operons whose transcription is repressed by both KorA and KorC. Nucleic Acids Res. 1988 Jun 24;16(12):5345–5359. doi: 10.1093/nar/16.12.5345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Thomas C. M., Smith C. A., Ibbotson J. P., Johnston L., Wang N. Evolution of the korA-oriV segment of promiscuous IncP plasmids. Microbiology. 1995 May;141(Pt 5):1201–1210. doi: 10.1099/13500872-141-5-1201. [DOI] [PubMed] [Google Scholar]
  52. Thomas C. M., Smith C. A. Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annu Rev Microbiol. 1987;41:77–101. doi: 10.1146/annurev.mi.41.100187.000453. [DOI] [PubMed] [Google Scholar]
  53. Thomas C. M., Smith C. A. The trfB region of broad host range plasmid RK2: the nucleotide sequence reveals incC and key regulatory gene trfB/korA/korD as overlapping genes. Nucleic Acids Res. 1986 Jun 11;14(11):4453–4469. doi: 10.1093/nar/14.11.4453. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Thomson V. J., Jovanovic O. S., Pohlman R. F., Chang C. H., Figurski D. H. Structure, function, and regulation of the kilB locus of promiscuous plasmid RK2. J Bacteriol. 1993 Apr;175(8):2423–2435. doi: 10.1128/jb.175.8.2423-2435.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  55. Walter E. G., Thomas C. M., Ibbotson J. P., Taylor D. E. Transcriptional analysis, translational analysis, and sequence of the kilA-tellurite resistance region of plasmid RK2Ter. J Bacteriol. 1991 Feb;173(3):1111–1119. doi: 10.1128/jb.173.3.1111-1119.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  56. Young C., Burlage R. S., Figurski D. H. Control of the kilA gene of the broad-host-range plasmid RK2: involvement of korA, korB, and a new gene, korE. J Bacteriol. 1987 Mar;169(3):1315–1320. doi: 10.1128/jb.169.3.1315-1320.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES