Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1997 May;179(9):2845–2851. doi: 10.1128/jb.179.9.2845-2851.1997

Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli.

M J Loessner 1, S K Maier 1, H Daubek-Puza 1, G Wendlinger 1, S Scherer 1
PMCID: PMC179044  PMID: 9139898

Abstract

The ply genes encoding the endolysin proteins from Bacillus cereus phages Bastille, TP21, and 12826 were identified, cloned, and sequenced. The endolysins could be overproduced in Escherichia coli (up to 20% of total cellular protein), and the recombinant proteins were purified by a two-step chromatographical procedure. All three enzymes induced rapid and specific lysis of viable cells of several Bacillus species, with highest activity on B. cereus and B. thuringiensis. Ply12 and Ply21 were experimentally shown to be N-acetylmuramoyl-L-alanine amidases (EC 3.5.1.28). No apparent holin genes were found adjacent to the ply genes. However, Ply21 may be endowed with a signal peptide which could play a role in timing of cell lysis by the cytoplasmic phage endolysin. The individual lytic enzymes (PlyBa, 41.1 kDa; Ply21, 29.5 kDa, Ply12, 27.7 kDa) show remarkable heterogeneity, i.e., their amino acid sequences reveal only little homology. The N-terminal part of Ply21 was found to be almost identical to the catalytic domains of a Bacillus sp. cell wall hydrolase (CwlSP) and an autolysin of B. subtilis (CwlA). The C terminus of PlyBa contains a 77-amino-acid sequence repeat which is also homologous to the binding domain of CwlSP. Ply12 shows homology to the major autolysins from B. subtilis and E. coli. Comparison with database sequences indicated a modular organization of the phage lysis proteins where the enzymatic activity is located in the N-terminal region and the C-termini are responsible for specific recognition and binding of Bacillus peptidoglycan. We speculate that the close relationship of the phage enzymes and cell wall autolysins is based upon horizontal gene transfer among different Bacillus phages and their hosts.

Full Text

The Full Text of this article is available as a PDF (551.6 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ackermann H. W., Azizbekyan R. R., Emadi Konjin H. P., Lecadet M. M., Seldin L., Yu M. X. New Bacillus bacteriophage species. Arch Virol. 1994;135(3-4):333–344. doi: 10.1007/BF01310018. [DOI] [PubMed] [Google Scholar]
  2. Ahmed R., Sankar-Mistry P., Jackson S., Ackermann H. W., Kasatiya S. S. Bacillus cereus phage typing as an epidemiological tool in outbreaks of food poisoning. J Clin Microbiol. 1995 Mar;33(3):636–640. doi: 10.1128/jcm.33.3.636-640.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Araki Y., Nakatani T., Nakayama K., Ito E. Occurrence of N-nonsubstituted glucosamine residues in peptidoglycan of lysozyme-resistant cell walls from Bacillus cereus. J Biol Chem. 1972 Oct 10;247(19):6312–6322. [PubMed] [Google Scholar]
  4. Carlson C. R., Caugant D. A., Kolstø A. B. Genotypic Diversity among Bacillus cereus and Bacillus thuringiensis Strains. Appl Environ Microbiol. 1994 Jun;60(6):1719–1725. doi: 10.1128/aem.60.6.1719-1725.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Haggård-Ljungquist E., Halling C., Calendar R. DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J Bacteriol. 1992 Mar;174(5):1462–1477. doi: 10.1128/jb.174.5.1462-1477.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Jarvis A. W., Collins L. J., Ackermann H. W. A study of five bacteriophages of the Myoviridae family which replicate on different gram-positive bacteria. Arch Virol. 1993;133(1-2):75–84. doi: 10.1007/BF01309745. [DOI] [PubMed] [Google Scholar]
  7. Joris B., Englebert S., Chu C. P., Kariyama R., Daneo-Moore L., Shockman G. D., Ghuysen J. M. Modular design of the Enterococcus hirae muramidase-2 and Streptococcus faecalis autolysin. FEMS Microbiol Lett. 1992 Mar 15;70(3):257–264. doi: 10.1016/0378-1097(92)90707-u. [DOI] [PubMed] [Google Scholar]
  8. Kuroda A., Sekiguchi J. Cloning, sequencing and genetic mapping of a Bacillus subtilis cell wall hydrolase gene. J Gen Microbiol. 1990 Nov;136(11):2209–2216. doi: 10.1099/00221287-136-11-2209. [DOI] [PubMed] [Google Scholar]
  9. Kuroda A., Sekiguchi J. Molecular cloning and sequencing of a major Bacillus subtilis autolysin gene. J Bacteriol. 1991 Nov;173(22):7304–7312. doi: 10.1128/jb.173.22.7304-7312.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Lazarevic V., Margot P., Soldo B., Karamata D. Sequencing and analysis of the Bacillus subtilis lytRABC divergon: a regulatory unit encompassing the structural genes of the N-acetylmuramoyl-L-alanine amidase and its modifier. J Gen Microbiol. 1992 Sep;138(9):1949–1961. doi: 10.1099/00221287-138-9-1949. [DOI] [PubMed] [Google Scholar]
  11. Loessner M. J., Krause I. B., Henle T., Scherer S. Structural proteins and DNA characteristics of 14 Listeria typing bacteriophages. J Gen Virol. 1994 Apr;75(Pt 4):701–710. doi: 10.1099/0022-1317-75-4-701. [DOI] [PubMed] [Google Scholar]
  12. Loessner M. J., Scherer S. Organization and transcriptional analysis of the Listeria phage A511 late gene region comprising the major capsid and tail sheath protein genes cps and tsh. J Bacteriol. 1995 Nov;177(22):6601–6609. doi: 10.1128/jb.177.22.6601-6609.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Loessner M. J., Schneider A., Scherer S. A new procedure for efficient recovery of DNA, RNA, and proteins from Listeria cells by rapid lysis with a recombinant bacteriophage endolysin. Appl Environ Microbiol. 1995 Mar;61(3):1150–1152. doi: 10.1128/aem.61.3.1150-1152.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Loessner M. J., Schneider A., Scherer S. Modified Listeria bacteriophage lysin genes (ply) allow efficient overexpression and one-step purification of biochemically active fusion proteins. Appl Environ Microbiol. 1996 Aug;62(8):3057–3060. doi: 10.1128/aem.62.8.3057-3060.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Loessner M. J., Wendlinger G., Scherer S. Heterogeneous endolysins in Listeria monocytogenes bacteriophages: a new class of enzymes and evidence for conserved holin genes within the siphoviral lysis cassettes. Mol Microbiol. 1995 Jun;16(6):1231–1241. doi: 10.1111/j.1365-2958.1995.tb02345.x. [DOI] [PubMed] [Google Scholar]
  16. Longchamp P. F., Mauël C., Karamata D. Lytic enzymes associated with defective prophages of Bacillus subtilis: sequencing and characterization of the region comprising the N-acetylmuramoyl-L-alanine amidase gene of prophage PBSX. Microbiology. 1994 Aug;140(Pt 8):1855–1867. doi: 10.1099/13500872-140-8-1855. [DOI] [PubMed] [Google Scholar]
  17. Plasterk R. H., Brinkman A., van de Putte P. DNA inversions in the chromosome of Escherichia coli and in bacteriophage Mu: relationship to other site-specific recombination systems. Proc Natl Acad Sci U S A. 1983 Sep;80(17):5355–5358. doi: 10.1073/pnas.80.17.5355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Potvin C., Leclerc D., Tremblay G., Asselin A., Bellemare G. Cloning, sequencing and expression of a Bacillus bacteriolytic enzyme in Escherichia coli. Mol Gen Genet. 1988 Oct;214(2):241–248. doi: 10.1007/BF00337717. [DOI] [PubMed] [Google Scholar]
  19. Romero A., Lopez R., Garcia P. Characterization of the pneumococcal bacteriophage HB-3 amidase: cloning and expression in Escherichia coli. J Virol. 1990 Jan;64(1):137–142. doi: 10.1128/jvi.64.1.137-142.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Sanz J. M., Díaz E., García J. L. Studies on the structure and function of the N-terminal domain of the pneumococcal murein hydrolases. Mol Microbiol. 1992 Apr;6(7):921–931. doi: 10.1111/j.1365-2958.1992.tb01542.x. [DOI] [PubMed] [Google Scholar]
  21. Schleifer K. H., Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev. 1972 Dec;36(4):407–477. doi: 10.1128/br.36.4.407-477.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Steiner M., Lubitz W., Bläsi U. The missing link in phage lysis of gram-positive bacteria: gene 14 of Bacillus subtilis phage phi 29 encodes the functional homolog of lambda S protein. J Bacteriol. 1993 Feb;175(4):1038–1042. doi: 10.1128/jb.175.4.1038-1042.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Studier F. W., Moffatt B. A. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol. 1986 May 5;189(1):113–130. doi: 10.1016/0022-2836(86)90385-2. [DOI] [PubMed] [Google Scholar]
  24. Studier F. W., Rosenberg A. H., Dunn J. J., Dubendorff J. W. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 1990;185:60–89. doi: 10.1016/0076-6879(90)85008-c. [DOI] [PubMed] [Google Scholar]
  25. Tabor S., Richardson C. C. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci U S A. 1985 Feb;82(4):1074–1078. doi: 10.1073/pnas.82.4.1074. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Tomioka S., Nikaido T., Miyakawa T., Matsuhashi M. Mutation of the N-acetylmuramyl-L-alanine amidase gene of Escherichia coli K-12. J Bacteriol. 1983 Oct;156(1):463–465. doi: 10.1128/jb.156.1.463-465.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Troup B., Jahn M., Hungerer C., Jahn D. Isolation of the hemF operon containing the gene for the Escherichia coli aerobic coproporphyrinogen III oxidase by in vivo complementation of a yeast HEM13 mutant. J Bacteriol. 1994 Feb;176(3):673–680. doi: 10.1128/jb.176.3.673-680.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Vasala A., Välkkilä M., Caldentey J., Alatossava T. Genetic and biochemical characterization of the Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H lysin. Appl Environ Microbiol. 1995 Nov;61(11):4004–4011. doi: 10.1128/aem.61.11.4004-4011.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Väisänen O. M., Mwaisumo N. J., Salkinoja-Salonen M. S. Differentiation of dairy strains of the Bacillus cereus group by phage typing, minimum growth temperature, and fatty acid analysis. J Appl Bacteriol. 1991 Apr;70(4):315–324. doi: 10.1111/j.1365-2672.1991.tb02942.x. [DOI] [PubMed] [Google Scholar]
  30. Ward J. B., Curtis C. A., Taylor C., Buxton R. S. Purification and characterization of two phage PBSX-induced lytic enzymes of Bacillus subtilis 168: an N-acetylmuramoyl-L-alanine amidase and an N-acetylmuramidase. J Gen Microbiol. 1982 Jun;128(6):1171–1178. doi: 10.1099/00221287-128-6-1171. [DOI] [PubMed] [Google Scholar]
  31. Watson N., Olson E. R. Point mutations in a pBR322-based expression plasmid resulting in increased synthesis of bovine growth hormone in Escherichia coli. Gene. 1990 Feb 14;86(2):137–144. doi: 10.1016/0378-1119(90)90272-s. [DOI] [PubMed] [Google Scholar]
  32. Young R. Bacteriophage lysis: mechanism and regulation. Microbiol Rev. 1992 Sep;56(3):430–481. doi: 10.1128/mr.56.3.430-481.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Young R., Bläsi U. Holins: form and function in bacteriophage lysis. FEMS Microbiol Rev. 1995 Aug;17(1-2):191–205. doi: 10.1111/j.1574-6976.1995.tb00202.x. [DOI] [PubMed] [Google Scholar]
  34. Zink R., Loessner M. J. Classification of virulent and temperate bacteriophages of Listeria spp. on the basis of morphology and protein analysis. Appl Environ Microbiol. 1992 Jan;58(1):296–302. doi: 10.1128/aem.58.1.296-302.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Zink R., Loessner M. J., Scherer S. Characterization of cryptic prophages (monocins) in Listeria and sequence analysis of a holin/endolysin gene. Microbiology. 1995 Oct;141(Pt 10):2577–2584. doi: 10.1099/13500872-141-10-2577. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES