Abstract
Escherichia coli hlyCABD operons encode the polypeptide component (HlyA) of an extracellular cytolytic toxin as well as proteins required for its acylation (HlyC) and sec-independent secretion (HlyBD). The E. coli protein RfaH is required for wild-type hemolysin expression at the level of hlyCABD transcript elongation (J. A. Leeds and R. A. Welch, J. Bacteriol. 178:1850-1857, 1996). RfaH is also required for the transcription of wild-type levels of mRNA from promoter-distal genes in the rfaQ-K, traY-Z, and rplK-rpoC gene clusters, supporting the role for RfaH in transcriptional elongation. All or portions of a common 39-bp sequence termed JUMPStart are present in the untranslated regions of RfaH-enhanced operons. In this study, we tested the model that the JUMPStart sequence and RfaH are part of the same functional pathway. We examined the effect of JUMPStart deletion mutations within the untranslated leader of a chromosomally derived hlyCABD operon on hly RNA and HlyA protein levels in either wild-type or rfaH null mutant E. coli. We also provide in vivo physical evidence that is consistent with RNA polymerase pausing at the wild-type JUMPStart sequences.
Full Text
The Full Text of this article is available as a PDF (1.3 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bailey M. J., Hughes C., Koronakis V. Increased distal gene transcription by the elongation factor RfaH, a specialized homologue of NusG. Mol Microbiol. 1996 Nov;22(4):729–737. doi: 10.1046/j.1365-2958.1996.d01-1726.x. [DOI] [PubMed] [Google Scholar]
- Bailey M. J., Koronakis V., Schmoll T., Hughes C. Escherichia coli HlyT protein, a transcriptional activator of haemolysin synthesis and secretion, is encoded by the rfaH (sfrB) locus required for expression of sex factor and lipopolysaccharide genes. Mol Microbiol. 1992 Apr;6(8):1003–1012. doi: 10.1111/j.1365-2958.1992.tb02166.x. [DOI] [PubMed] [Google Scholar]
- Berg K. L., Squires C., Squires C. L. Ribosomal RNA operon anti-termination. Function of leader and spacer region box B-box A sequences and their conservation in diverse micro-organisms. J Mol Biol. 1989 Oct 5;209(3):345–358. doi: 10.1016/0022-2836(89)90002-8. [DOI] [PubMed] [Google Scholar]
- Beutin L., Manning P. A., Achtman M., Willetts N. sfrA and sfrB products of Escherichia coli K-12 are transcriptional control factors. J Bacteriol. 1981 Feb;145(2):840–844. doi: 10.1128/jb.145.2.840-844.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brazas R., Davie E., Farewell A., Rothfield L. I. Transcriptional organization of the rfaGBIJ locus of Salmonella typhimurium. J Bacteriol. 1991 Oct;173(19):6168–6173. doi: 10.1128/jb.173.19.6168-6173.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Burns C. M., Richardson J. P. NusG is required to overcome a kinetic limitation to Rho function at an intragenic terminator. Proc Natl Acad Sci U S A. 1995 May 23;92(11):4738–4742. doi: 10.1073/pnas.92.11.4738. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Burova E., Hung S. C., Sagitov V., Stitt B. L., Gottesman M. E. Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro. J Bacteriol. 1995 Mar;177(5):1388–1392. doi: 10.1128/jb.177.5.1388-1392.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Choe M., Reznikoff W. S. Anaerobically expressed Escherichia coli genes identified by operon fusion techniques. J Bacteriol. 1991 Oct;173(19):6139–6146. doi: 10.1128/jb.173.19.6139-6146.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Creeger E. S., Schulte T., Rothfield L. I. Regulation of membrane glycosyltransferases by the sfrB and rfaH genes of Escherichia coli and Salmonella typhimurium. J Biol Chem. 1984 Mar 10;259(5):3064–3069. [PubMed] [Google Scholar]
- Das A. How the phage lambda N gene product suppresses transcription termination: communication of RNA polymerase with regulatory proteins mediated by signals in nascent RNA. J Bacteriol. 1992 Nov;174(21):6711–6716. doi: 10.1128/jb.174.21.6711-6716.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Emory S. A., Belasco J. G. The ompA 5' untranslated RNA segment functions in Escherichia coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to translational efficiency. J Bacteriol. 1990 Aug;172(8):4472–4481. doi: 10.1128/jb.172.8.4472-4481.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Felmlee T., Pellett S., Welch R. A. Nucleotide sequence of an Escherichia coli chromosomal hemolysin. J Bacteriol. 1985 Jul;163(1):94–105. doi: 10.1128/jb.163.1.94-105.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gaffney D., Skurray R., Willetts N. Regulation of the F conjugation genes studied by hybridization and tra-lacZ fusion. J Mol Biol. 1983 Jul 25;168(1):103–122. doi: 10.1016/s0022-2836(83)80325-8. [DOI] [PubMed] [Google Scholar]
- Hobbs M., Reeves P. R. The JUMPstart sequence: a 39 bp element common to several polysaccharide gene clusters. Mol Microbiol. 1994 Jun;12(5):855–856. doi: 10.1111/j.1365-2958.1994.tb01071.x. [DOI] [PubMed] [Google Scholar]
- Kainz M., Roberts J. Structure of transcription elongation complexes in vivo. Science. 1992 Feb 14;255(5046):838–841. doi: 10.1126/science.1536008. [DOI] [PubMed] [Google Scholar]
- Knapp S., Then I., Wels W., Michel G., Tschäpe H., Hacker J., Goebel W. Analysis of the flanking regions from different haemolysin determinants of Escherichia coli. Mol Gen Genet. 1985;200(3):385–392. doi: 10.1007/BF00425721. [DOI] [PubMed] [Google Scholar]
- Leeds J. A., Welch R. A. RfaH enhances elongation of Escherichia coli hlyCABD mRNA. J Bacteriol. 1996 Apr;178(7):1850–1857. doi: 10.1128/jb.178.7.1850-1857.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Li J., Mason S. W., Greenblatt J. Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription. Genes Dev. 1993 Jan;7(1):161–172. doi: 10.1101/gad.7.1.161. [DOI] [PubMed] [Google Scholar]
- Mason S. W., Li J., Greenblatt J. Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda. J Biol Chem. 1992 Sep 25;267(27):19418–19426. [PubMed] [Google Scholar]
- Müller D., Hughes C., Goebel W. Relationship between plasmid and chromosomal hemolysin determinants of Escherichia coli. J Bacteriol. 1983 Feb;153(2):846–851. doi: 10.1128/jb.153.2.846-851.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nieto J. M., Bailey M. J., Hughes C., Koronakis V. Suppression of transcription polarity in the Escherichia coli haemolysin operon by a short upstream element shared by polysaccharide and DNA transfer determinants. Mol Microbiol. 1996 Feb;19(4):705–713. doi: 10.1046/j.1365-2958.1996.446951.x. [DOI] [PubMed] [Google Scholar]
- Pradel E., Schnaitman C. A. Effect of rfaH (sfrB) and temperature on expression of rfa genes of Escherichia coli K-12. J Bacteriol. 1991 Oct;173(20):6428–6431. doi: 10.1128/jb.173.20.6428-6431.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ralling G., Linn T. Evidence that Rho and NusA are involved in termination in the rplL-rpoB intercistronic region. J Bacteriol. 1987 May;169(5):2277–2280. doi: 10.1128/jb.169.5.2277-2280.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rehemtulla A., Kadam S. K., Sanderson K. E. Cloning and analysis of the sfrB (sex factor repression) gene of Escherichia coli K-12. J Bacteriol. 1986 May;166(2):651–657. doi: 10.1128/jb.166.2.651-657.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stevens M. P., Hänfling P., Jann B., Jann K., Roberts I. S. Regulation of Escherichia coli K5 capsular polysaccharide expression: evidence for involvement of RfaH in the expression of group II capsules. FEMS Microbiol Lett. 1994 Nov 15;124(1):93–98. doi: 10.1111/j.1574-6968.1994.tb07267.x. [DOI] [PubMed] [Google Scholar]
- Sullivan S. L., Gottesman M. E. Requirement for E. coli NusG protein in factor-dependent transcription termination. Cell. 1992 Mar 6;68(5):989–994. doi: 10.1016/0092-8674(92)90041-a. [DOI] [PubMed] [Google Scholar]
- Sullivan S. L., Ward D. F., Gottesman M. E. Effect of Escherichia coli nusG function on lambda N-mediated transcription antitermination. J Bacteriol. 1992 Feb;174(4):1339–1344. doi: 10.1128/jb.174.4.1339-1344.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Welch R. A., Bauer M. E., Kent A. D., Leeds J. A., Moayeri M., Regassa L. B., Swenson D. L. Battling against host phagocytes: the wherefore of the RTX family of toxins? Infect Agents Dis. 1995 Dec;4(4):254–272. [PubMed] [Google Scholar]
- Welch R. A., Dellinger E. P., Minshew B., Falkow S. Haemolysin contributes to virulence of extra-intestinal E. coli infections. Nature. 1981 Dec 17;294(5842):665–667. doi: 10.1038/294665a0. [DOI] [PubMed] [Google Scholar]
- Welch R. A., Hull R., Falkow S. Molecular cloning and physical characterization of a chromosomal hemolysin from Escherichia coli. Infect Immun. 1983 Oct;42(1):178–186. doi: 10.1128/iai.42.1.178-186.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Welch R. A., Pellett S. Transcriptional organization of the Escherichia coli hemolysin genes. J Bacteriol. 1988 Apr;170(4):1622–1630. doi: 10.1128/jb.170.4.1622-1630.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Whalen W., Ghosh B., Das A. NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2494–2498. doi: 10.1073/pnas.85.8.2494. [DOI] [PMC free article] [PubMed] [Google Scholar]