Abstract
We have cloned the secA gene of the alpha-subclass purple bacterium Rhodobacter capsulatus, a close relative to the mitochondrial ancestor, and purified the protein after expression in Escherichia coli. R. capsulatus SecA contains 904 amino acids with 53% identity to E. coli and 54% identity to Caulobacter crescentus SecA. In contrast to the nearly equal partitioning of E. coli SecA between the cytosol and plasma membrane, R. capsulatus SecA is recovered predominantly from the membrane fraction. A SecA-deficient, cell-free synthesis-translocation system prepared from R. capsulatus is used to demonstrate translocation activity of the purified R. capsulatus SecA. This translocation activity is then compared to that of the E. coli counterpart by using various precursor proteins and inside-out membrane vesicles prepared from both bacteria. We find a preference of the R. capsulatus SecA for the homologous membrane vesicles whereas E. coli SecA is active with either type of membrane. Furthermore, the two SecA proteins clearly select between distinct precursor proteins. In addition, we show here for the first time that a bacterial c-type cytochrome utilizes the canonical, Sec-dependent export pathway.
Full Text
The Full Text of this article is available as a PDF (1.9 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Ahn T., Kim H. SecA of Escherichia coli traverses lipid bilayer of phospholipid vesicles. Biochem Biophys Res Commun. 1994 Aug 30;203(1):326–330. doi: 10.1006/bbrc.1994.2185. [DOI] [PubMed] [Google Scholar]
- Ahrem B., Hoffschulte H. K., Müller M. In vitro membrane assembly of a polytopic, transmembrane protein results in an enzymatically active conformation. J Cell Biol. 1989 May;108(5):1637–1646. doi: 10.1083/jcb.108.5.1637. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Akita M., Sasaki S., Matsuyama S., Mizushima S. SecA interacts with secretory proteins by recognizing the positive charge at the amino terminus of the signal peptide in Escherichia coli. J Biol Chem. 1990 May 15;265(14):8164–8169. [PubMed] [Google Scholar]
- Akita M., Shinkai A., Matsuyama S., Mizushima S. SecA, an essential component of the secretory machinery of Escherichia coli, exists as homodimer. Biochem Biophys Res Commun. 1991 Jan 15;174(1):211–216. doi: 10.1016/0006-291x(91)90507-4. [DOI] [PubMed] [Google Scholar]
- Altman E., Emr S. D., Kumamoto C. A. The presence of both the signal sequence and a region of mature LamB protein is required for the interaction of LamB with the export factor SecB. J Biol Chem. 1990 Oct 25;265(30):18154–18160. [PubMed] [Google Scholar]
- Amann E., Brosius J., Ptashne M. Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli. Gene. 1983 Nov;25(2-3):167–178. doi: 10.1016/0378-1119(83)90222-6. [DOI] [PubMed] [Google Scholar]
- Amann E., Ochs B., Abel K. J. Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene. 1988 Sep 30;69(2):301–315. doi: 10.1016/0378-1119(88)90440-4. [DOI] [PubMed] [Google Scholar]
- Berghöfer J., Karnauchov I., Herrmann R. G., Klösgen R. B. Isolation and characterization of a cDNA encoding the SecA protein from spinach chloroplasts. Evidence for azide resistance of Sec-dependent protein translocation across thylakoid membranes in spinach. J Biol Chem. 1995 Aug 4;270(31):18341–18346. doi: 10.1074/jbc.270.31.18341. [DOI] [PubMed] [Google Scholar]
- Breukink E., Demel R. A., de Korte-Kool G., de Kruijff B. SecA insertion into phospholipids is stimulated by negatively charged lipids and inhibited by ATP: a monolayer study. Biochemistry. 1992 Feb 4;31(4):1119–1124. doi: 10.1021/bi00119a021. [DOI] [PubMed] [Google Scholar]
- Breukink E., Nouwen N., van Raalte A., Mizushima S., Tommassen J., de Kruijff B. The C terminus of SecA is involved in both lipid binding and SecB binding. J Biol Chem. 1995 Apr 7;270(14):7902–7907. doi: 10.1074/jbc.270.14.7902. [DOI] [PubMed] [Google Scholar]
- Cabelli R. J., Dolan K. M., Qian L. P., Oliver D. B. Characterization of membrane-associated and soluble states of SecA protein from wild-type and SecA51(TS) mutant strains of Escherichia coli. J Biol Chem. 1991 Dec 25;266(36):24420–24427. [PubMed] [Google Scholar]
- Chun S. Y., Randall L. L. In vivo studies of the role of SecA during protein export in Escherichia coli. J Bacteriol. 1994 Jul;176(14):4197–4203. doi: 10.1128/jb.176.14.4197-4203.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 1988 Nov 25;16(22):10881–10890. doi: 10.1093/nar/16.22.10881. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cunningham K., Lill R., Crooke E., Rice M., Moore K., Wickner W., Oliver D. SecA protein, a peripheral protein of the Escherichia coli plasma membrane, is essential for the functional binding and translocation of proOmpA. EMBO J. 1989 Mar;8(3):955–959. doi: 10.1002/j.1460-2075.1989.tb03457.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cunningham K., Wickner W. Specific recognition of the leader region of precursor proteins is required for the activation of translocation ATPase of Escherichia coli. Proc Natl Acad Sci U S A. 1989 Nov;86(22):8630–8634. doi: 10.1073/pnas.86.22.8630. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Driessen A. J. How proteins cross the bacterial cytoplasmic membrane. J Membr Biol. 1994 Nov;142(2):145–159. doi: 10.1007/BF00234937. [DOI] [PubMed] [Google Scholar]
- Driessen A. J. SecA, the peripheral subunit of the Escherichia coli precursor protein translocase, is functional as a dimer. Biochemistry. 1993 Dec 7;32(48):13190–13197. doi: 10.1021/bi00211a030. [DOI] [PubMed] [Google Scholar]
- Dryden S. C., Dowhan W. Isolation and expression of the Rhodobacter sphaeroides gene (pgsA) encoding phosphatidylglycerophosphate synthase. J Bacteriol. 1996 Feb;178(4):1030–1038. doi: 10.1128/jb.178.4.1030-1038.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Economou A., Pogliano J. A., Beckwith J., Oliver D. B., Wickner W. SecA membrane cycling at SecYEG is driven by distinct ATP binding and hydrolysis events and is regulated by SecD and SecF. Cell. 1995 Dec 29;83(7):1171–1181. doi: 10.1016/0092-8674(95)90143-4. [DOI] [PubMed] [Google Scholar]
- Economou A., Wickner W. SecA promotes preprotein translocation by undergoing ATP-driven cycles of membrane insertion and deinsertion. Cell. 1994 Sep 9;78(5):835–843. doi: 10.1016/s0092-8674(94)90582-7. [DOI] [PubMed] [Google Scholar]
- Ernst F., Hoffschulte H. K., Thome-Kromer B., Swidersky U. E., Werner P. K., Müller M. Precursor-specific requirements for SecA, SecB, and delta muH+ during protein export of Escherichia coli. J Biol Chem. 1994 Apr 29;269(17):12840–12845. [PubMed] [Google Scholar]
- Glick B. S., Von Heijne G. Saccharomyces cerevisiae mitochondria lack a bacterial-type sec machinery. Protein Sci. 1996 Dec;5(12):2651–2652. doi: 10.1002/pro.5560051229. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grimberg J., Maguire S., Belluscio L. A simple method for the preparation of plasmid and chromosomal E. coli DNA. Nucleic Acids Res. 1989 Nov 11;17(21):8893–8893. doi: 10.1093/nar/17.21.8893. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hartl F. U., Lecker S., Schiebel E., Hendrick J. P., Wickner W. The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane. Cell. 1990 Oct 19;63(2):269–279. doi: 10.1016/0092-8674(90)90160-g. [DOI] [PubMed] [Google Scholar]
- Hendrick J. P., Wickner W. SecA protein needs both acidic phospholipids and SecY/E protein for functional high-affinity binding to the Escherichia coli plasma membrane. J Biol Chem. 1991 Dec 25;266(36):24596–24600. [PubMed] [Google Scholar]
- Hoffschulte H. K., Drees B., Müller M. Identification of a soluble SecA/SecB complex by means of a subfractionated cell-free export system. J Biol Chem. 1994 Apr 29;269(17):12833–12839. [PubMed] [Google Scholar]
- Kang P. J., Shapiro L. Cell cycle arrest of a Caulobacter crescentus secA mutant. J Bacteriol. 1994 Aug;176(16):4958–4965. doi: 10.1128/jb.176.16.4958-4965.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim Y. J., Rajapandi T., Oliver D. SecA protein is exposed to the periplasmic surface of the E. coli inner membrane in its active state. Cell. 1994 Sep 9;78(5):845–853. doi: 10.1016/s0092-8674(94)90602-5. [DOI] [PubMed] [Google Scholar]
- Kimura E., Akita M., Matsuyama S., Mizushima S. Determination of a region in SecA that interacts with presecretory proteins in Escherichia coli. J Biol Chem. 1991 Apr 5;266(10):6600–6606. [PubMed] [Google Scholar]
- Klose M., Schimz K. L., van der Wolk J., Driessen A. J., Freudl R. Lysine 106 of the putative catalytic ATP-binding site of the Bacillus subtilis SecA protein is required for functional complementation of Escherichia coli secA mutants in vivo. J Biol Chem. 1993 Feb 25;268(6):4504–4510. [PubMed] [Google Scholar]
- Kreusch A., Neubüser A., Schiltz E., Weckesser J., Schulz G. E. Structure of the membrane channel porin from Rhodopseudomonas blastica at 2.0 A resolution. Protein Sci. 1994 Jan;3(1):58–63. doi: 10.1002/pro.5560030108. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kumamoto C. A., Francetić O. Highly selective binding of nascent polypeptides by an Escherichia coli chaperone protein in vivo. J Bacteriol. 1993 Apr;175(8):2184–2188. doi: 10.1128/jb.175.8.2184-2188.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kusters R., Huijbregts R., de Kruijff B. Elevated cytosolic concentrations of SecA compensate for a protein translocation defect in Escherichia coli cells with reduced levels of negatively charged phospholipids. FEBS Lett. 1992 Aug 10;308(1):97–100. doi: 10.1016/0014-5793(92)81060-y. [DOI] [PubMed] [Google Scholar]
- Liebke H. H. Multiple SecA protein isoforms in Escherichia coli. J Bacteriol. 1987 Mar;169(3):1174–1181. doi: 10.1128/jb.169.3.1174-1181.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lill R., Dowhan W., Wickner W. The ATPase activity of SecA is regulated by acidic phospholipids, SecY, and the leader and mature domains of precursor proteins. Cell. 1990 Jan 26;60(2):271–280. doi: 10.1016/0092-8674(90)90742-w. [DOI] [PubMed] [Google Scholar]
- Mayer A., Neupert W., Lill R. Translocation of apocytochrome c across the outer membrane of mitochondria. J Biol Chem. 1995 May 26;270(21):12390–12397. doi: 10.1074/jbc.270.21.12390. [DOI] [PubMed] [Google Scholar]
- McNicholas P., Rajapandi T., Oliver D. SecA proteins of Bacillus subtilis and Escherichia coli possess homologous amino-terminal ATP-binding domains regulating integration into the plasma membrane. J Bacteriol. 1995 Dec;177(24):7231–7237. doi: 10.1128/jb.177.24.7231-7237.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mitchell C., Oliver D. Two distinct ATP-binding domains are needed to promote protein export by Escherichia coli SecA ATPase. Mol Microbiol. 1993 Nov;10(3):483–497. doi: 10.1111/j.1365-2958.1993.tb00921.x. [DOI] [PubMed] [Google Scholar]
- Müller M., Blobel G. In vitro translocation of bacterial proteins across the plasma membrane of Escherichia coli. Proc Natl Acad Sci U S A. 1984 Dec;81(23):7421–7425. doi: 10.1073/pnas.81.23.7421. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Müller M., Fisher R. P., Rienhöfer-Schweer A., Hoffschulte H. K. DCCD inhibits protein translocation into plasma membrane vesicles from Escherichia coli at two different steps. EMBO J. 1987 Dec 1;6(12):3855–3861. doi: 10.1002/j.1460-2075.1987.tb02723.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nakai M., Goto A., Nohara T., Sugita D., Endo T. Identification of the SecA protein homolog in pea chloroplasts and its possible involvement in thylakoidal protein transport. J Biol Chem. 1994 Dec 16;269(50):31338–31341. [PubMed] [Google Scholar]
- Oliver D. B., Beckwith J. Regulation of a membrane component required for protein secretion in Escherichia coli. Cell. 1982 Aug;30(1):311–319. doi: 10.1016/0092-8674(82)90037-x. [DOI] [PubMed] [Google Scholar]
- Oliver D. B. SecA protein: autoregulated ATPase catalysing preprotein insertion and translocation across the Escherichia coli inner membrane. Mol Microbiol. 1993 Jan;7(2):159–165. doi: 10.1111/j.1365-2958.1993.tb01107.x. [DOI] [PubMed] [Google Scholar]
- Rajapandi T., Oliver D. Integration of SecA protein into the Escherichia coli inner membrane is regulated by its amino-terminal ATP-binding domain. Mol Microbiol. 1996 Apr;20(1):43–51. doi: 10.1111/j.1365-2958.1996.tb02487.x. [DOI] [PubMed] [Google Scholar]
- Sadaie Y., Takamatsu H., Nakamura K., Yamane K. Sequencing reveals similarity of the wild-type div+ gene of Bacillus subtilis to the Escherichia coli secA gene. Gene. 1991 Feb 1;98(1):101–105. doi: 10.1016/0378-1119(91)90110-w. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schiebel E., Driessen A. J., Hartl F. U., Wickner W. Delta mu H+ and ATP function at different steps of the catalytic cycle of preprotein translocase. Cell. 1991 Mar 8;64(5):927–939. doi: 10.1016/0092-8674(91)90317-r. [DOI] [PubMed] [Google Scholar]
- Schimz K. L., Decker G., Frings E., Meens J., Klein M., Müller M. A cell-free protein translocation system prepared entirely from a gram-positive organism. FEBS Lett. 1995 Mar 27;362(1):29–33. doi: 10.1016/0014-5793(95)00180-h. [DOI] [PubMed] [Google Scholar]
- Schmidt M. G., Rollo E. E., Grodberg J., Oliver D. B. Nucleotide sequence of the secA gene and secA(Ts) mutations preventing protein export in Escherichia coli. J Bacteriol. 1988 Aug;170(8):3404–3414. doi: 10.1128/jb.170.8.3404-3414.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shinkai A., Mei L. H., Tokuda H., Mizushima S. The conformation of SecA, as revealed by its protease sensitivity, is altered upon interaction with ATP, presecretory proteins, everted membrane vesicles, and phospholipids. J Biol Chem. 1991 Mar 25;266(9):5827–5833. [PubMed] [Google Scholar]
- Sugimura K., Nishihara T. Purification, characterization, and primary structure of Escherichia coli protease VII with specificity for paired basic residues: identity of protease VII and OmpT. J Bacteriol. 1988 Dec;170(12):5625–5632. doi: 10.1128/jb.170.12.5625-5632.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Swidersky U. E., Hoffschulte H. K., Müller M. Determinants of membrane-targeting and transmembrane translocation during bacterial protein export. EMBO J. 1990 Jun;9(6):1777–1785. doi: 10.1002/j.1460-2075.1990.tb08302.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Takamatsu H., Fuma S., Nakamura K., Sadaie Y., Shinkai A., Matsuyama S., Mizushima S., Yamane K. In vivo and in vitro characterization of the secA gene product of Bacillus subtilis. J Bacteriol. 1992 Jul;174(13):4308–4316. doi: 10.1128/jb.174.13.4308-4316.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thome B. M., Müller M. Skp is a periplasmic Escherichia coli protein requiring SecA and SecY for export. Mol Microbiol. 1991 Nov;5(11):2815–2821. doi: 10.1111/j.1365-2958.1991.tb01990.x. [DOI] [PubMed] [Google Scholar]
- Thöny-Meyer L., Ritz D., Hennecke H. Cytochrome c biogenesis in bacteria: a possible pathway begins to emerge. Mol Microbiol. 1994 Apr;12(1):1–9. doi: 10.1111/j.1365-2958.1994.tb00988.x. [DOI] [PubMed] [Google Scholar]
- Troschel D., Müller M. Development of a cell-free system to study the membrane assembly of photosynthetic proteins of Rhodobacter capsulatus. J Cell Biol. 1990 Jul;111(1):87–94. doi: 10.1083/jcb.111.1.87. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Uchida K., Mori H., Mizushima S. Stepwise movement of preproteins in the process of translocation across the cytoplasmic membrane of Escherichia coli. J Biol Chem. 1995 Dec 29;270(52):30862–30868. doi: 10.1074/jbc.270.52.30862. [DOI] [PubMed] [Google Scholar]
- Ulbrandt N. D., London E., Oliver D. B. Deep penetration of a portion of Escherichia coli SecA protein into model membranes is promoted by anionic phospholipids and by partial unfolding. J Biol Chem. 1992 Jul 25;267(21):15184–15192. [PubMed] [Google Scholar]
- Valentin K. SecA is plastid-encoded in a red alga: implications for the evolution of plastid genomes and the thylakoid protein import apparatus. Mol Gen Genet. 1993 Jan;236(2-3):245–250. doi: 10.1007/BF00277119. [DOI] [PubMed] [Google Scholar]
- Watanabe M., Blobel G. SecA protein is required for translocation of a model precursor protein into inverted vesicles of Escherichia coli plasma membrane. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):9011–9015. doi: 10.1073/pnas.90.19.9011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weaver A. J., McDowall A. W., Oliver D. B., Deisenhofer J. Electron microscopy of thin-sectioned three-dimensional crystals of SecA protein from Escherichia coli: structure in projection at 40 A resolution. J Struct Biol. 1992 Sep-Oct;109(2):87–96. doi: 10.1016/1047-8477(92)90040-h. [DOI] [PubMed] [Google Scholar]
- Wickner W., Driessen A. J., Hartl F. U. The enzymology of protein translocation across the Escherichia coli plasma membrane. Annu Rev Biochem. 1991;60:101–124. doi: 10.1146/annurev.bi.60.070191.000533. [DOI] [PubMed] [Google Scholar]
- Wieseler B., Müller M. Translocation of precytochrome c2 into intracytoplasmic membrane vesicles of Rhodobacter capsulatus requires a peripheral membrane protein. Mol Microbiol. 1993 Jan;7(2):167–176. doi: 10.1111/j.1365-2958.1993.tb01108.x. [DOI] [PubMed] [Google Scholar]
- Wieseler B., Schiltz E., Müller M. Identification and solubilization of a signal peptidase from the phototrophic bacterium Rhodobacter capsulatus. FEBS Lett. 1992 Feb 24;298(2-3):273–276. doi: 10.1016/0014-5793(92)80075-r. [DOI] [PubMed] [Google Scholar]
- Woese C. R. Bacterial evolution. Microbiol Rev. 1987 Jun;51(2):221–271. doi: 10.1128/mr.51.2.221-271.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yuan J., Henry R., McCaffery M., Cline K. SecA homolog in protein transport within chloroplasts: evidence for endosymbiont-derived sorting. Science. 1994 Nov 4;266(5186):796–798. doi: 10.1126/science.7973633. [DOI] [PubMed] [Google Scholar]
- de Cock H., Tommassen J. Conservation of components of the Escherichia coli export machinery in prokaryotes. FEMS Microbiol Lett. 1991 May 15;64(2-3):195–199. doi: 10.1016/0378-1097(91)90594-z. [DOI] [PubMed] [Google Scholar]
- de Cock H., Tommassen J. SecB-binding does not maintain the translocation-competent state of prePhoE. Mol Microbiol. 1992 Mar;6(5):599–604. doi: 10.1111/j.1365-2958.1992.tb01506.x. [DOI] [PubMed] [Google Scholar]
- van der Wolk J., Klose M., Breukink E., Demel R. A., de Kruijff B., Freudl R., Driessen A. J. Characterization of a Bacillus subtilis SecA mutant protein deficient in translocation ATPase and release from the membrane. Mol Microbiol. 1993 Apr;8(1):31–42. doi: 10.1111/j.1365-2958.1993.tb01200.x. [DOI] [PubMed] [Google Scholar]