Abstract
The repression of aroP expression which is mediated by the TyrR protein with phenylalanine, tyrosine, or tryptophan has been shown to be primarily a direct result of TyrR-mediated activation of a divergent promoter, P3, which directs the RNA polymerase away from promoter P1. Evidence which has been presented to support this conclusion is as follows. Repression of P1 does not occur either in vitro or in vivo if wild-type TyrR protein is substituted by the activation-negative mutant RQ10 (with an R-to-Q change at position 10). Repression of P1 is greatly diminished if the P3 promoter is inactivated or if a 5-bp insertion is made between the P3 promoter and the binding sites for TyrR. Repression is also abolished if the promoter strength of P1 is increased or a putative UP element associated with P3 is altered. Repression of the second promoter, P2, still occurs if the wild-type TyrR protein is substituted with RQ10 or EQ274. The tryptophan-mediated repression of aroP does not involve the TrpR protein.
Full Text
The Full Text of this article is available as a PDF (365.9 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Andrews A. E., Dickson B., Lawley B., Cobbett C., Pittard A. J. Importance of the position of TYR R boxes for repression and activation of the tyrP and aroF genes in Escherichia coli. J Bacteriol. 1991 Aug;173(16):5079–5085. doi: 10.1128/jb.173.16.5079-5085.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Baseggio N., Davies W. D., Davidson B. E. Identification of the promoter, operator, and 5' and 3' ends of the mRNA of the Escherichia coli K-12 gene aroG. J Bacteriol. 1990 May;172(5):2547–2557. doi: 10.1128/jb.172.5.2547-2557.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chye M. L., Pittard J. Transcription control of the aroP gene in Escherichia coli K-12: analysis of operator mutants. J Bacteriol. 1987 Jan;169(1):386–393. doi: 10.1128/jb.169.1.386-393.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cornish E. C., Argyropoulos V. P., Pittard J., Davidson B. E. Structure of the Escherichia coli K12 regulatory gene tyrR. Nucleotide sequence and sites of initiation of transcription and translation. J Biol Chem. 1986 Jan 5;261(1):403–410. [PubMed] [Google Scholar]
- Hanamura A., Aiba H. Molecular mechanism of negative autoregulation of Escherichia coli crp gene. Nucleic Acids Res. 1991 Aug 25;19(16):4413–4419. doi: 10.1093/nar/19.16.4413. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Heatwole V. M., Somerville R. L. Synergism between the Trp repressor and Tyr repressor in repression of the aroL promoter of Escherichia coli K-12. J Bacteriol. 1992 Jan;174(1):331–335. doi: 10.1128/jb.174.1.331-335.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Igarashi K., Ishihama A. Bipartite functional map of the E. coli RNA polymerase alpha subunit: involvement of the C-terminal region in transcription activation by cAMP-CRP. Cell. 1991 Jun 14;65(6):1015–1022. doi: 10.1016/0092-8674(91)90553-b. [DOI] [PubMed] [Google Scholar]
- Kieny M. P., Lathe R., Lecocq J. P. New versatile cloning and sequencing vectors based on bacteriophage M13. Gene. 1983 Dec;26(1):91–99. doi: 10.1016/0378-1119(83)90039-2. [DOI] [PubMed] [Google Scholar]
- Krause H. M., Higgins N. P. Positive and negative regulation of the Mu operator by Mu repressor and Escherichia coli integration host factor. J Biol Chem. 1986 Mar 15;261(8):3744–3752. [PubMed] [Google Scholar]
- Kwok T., Yang J., Pittard A. J., Wilson T. J., Davidson B. E. Analysis of an Escherichia coli mutant TyrR protein with impaired capacity for tyrosine-mediated repression, but still able to activate at sigma 70 promoters. Mol Microbiol. 1995 Aug;17(3):471–481. doi: 10.1111/j.1365-2958.1995.mmi_17030471.x. [DOI] [PubMed] [Google Scholar]
- Lawley B., Pittard A. J. Regulation of aroL expression by TyrR protein and Trp repressor in Escherichia coli K-12. J Bacteriol. 1994 Nov;176(22):6921–6930. doi: 10.1128/jb.176.22.6921-6930.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Livrelli V., Lee I. W., Summers A. O. In vivo DNA-protein interactions at the divergent mercury resistance (mer) promoters. I. Metalloregulatory protein MerR mutants. J Biol Chem. 1993 Feb 5;268(4):2623–2631. [PubMed] [Google Scholar]
- MONOD J., COHEN-BAZIRE G., COHN M. Sur la biosynthèse de la beta-galactosidase (lactase) chez Escherichia coli; la spécificité de l'induction. Biochim Biophys Acta. 1951 Nov;7(4):585–599. doi: 10.1016/0006-3002(51)90072-8. [DOI] [PubMed] [Google Scholar]
- Pittard A. J., Davidson B. E. TyrR protein of Escherichia coli and its role as repressor and activator. Mol Microbiol. 1991 Jul;5(7):1585–1592. doi: 10.1111/j.1365-2958.1991.tb01904.x. [DOI] [PubMed] [Google Scholar]
- Pittard J. The various strategies within the TyrR regulation of Escherichia coli to modulate gene expression. Genes Cells. 1996 Aug;1(8):717–725. doi: 10.1111/j.1365-2443.1996.tb00012.x. [DOI] [PubMed] [Google Scholar]
- Praszkier J., Wilson I. W., Pittard A. J. Mutations affecting translational coupling between the rep genes of an IncB miniplasmid. J Bacteriol. 1992 Apr;174(7):2376–2383. doi: 10.1128/jb.174.7.2376-2383.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ross W., Gosink K. K., Salomon J., Igarashi K., Zou C., Ishihama A., Severinov K., Gourse R. L. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science. 1993 Nov 26;262(5138):1407–1413. doi: 10.1126/science.8248780. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sarsero J. P., Pittard A. J. Molecular analysis of the TyrR protein-mediated activation of mtr gene expression in Escherichia coli K-12. J Bacteriol. 1991 Dec;173(23):7701–7704. doi: 10.1128/jb.173.23.7701-7704.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sarsero J. P., Wookey P. J., Pittard A. J. Regulation of expression of the Escherichia coli K-12 mtr gene by TyrR protein and Trp repressor. J Bacteriol. 1991 Jul;173(13):4133–4143. doi: 10.1128/jb.173.13.4133-4143.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang P., Yang J., Pittard A. J. Promoters and transcripts associated with the aroP gene of Escherichia coli. J Bacteriol. 1997 Jul;179(13):4206–4212. doi: 10.1128/jb.179.13.4206-4212.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wek R. C., Hatfield G. W. Transcriptional activation at adjacent operators in the divergent-overlapping ilvY and ilvC promoters of Escherichia coli. J Mol Biol. 1988 Oct 5;203(3):643–663. doi: 10.1016/0022-2836(88)90199-4. [DOI] [PubMed] [Google Scholar]
- Wilson T. J., Maroudas P., Howlett G. J., Davidson B. E. Ligand-induced self-association of the Escherichia coli regulatory protein TyrR. J Mol Biol. 1994 May 6;238(3):309–318. doi: 10.1006/jmbi.1994.1294. [DOI] [PubMed] [Google Scholar]
- Yang J., Camakaris H., Pittard A. J. Further genetic analysis of the activation function of the TyrR regulatory protein of Escherichia coli. J Bacteriol. 1996 Feb;178(4):1120–1125. doi: 10.1128/jb.178.4.1120-1125.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yang J., Camakaris H., Pittard A. J. In vitro transcriptional analysis of TyrR-mediated activation of the mtr and tyrP+3 promoters of Escherichia coli. J Bacteriol. 1996 Nov;178(21):6389–6393. doi: 10.1128/jb.178.21.6389-6393.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yang J., Ganesan S., Sarsero J., Pittard A. J. A genetic analysis of various functions of the TyrR protein of Escherichia coli. J Bacteriol. 1993 Mar;175(6):1767–1776. doi: 10.1128/jb.175.6.1767-1776.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]