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. 1997 Jul;179(13):4446–4450. doi: 10.1128/jb.179.13.4446-4450.1997

Cloning and characterization of the Streptomyces peucetius dnmZUV genes encoding three enzymes required for biosynthesis of the daunorubicin precursor thymidine diphospho-L-daunosamine.

S L Otten 1, M A Gallo 1, K Madduri 1, X Liu 1, C R Hutchinson 1
PMCID: PMC179277  PMID: 9209071

Abstract

Characterization of the dnmZ, dnmU, and dnmV genes from the daunorubicin-producer Streptomyces peucetius by DNA sequence analysis indicated that these genes encode a protein of unknown function plus a putative thymidine diphospho-4-keto-6-deoxyglucose-3(5)-epimerase and thymidine diphospho-4-ketodeoxyhexulose reductase, respectively. Inactivation of each of the three genes by gene disruption and replacement in the wild-type strain demonstrated that all of them are required for daunosamine biosynthesis.

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Selected References

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  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
  2. Amann E., Ochs B., Abel K. J. Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene. 1988 Sep 30;69(2):301–315. doi: 10.1016/0378-1119(88)90440-4. [DOI] [PubMed] [Google Scholar]
  3. Bierman M., Logan R., O'Brien K., Seno E. T., Rao R. N., Schoner B. E. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene. 1992 Jul 1;116(1):43–49. doi: 10.1016/0378-1119(92)90627-2. [DOI] [PubMed] [Google Scholar]
  4. Black P. N., DiRusso C. C. Molecular and biochemical analyses of fatty acid transport, metabolism, and gene regulation in Escherichia coli. Biochim Biophys Acta. 1994 Jan 3;1210(2):123–145. doi: 10.1016/0005-2760(94)90113-9. [DOI] [PubMed] [Google Scholar]
  5. Buendia A. M., Enenkel B., Köplin R., Niehaus K., Arnold W., Pühler A. The Rhizobium meliloti exoZl exoB fragment of megaplasmid 2: ExoB functions as a UDP-glucose 4-epimerase and ExoZ shows homology to NodX of Rhizobium leguminosarum biovar viciae strain TOM. Mol Microbiol. 1991 Jun;5(6):1519–1530. doi: 10.1111/j.1365-2958.1991.tb00799.x. [DOI] [PubMed] [Google Scholar]
  6. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gallo M. A., Ward J., Hutchinson C. R. The dnrM gene in Streptomyces peucetius contains a naturally occurring frameshift mutation that is suppressed by another locus outside of the daunorubicin-production gene cluster. Microbiology. 1996 Feb;142(Pt 2):269–275. doi: 10.1099/13500872-142-2-269. [DOI] [PubMed] [Google Scholar]
  8. Guilfoile P. G., Hutchinson C. R. A bacterial analog of the mdr gene of mammalian tumor cells is present in Streptomyces peucetius, the producer of daunorubicin and doxorubicin. Proc Natl Acad Sci U S A. 1991 Oct 1;88(19):8553–8557. doi: 10.1073/pnas.88.19.8553. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Hillemann D., Pühler A., Wohlleben W. Gene disruption and gene replacement in Streptomyces via single stranded DNA transformation of integration vectors. Nucleic Acids Res. 1991 Feb 25;19(4):727–731. doi: 10.1093/nar/19.4.727. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Krügel H., Schumann G., Hänel F., Fiedler G. Nucleotide sequence analysis of five putative Streptomyces griseus genes, one of which complements an early function in daunorubicin biosynthesis that is linked to a putative gene cluster involved in TDP-daunosamine formation. Mol Gen Genet. 1993 Oct;241(1-2):193–202. doi: 10.1007/BF00280217. [DOI] [PubMed] [Google Scholar]
  11. Landini P., Hajec L. I., Volkert M. R. Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB. J Bacteriol. 1994 Nov;176(21):6583–6589. doi: 10.1128/jb.176.21.6583-6589.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Liu H. W., Thorson J. S. Pathways and mechanisms in the biogenesis of novel deoxysugars by bacteria. Annu Rev Microbiol. 1994;48:223–256. doi: 10.1146/annurev.mi.48.100194.001255. [DOI] [PubMed] [Google Scholar]
  13. Macpherson D. F., Manning P. A., Morona R. Characterization of the dTDP-rhamnose biosynthetic genes encoded in the rfb locus of Shigella flexneri. Mol Microbiol. 1994 Jan;11(2):281–292. doi: 10.1111/j.1365-2958.1994.tb00308.x. [DOI] [PubMed] [Google Scholar]
  14. Madduri K., Hutchinson C. R. Functional characterization and transcriptional analysis of the dnrR1 locus, which controls daunorubicin biosynthesis in Streptomyces peucetius. J Bacteriol. 1995 Mar;177(5):1208–1215. doi: 10.1128/jb.177.5.1208-1215.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Matsubara Y., Indo Y., Naito E., Ozasa H., Glassberg R., Vockley J., Ikeda Y., Kraus J., Tanaka K. Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family. J Biol Chem. 1989 Sep 25;264(27):16321–16331. [PubMed] [Google Scholar]
  16. Otten S. L., Ferguson J., Hutchinson C. R. Regulation of daunorubicin production in Streptomyces peucetius by the dnrR2 locus. J Bacteriol. 1995 Mar;177(5):1216–1224. doi: 10.1128/jb.177.5.1216-1224.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Otten S. L., Liu X., Ferguson J., Hutchinson C. R. Cloning and characterization of the Streptomyces peucetius dnrQS genes encoding a daunosamine biosynthesis enzyme and a glycosyl transferase involved in daunorubicin biosynthesis. J Bacteriol. 1995 Nov;177(22):6688–6692. doi: 10.1128/jb.177.22.6688-6692.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Pissowotzki K., Mansouri K., Piepersberg W. Genetics of streptomycin production in Streptomyces griseus: molecular structure and putative function of genes strELMB2N. Mol Gen Genet. 1991 Dec;231(1):113–123. doi: 10.1007/BF00293829. [DOI] [PubMed] [Google Scholar]
  19. Scotti C., Hutchinson C. R. Enhanced antibiotic production by manipulation of the Streptomyces peucetius dnrH and dnmT genes involved in doxorubicin (adriamycin) biosynthesis. J Bacteriol. 1996 Dec;178(24):7316–7321. doi: 10.1128/jb.178.24.7316-7321.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Stutzman-Engwall K. J., Otten S. L., Hutchinson C. R. Regulation of secondary metabolism in Streptomyces spp. and overproduction of daunorubicin in Streptomyces peucetius. J Bacteriol. 1992 Jan;174(1):144–154. doi: 10.1128/jb.174.1.144-154.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Tanaka K., Indo Y. Evolution of the acyl-CoA dehydrogenase/oxidase superfamily. Prog Clin Biol Res. 1992;375:95–110. [PubMed] [Google Scholar]
  22. Thompson M. W., Strohl W. R., Floss H. G. Purification and characterization of TDP-D-glucose 4,6-dehydratase from anthracycline-producing streptomycetes. J Gen Microbiol. 1992 Apr;138(4):779–786. doi: 10.1099/00221287-138-4-779. [DOI] [PubMed] [Google Scholar]
  23. Thorson J. S., Lo S. F., Ploux O., He X., Liu H. W. Studies of the biosynthesis of 3,6-dideoxyhexoses: molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA. J Bacteriol. 1994 Sep;176(17):5483–5493. doi: 10.1128/jb.176.17.5483-5493.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Wierenga R. K., Terpstra P., Hol W. G. Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint. J Mol Biol. 1986 Jan 5;187(1):101–107. doi: 10.1016/0022-2836(86)90409-2. [DOI] [PubMed] [Google Scholar]
  25. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]

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