Abstract
The TOL plasmid pWW53 encodes a catabolic pathway for the metabolism of toluene. It bears an upper-pathway operon for the oxidation of toluene to benzoate and a copy of the gene that encodes regulatory protein XylR. For metabolism of the aromatic carboxylic acid, it bears two functional homologous meta-pathway operons, together with two functional copies of the xylS regulatory gene (xylS1 and xylS3). In cells growing in the absence of pathway substrates, no mRNA from upper- and meta-pathway operons were found; however, the xylR gene was expressed from two sigma70-dependent tandem promoters, and the xylS1 and the xylS3 genes were also expressed from their sigma70-dependent promoters, called Ps2 and Ps3, respectively. In cells grown in the presence of o-xylene, the XylR protein became active and stimulated transcription from the Pu promoter for the upper pathway. Expression from xylS1 but not from xylS3 was also stimulated by XylR; this was due to activation of transcription from the xylS1 Ps1 promoter, which is sigma54 dependent, and the lack of effect on expression from the Ps2 sigma70-dependent promoter. As a result of overexpression of the xylS1 gene, the XylS1 protein was overproduced and activated transcription from Pm1 and Pm2. In cells growing on benzoate, the upper-pathway operon was not expressed, but both meta operons were expressed. Given that XylS1 but not XylS3 recognized benzoate as an effector, stimulation of transcription was found to be mediated by XylS1. This was confirmed with cloned meta-pathway promoters and regulators. When 3-methylbenzoate was present in the medium, both meta operons were also expressed and stimulation of transcription was mediated by both XylS1 and XylS3, which both recognized 3-methylbenzoate as an effector.
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Selected References
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- Abril M. A., Michan C., Timmis K. N., Ramos J. L. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J Bacteriol. 1989 Dec;171(12):6782–6790. doi: 10.1128/jb.171.12.6782-6790.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Assinder S. J., De Marco P., Osborne D. J., Poh C. L., Shaw L. E., Winson M. K., Williams P. A. A comparison of the multiple alleles of xylS carried by TOL plasmids pWW53 and pDK1 and its implications for their evolutionary relationship. J Gen Microbiol. 1993 Mar;139(3):557–568. doi: 10.1099/00221287-139-3-557. [DOI] [PubMed] [Google Scholar]
- Assinder S. J., Williams P. A. The TOL plasmids: determinants of the catabolism of toluene and the xylenes. Adv Microb Physiol. 1990;31:1–69. doi: 10.1016/s0065-2911(08)60119-8. [DOI] [PubMed] [Google Scholar]
- Dente L., Cesareni G., Cortese R. pEMBL: a new family of single stranded plasmids. Nucleic Acids Res. 1983 Mar 25;11(6):1645–1655. doi: 10.1093/nar/11.6.1645. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Franklin F. C., Bagdasarian M., Bagdasarian M. M., Timmis K. N. Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc Natl Acad Sci U S A. 1981 Dec;78(12):7458–7462. doi: 10.1073/pnas.78.12.7458. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gallegos M. T., Marqués S., Ramos J. L. Expression of the TOL plasmid xylS gene in Pseudomonas putida occurs from a alpha 70-dependent promoter or from alpha 70- and alpha 54-dependent tandem promoters according to the compound used for growth. J Bacteriol. 1996 Apr;178(8):2356–2361. doi: 10.1128/jb.178.8.2356-2361.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Inouye S., Gomada M., Sangodkar U. M., Nakazawa A., Nakazawa T. Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid. J Mol Biol. 1990 Nov 20;216(2):251–260. doi: 10.1016/S0022-2836(05)80317-1. [DOI] [PubMed] [Google Scholar]
- Inouye S., Nakazawa A., Nakazawa T. Determination of the transcription initiation site and identification of the protein product of the regulatory gene xylR for xyl operons on the TOL plasmid. J Bacteriol. 1985 Sep;163(3):863–869. doi: 10.1128/jb.163.3.863-869.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Inouye S., Nakazawa A., Nakazawa T. Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product. Proc Natl Acad Sci U S A. 1987 Aug;84(15):5182–5186. doi: 10.1073/pnas.84.15.5182. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Inouye S., Nakazawa A., Nakazawa T. Molecular cloning of regulatory gene xylR and operator-promoter regions of the xylABC and xylDEGF operons of the TOL plasmid. J Bacteriol. 1983 Sep;155(3):1192–1199. doi: 10.1128/jb.155.3.1192-1199.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Keil H., Keil S., Pickup R. W., Williams P. A. Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53. J Bacteriol. 1985 Nov;164(2):887–895. doi: 10.1128/jb.164.2.887-895.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Keil H., Keil S., Williams P. A. Molecular analysis of regulatory and structural xyl genes of the TOL plasmid pWW53-4. J Gen Microbiol. 1987 May;133(5):1149–1158. doi: 10.1099/00221287-133-5-1149. [DOI] [PubMed] [Google Scholar]
- Keil H., Saint C. M., Williams P. A. Gene organization of the first catabolic operon of TOL plasmid pWW53: production of indigo by the xylA gene product. J Bacteriol. 1987 Feb;169(2):764–770. doi: 10.1128/jb.169.2.764-770.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Manoil C., Beckwith J. TnphoA: a transposon probe for protein export signals. Proc Natl Acad Sci U S A. 1985 Dec;82(23):8129–8133. doi: 10.1073/pnas.82.23.8129. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Marqués S., Holtel A., Timmis K. N., Ramos J. L. Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromatics. J Bacteriol. 1994 May;176(9):2517–2524. doi: 10.1128/jb.176.9.2517-2524.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Marqués S., Ramos J. L. Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol Microbiol. 1993 Sep;9(5):923–929. doi: 10.1111/j.1365-2958.1993.tb01222.x. [DOI] [PubMed] [Google Scholar]
- Osborne D. J., Pickup R. W., Williams P. A. The presence of two complete homologous meta pathway operons on TOL plasmid pWW53. J Gen Microbiol. 1988 Nov;134(11):2965–2975. doi: 10.1099/00221287-134-11-2965. [DOI] [PubMed] [Google Scholar]
- Ramos J. L., Mermod N., Timmis K. N. Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by Pseudomonas. Mol Microbiol. 1987 Nov;1(3):293–300. doi: 10.1111/j.1365-2958.1987.tb01935.x. [DOI] [PubMed] [Google Scholar]
- Ramos J. L., Michan C., Rojo F., Dwyer D., Timmis K. Signal-regulator interactions. Genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon. J Mol Biol. 1990 Jan 20;211(2):373–382. doi: 10.1016/0022-2836(90)90358-S. [DOI] [PubMed] [Google Scholar]
- Ramos J. L., Stolz A., Reineke W., Timmis K. N. Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria. Proc Natl Acad Sci U S A. 1986 Nov;83(22):8467–8471. doi: 10.1073/pnas.83.22.8467. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Worsey M. J., Williams P. A. Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid. J Bacteriol. 1975 Oct;124(1):7–13. doi: 10.1128/jb.124.1.7-13.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]