Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1997 Nov;179(21):6560–6565. doi: 10.1128/jb.179.21.6560-6565.1997

Effects of different carbon fluxes on G1 phase duration, cyclin expression, and reserve carbohydrate metabolism in Saccharomyces cerevisiae.

H H Silljé 1, E G ter Schure 1, A J Rommens 1, P G Huls 1, C L Woldringh 1, A J Verkleij 1, J Boonstra 1, C T Verrips 1
PMCID: PMC179579  PMID: 9352900

Abstract

By controlled addition of galactose to synchronized galactose-limited Saccharomyces cerevisiae cultures, the growth rate could be regulated while external conditions were kept constant. By using this method, the G1 phase duration was modulated and expression of cell cycle-regulated genes was investigated. The expression of the cyclin genes CLN1 and CLN2 was always induced just before bud emergence, indicating that this event marks the decision to pass Start. Thus, G1 phase elongation was not due to a slower accumulation of the CLN1 and CLN2 mRNA levels. Only small differences in CLN3 expression levels were observed. The maximal SWI4 expression preceded maximal CLN1 and CLN2 expression under all conditions, as expected for a transcriptional activator. But whereas SWI4 was expressed at about 10 to 20 min, before CLN1 and CLN2 expression at high growth rates, this time increased to about 300 min below a particular consumption rate at which the G1 phase strongly elongated. In the slower-growing cultures, also an increase in SWI6 expression was observed in the G1 phase. The increase in G1 phase duration below a particular consumption rate was accompanied by a strong increase in the reserve carbohydrate levels. These carbohydrates were metabolized again before bud emergence, indicating that below this consumption rate, a transient increase in ATP flux is required for progression through the cell cycle. Since Start occurred at different cell sizes under different growth conditions, it is not just a certain cell size that triggers passage through Start.

Full Text

The Full Text of this article is available as a PDF (609.1 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baroni M. D., Monti P., Alberghina L. Repression of growth-regulated G1 cyclin expression by cyclic AMP in budding yeast. Nature. 1994 Sep 22;371(6495):339–342. doi: 10.1038/371339a0. [DOI] [PubMed] [Google Scholar]
  2. Breeden L., Mikesell G. Three independent forms of regulation affect expression of HO, CLN1 and CLN2 during the cell cycle of Saccharomyces cerevisiae. Genetics. 1994 Dec;138(4):1015–1024. doi: 10.1093/genetics/138.4.1015. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Breeden L. Start-specific transcription in yeast. Curr Top Microbiol Immunol. 1996;208:95–127. doi: 10.1007/978-3-642-79910-5_5. [DOI] [PubMed] [Google Scholar]
  4. Carter B. L., Jagadish M. N. The relationship between cell size and cell division in the yeast Saccharomyces cerevisiae. Exp Cell Res. 1978 Mar 1;112(1):15–24. doi: 10.1016/0014-4827(78)90520-7. [DOI] [PubMed] [Google Scholar]
  5. Dirick L., Böhm T., Nasmyth K. Roles and regulation of Cln-Cdc28 kinases at the start of the cell cycle of Saccharomyces cerevisiae. EMBO J. 1995 Oct 2;14(19):4803–4813. doi: 10.1002/j.1460-2075.1995.tb00162.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Espinoza F. H., Ogas J., Herskowitz I., Morgan D. O. Cell cycle control by a complex of the cyclin HCS26 (PCL1) and the kinase PHO85. Science. 1994 Nov 25;266(5189):1388–1391. doi: 10.1126/science.7973730. [DOI] [PubMed] [Google Scholar]
  7. Foster R., Mikesell G. E., Breeden L. Multiple SWI6-dependent cis-acting elements control SWI4 transcription through the cell cycle. Mol Cell Biol. 1993 Jun;13(6):3792–3801. doi: 10.1128/mcb.13.6.3792. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Futcher B. Cyclins and the wiring of the yeast cell cycle. Yeast. 1996 Dec;12(16):1635–1646. doi: 10.1002/(SICI)1097-0061(199612)12:16%3C1635::AID-YEA83%3E3.0.CO;2-O. [DOI] [PubMed] [Google Scholar]
  9. Hadwiger J. A., Wittenberg C., Richardson H. E., de Barros Lopes M., Reed S. I. A family of cyclin homologs that control the G1 phase in yeast. Proc Natl Acad Sci U S A. 1989 Aug;86(16):6255–6259. doi: 10.1073/pnas.86.16.6255. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Harrington L. A., Andrews B. J. Binding to the yeast SwI4,6-dependent cell cycle box, CACGAAA, is cell cycle regulated in vivo. Nucleic Acids Res. 1996 Feb 15;24(4):558–565. doi: 10.1093/nar/24.4.558. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hartwell L. H., Culotti J., Pringle J. R., Reid B. J. Genetic control of the cell division cycle in yeast. Science. 1974 Jan 11;183(4120):46–51. doi: 10.1126/science.183.4120.46. [DOI] [PubMed] [Google Scholar]
  12. Huang D., Farkas I., Roach P. J. Pho85p, a cyclin-dependent protein kinase, and the Snf1p protein kinase act antagonistically to control glycogen accumulation in Saccharomyces cerevisiae. Mol Cell Biol. 1996 Aug;16(8):4357–4365. doi: 10.1128/mcb.16.8.4357. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Hubler L., Bradshaw-Rouse J., Heideman W. Connections between the Ras-cyclic AMP pathway and G1 cyclin expression in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol. 1993 Oct;13(10):6274–6282. doi: 10.1128/mcb.13.10.6274. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Koch C., Nasmyth K. Cell cycle regulated transcription in yeast. Curr Opin Cell Biol. 1994 Jun;6(3):451–459. doi: 10.1016/0955-0674(94)90039-6. [DOI] [PubMed] [Google Scholar]
  15. Koch C., Schleiffer A., Ammerer G., Nasmyth K. Switching transcription on and off during the yeast cell cycle: Cln/Cdc28 kinases activate bound transcription factor SBF (Swi4/Swi6) at start, whereas Clb/Cdc28 kinases displace it from the promoter in G2. Genes Dev. 1996 Jan 15;10(2):129–141. doi: 10.1101/gad.10.2.129. [DOI] [PubMed] [Google Scholar]
  16. Küenzi M. T., Fiechter A. Changes in carbohydrate composition and trehalase-activity during the budding cycle of Saccharomyces cerevisiae. Arch Mikrobiol. 1969;64(4):396–407. doi: 10.1007/BF00417021. [DOI] [PubMed] [Google Scholar]
  17. Lanker S., Valdivieso M. H., Wittenberg C. Rapid degradation of the G1 cyclin Cln2 induced by CDK-dependent phosphorylation. Science. 1996 Mar 15;271(5255):1597–1601. doi: 10.1126/science.271.5255.1597. [DOI] [PubMed] [Google Scholar]
  18. Lillie S. H., Pringle J. R. Reserve carbohydrate metabolism in Saccharomyces cerevisiae: responses to nutrient limitation. J Bacteriol. 1980 Sep;143(3):1384–1394. doi: 10.1128/jb.143.3.1384-1394.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Measday V., Moore L., Ogas J., Tyers M., Andrews B. The PCL2 (ORFD)-PHO85 cyclin-dependent kinase complex: a cell cycle regulator in yeast. Science. 1994 Nov 25;266(5189):1391–1395. doi: 10.1126/science.7973731. [DOI] [PubMed] [Google Scholar]
  20. Nash R., Tokiwa G., Anand S., Erickson K., Futcher A. B. The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog. EMBO J. 1988 Dec 20;7(13):4335–4346. doi: 10.1002/j.1460-2075.1988.tb03332.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Nasmyth K. At the heart of the budding yeast cell cycle. Trends Genet. 1996 Oct;12(10):405–412. doi: 10.1016/0168-9525(96)10041-x. [DOI] [PubMed] [Google Scholar]
  22. Nasmyth K. Control of the yeast cell cycle by the Cdc28 protein kinase. Curr Opin Cell Biol. 1993 Apr;5(2):166–179. doi: 10.1016/0955-0674(93)90099-c. [DOI] [PubMed] [Google Scholar]
  23. Nasmyth K., Dirick L. The role of SWI4 and SWI6 in the activity of G1 cyclins in yeast. Cell. 1991 Sep 6;66(5):995–1013. doi: 10.1016/0092-8674(91)90444-4. [DOI] [PubMed] [Google Scholar]
  24. Neves M. J., Jorge J. A., François J. M., Terenzi H. F. Effects of heat shock on the level of trehalose and glycogen, and on the induction of thermotolerance in Neurospora crassa. FEBS Lett. 1991 May 20;283(1):19–22. doi: 10.1016/0014-5793(91)80544-d. [DOI] [PubMed] [Google Scholar]
  25. Salama S. R., Hendricks K. B., Thorner J. G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover. Mol Cell Biol. 1994 Dec;14(12):7953–7966. doi: 10.1128/mcb.14.12.7953. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Sierkstra L. N., Nouwen N. P., Verbakel J. M., Verrips C. T. Regulation of glycolytic enzymes and the Crabtree effect in galactose-limited continuous cultures of Saccharomyces cerevisiae. Yeast. 1993 Jul;9(7):787–795. doi: 10.1002/yea.320090713. [DOI] [PubMed] [Google Scholar]
  27. Sierkstra L. N., Verbakel J. M., Verrips C. T. Analysis of transcription and translation of glycolytic enzymes in glucose-limited continuous cultures of Saccharomyces cerevisiae. J Gen Microbiol. 1992 Dec;138(12):2559–2566. doi: 10.1099/00221287-138-12-2559. [DOI] [PubMed] [Google Scholar]
  28. Stuart D., Wittenberg C. CLN3, not positive feedback, determines the timing of CLN2 transcription in cycling cells. Genes Dev. 1995 Nov 15;9(22):2780–2794. doi: 10.1101/gad.9.22.2780. [DOI] [PubMed] [Google Scholar]
  29. Thevelein J. M. Signal transduction in yeast. Yeast. 1994 Dec;10(13):1753–1790. doi: 10.1002/yea.320101308. [DOI] [PubMed] [Google Scholar]
  30. Timblin B. K., Tatchell K., Bergman L. W. Deletion of the gene encoding the cyclin-dependent protein kinase Pho85 alters glycogen metabolism in Saccharomyces cerevisiae. Genetics. 1996 May;143(1):57–66. doi: 10.1093/genetics/143.1.57. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Toda T., Uno I., Ishikawa T., Powers S., Kataoka T., Broek D., Cameron S., Broach J., Matsumoto K., Wigler M. In yeast, RAS proteins are controlling elements of adenylate cyclase. Cell. 1985 Jan;40(1):27–36. doi: 10.1016/0092-8674(85)90305-8. [DOI] [PubMed] [Google Scholar]
  32. Tokiwa G., Tyers M., Volpe T., Futcher B. Inhibition of G1 cyclin activity by the Ras/cAMP pathway in yeast. Nature. 1994 Sep 22;371(6495):342–345. doi: 10.1038/371342a0. [DOI] [PubMed] [Google Scholar]
  33. Tyers M., Tokiwa G., Futcher B. Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins. EMBO J. 1993 May;12(5):1955–1968. doi: 10.1002/j.1460-2075.1993.tb05845.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Wittenberg C., Sugimoto K., Reed S. I. G1-specific cyclins of S. cerevisiae: cell cycle periodicity, regulation by mating pheromone, and association with the p34CDC28 protein kinase. Cell. 1990 Jul 27;62(2):225–237. doi: 10.1016/0092-8674(90)90361-h. [DOI] [PubMed] [Google Scholar]
  35. Woldringh C. L., Huls P. G., Vischer N. O. Volume growth of daughter and parent cells during the cell cycle of Saccharomyces cerevisiae a/alpha as determined by image cytometry. J Bacteriol. 1993 May;175(10):3174–3181. doi: 10.1128/jb.175.10.3174-3181.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Yaglom J., Linskens M. H., Sadis S., Rubin D. M., Futcher B., Finley D. p34Cdc28-mediated control of Cln3 cyclin degradation. Mol Cell Biol. 1995 Feb;15(2):731–741. doi: 10.1128/mcb.15.2.731. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. ter Schure E. G., Silljé H. H., Verkleij A. J., Boonstra J., Verrips C. T. The concentration of ammonia regulates nitrogen metabolism in Saccharomyces cerevisiae. J Bacteriol. 1995 Nov;177(22):6672–6675. doi: 10.1128/jb.177.22.6672-6675.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES