Abstract
Escherichia coli K-12 can utilize D-allose, an all-cis hexose, as a sole carbon source. The operon responsible for D-allose metabolism was localized at 92.8 min of the E. coli linkage map. It consists of six genes, alsRBACEK, which are inducible by D-allose and are under the control of the repressor gene alsR. This operon is also subject to catabolite repression. Three genes, alsB, alsA, and alsC, appear to be necessary for transport of D-allose. D-Allose-binding protein, encoded by alsB, is a periplasmic protein that has an affinity for D-allose, with a Kd of 0.33 microM. As was found for other binding-protein-mediated ABC transporters, the allose transport system includes an ATP-binding component (AlsA) and a transmembrane protein (AlsC). It was found that AlsE (a putative D-allulose-6-phosphate 3-epimerase), but not AlsK (a putative D-allose kinase), is necessary for allose metabolism. During this study, we observed that the D-allose transporter is partially responsible for the low-affinity transport of D-ribose and that strain W3110, an E. coli prototroph, has a defect in the transport of D-allose mediated by the allose permease.
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- Aksamit R. R., Koshland D. E., Jr Identification of the ribose binding protein as the receptor for ribose chemotaxis in Salmonella typhimurium. Biochemistry. 1974 Oct 22;13(22):4473–4478. doi: 10.1021/bi00719a001. [DOI] [PubMed] [Google Scholar]
- Bachmann B. J. Pedigrees of some mutant strains of Escherichia coli K-12. Bacteriol Rev. 1972 Dec;36(4):525–557. doi: 10.1128/br.36.4.525-557.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Blattner F. R., Burland V., Plunkett G., 3rd, Sofia H. J., Daniels D. L. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res. 1993 Nov 25;21(23):5408–5417. doi: 10.1093/nar/21.23.5408. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Burland V., Plunkett G., 3rd, Sofia H. J., Daniels D. L., Blattner F. R. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Nucleic Acids Res. 1995 Jun 25;23(12):2105–2119. doi: 10.1093/nar/23.12.2105. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eym Y., Park Y., Park C. Genetically probing the regions of ribose-binding protein involved in permease interaction. Mol Microbiol. 1996 Aug;21(4):695–702. doi: 10.1046/j.1365-2958.1996.261389.x. [DOI] [PubMed] [Google Scholar]
- Frazer A. C., Curtiss R., 3rd Production, properties and utility of bacterial minicells. Curr Top Microbiol Immunol. 1975;69:1–84. doi: 10.1007/978-3-642-50112-8_1. [DOI] [PubMed] [Google Scholar]
- GIBBINS L. N., SIMPSON F. J. THE INCORPORATION OF D-ALLOSE INTO THE GLYCOLYTIC PATHWAY BY AEROBACTER AEROGENES. Can J Microbiol. 1964 Dec;10:829–836. doi: 10.1139/m64-108. [DOI] [PubMed] [Google Scholar]
- Gutnick D., Calvo J. M., Klopotowski T., Ames B. N. Compounds which serve as the sole source of carbon or nitrogen for Salmonella typhimurium LT-2. J Bacteriol. 1969 Oct;100(1):215–219. doi: 10.1128/jb.100.1.215-219.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hall M. N., Silhavy T. J. Genetic analysis of the ompB locus in Escherichia coli K-12. J Mol Biol. 1981 Sep 5;151(1):1–15. doi: 10.1016/0022-2836(81)90218-7. [DOI] [PubMed] [Google Scholar]
- Hove-Jensen B., Maigaard M. Escherichia coli rpiA gene encoding ribose phosphate isomerase A. J Bacteriol. 1993 Sep;175(17):5628–5635. doi: 10.1128/jb.175.17.5628-5635.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Iida A., Harayama S., Iino T., Hazelbauer G. L. Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12. J Bacteriol. 1984 May;158(2):674–682. doi: 10.1128/jb.158.2.674-682.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lopilato J. E., Garwin J. L., Emr S. D., Silhavy T. J., Beckwith J. R. D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport. J Bacteriol. 1984 May;158(2):665–673. doi: 10.1128/jb.158.2.665-673.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lyngstadaas A., Løbner-Olesen A., Boye E. Characterization of three genes in the dam-containing operon of Escherichia coli. Mol Gen Genet. 1995 Jun 10;247(5):546–554. doi: 10.1007/BF00290345. [DOI] [PubMed] [Google Scholar]
- Mortlock R. P. Catabolism of unnatural carbohydrates by micro-organisms. Adv Microb Physiol. 1976;13:1–53. doi: 10.1016/s0065-2911(08)60037-5. [DOI] [PubMed] [Google Scholar]
- Mowbray S. L., Cole L. B. 1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli. J Mol Biol. 1992 May 5;225(1):155–175. doi: 10.1016/0022-2836(92)91033-l. [DOI] [PubMed] [Google Scholar]
- Myers E. W., Miller W. Optimal alignments in linear space. Comput Appl Biosci. 1988 Mar;4(1):11–17. doi: 10.1093/bioinformatics/4.1.11. [DOI] [PubMed] [Google Scholar]
- Neu H. C., Heppel L. A. The release of enzymes from Escherichia coli by osmotic shock and during the formation of spheroplasts. J Biol Chem. 1965 Sep;240(9):3685–3692. [PubMed] [Google Scholar]
- Park C., Hazelbauer G. L. Mutations specifically affecting ligand interaction of the Trg chemosensory transducer. J Bacteriol. 1986 Jul;167(1):101–109. doi: 10.1128/jb.167.1.101-109.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Powell B. S., Rivas M. P., Court D. L., Nakamura Y., Turnbough C. L., Jr Rapid confirmation of single copy lambda prophage integration by PCR. Nucleic Acids Res. 1994 Dec 25;22(25):5765–5766. doi: 10.1093/nar/22.25.5765. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Simons R. W., Houman F., Kleckner N. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene. 1987;53(1):85–96. doi: 10.1016/0378-1119(87)90095-3. [DOI] [PubMed] [Google Scholar]
- Skinner A. J., Cooper R. A. Genetic studies on ribose 5-phosphate isomerase mutants of Escherichia coli K-12. J Bacteriol. 1974 Jun;118(3):1183–1185. doi: 10.1128/jb.118.3.1183-1185.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Song S., Park C. Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator. J Bacteriol. 1997 Nov;179(22):7025–7032. doi: 10.1128/jb.179.22.7025-7032.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sprenger G. A. Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12. Arch Microbiol. 1995 Nov;164(5):324–330. doi: 10.1007/BF02529978. [DOI] [PubMed] [Google Scholar]
- Spudich J. L., Koshland D. E., Jr Quantitation of the sensory response in bacterial chemotaxis. Proc Natl Acad Sci U S A. 1975 Feb;72(2):710–713. doi: 10.1073/pnas.72.2.710. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sørensen K. I., Hove-Jensen B. Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression. J Bacteriol. 1996 Feb;178(4):1003–1011. doi: 10.1128/jb.178.4.1003-1011.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ullrey D. B., Kalckar H. M. Search for cellular phosphorylation products of D-allose. Proc Natl Acad Sci U S A. 1991 Feb 15;88(4):1504–1505. doi: 10.1073/pnas.88.4.1504. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilmes-Riesenberg M. R., Wanner B. L. TnphoA and TnphoA' elements for making and switching fusions for study of transcription, translation, and cell surface localization. J Bacteriol. 1992 Jul;174(14):4558–4575. doi: 10.1128/jb.174.14.4558-4575.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]