Skip to main content
American Journal of Human Genetics logoLink to American Journal of Human Genetics
. 1995 Jun;56(6):1417–1430.

Preferential Localization of the Limb-Girdle Muscular Dystrophy Type 2A Gene in the Proximal Part of a 1-cM 15q15.1-q15.3 Interval

V Allamand, O Broux, I Richard, F Fougerousse, N Chiannilkulchai, N Bourg, L Brenguier, C Devaud, P Pasturaud, A Pereira de Souza, C Roudaut, J A Tischfield, P M Conneally, M Fardeau, D Cohen, C E Jackson, J S Beckmann
PMCID: PMC1801081  PMID: 7762565

Abstract

A gene for a recessive form of limb-girdle muscular dystrophy (LGMD2A) has been localized to chromosome 15. A physical map of the 7-cM candidate 15q15.1-q21.1 region has been constructed by means of a 10–12-Mb continuum of overlapping YAC clones. New microsatellite markers developed from these YACs were genotyped on large, consanguineous LGMD2A pedigrees from different origins. The identification of recombination events in these families allowed the restriction of the LGMD2A region to an estimated 1-cM interval, equivalent to ∼3–4 Mb. Linkage disequilibrium data on genetic isolates from the island of Réunion and from the Amish community suggest a preferential location of the LGMD2A gene in the proximal part of this region. Analysis of the interrelated pedigrees from Réunion revealed the existence of at least six different carrier haplotypes. This allelic heterogeneity is incompatible with the presumed existence of a founder effect and suggests that multiple LGMD2A mutations may segregate in this population.

Full text

PDF
1417

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Allamand V., Broux O., Bourg N., Richard I., Tischfield J. A., Hodes M. E., Conneally P. M., Fardeau M., Jackson C. E., Beckmann J. S. Genetic heterogeneity of autosomal recessive limb-girdle muscular dystrophy in a genetic isolate (Amish) and evidence for a new locus. Hum Mol Genet. 1995 Mar;4(3):459–463. doi: 10.1093/hmg/4.3.459. [DOI] [PubMed] [Google Scholar]
  2. Bach G., Moskowitz S. M., Tieu P. T., Matynia A., Neufeld E. F. Molecular analysis of Hurler syndrome in Druze and Muslim Arab patients in Israel: multiple allelic mutations of the IDUA gene in a small geographic area. Am J Hum Genet. 1993 Aug;53(2):330–338. [PMC free article] [PubMed] [Google Scholar]
  3. Bashir R., Strachan T., Keers S., Stephenson A., Mahjneh I., Marconi G., Nashef L., Bushby K. M. A gene for autosomal recessive limb-girdle muscular dystrophy maps to chromosome 2p. Hum Mol Genet. 1994 Mar;3(3):455–457. doi: 10.1093/hmg/3.3.455. [DOI] [PubMed] [Google Scholar]
  4. Beckmann J. S., Richard I., Hillaire D., Broux O., Antignac C., Bois E., Cann H., Cottingham R. W., Jr, Feingold N., Feingold J. A gene for limb-girdle muscular dystrophy maps to chromosome 15 by linkage. C R Acad Sci III. 1991;312(4):141–148. [PubMed] [Google Scholar]
  5. Beckmann J. S., Tomfohrde J., Barnes R. I., Williams M., Broux O., Richard I., Weissenbach J., Bowcock A. M. A linkage map of human chromosome 15 with an average resolution of 2 cM and containing 55 polymorphic microsatellites. Hum Mol Genet. 1993 Dec;2(12):2019–2030. doi: 10.1093/hmg/2.12.2019. [DOI] [PubMed] [Google Scholar]
  6. Ben Hamida C., Doerflinger N., Belal S., Linder C., Reutenauer L., Dib C., Gyapay G., Vignal A., Le Paslier D., Cohen D. Localization of Friedreich ataxia phenotype with selective vitamin E deficiency to chromosome 8q by homozygosity mapping. Nat Genet. 1993 Oct;5(2):195–200. doi: 10.1038/ng1093-195. [DOI] [PubMed] [Google Scholar]
  7. Bowcock A. M., Tomfohrde J., Weissenbach J., Bonne-Tamir B., St George-Hyslop P., Giagheddu M., Cavalli-Sforza L. L., Farrer L. A. Refining the position of Wilson disease by linkage disequilibrium with polymorphic microsatellites. Am J Hum Genet. 1994 Jan;54(1):79–87. [PMC free article] [PubMed] [Google Scholar]
  8. Chiannilkulchai N., Pasturaud P., Richard I., Auffray C., Beckmann J. S. A primary expression map of the chromosome 15q15 region containing the recessive form of limb-girdle muscular dystrophy (LGMD2A) gene. Hum Mol Genet. 1995 Apr;4(4):717–725. doi: 10.1093/hmg/4.4.717. [DOI] [PubMed] [Google Scholar]
  9. Emery A. E. Population frequencies of inherited neuromuscular diseases--a world survey. Neuromuscul Disord. 1991;1(1):19–29. doi: 10.1016/0960-8966(91)90039-u. [DOI] [PubMed] [Google Scholar]
  10. Fougerousse F., Broux O., Richard I., Allamand V., de Souza A. P., Bourg N., Brenguier L., Devaud C., Pasturaud P., Roudaut C. Mapping of a chromosome 15 region involved in limb girdle muscular dystrophy. Hum Mol Genet. 1994 Feb;3(2):285–293. doi: 10.1093/hmg/3.2.285. [DOI] [PubMed] [Google Scholar]
  11. Fougerousse F., Richard I., Broux O., Cohen D., Beckmann J. S. Mapping of two chromosome 15 microsatellites. Genomics. 1992 Jul;13(3):903–904. doi: 10.1016/0888-7543(92)90184-t. [DOI] [PubMed] [Google Scholar]
  12. HAMMOND D. T., JACKSON C. E. Consanguinity in a midwestern United States isolate. Am J Hum Genet. 1958 Mar;10(1):61–63. [PMC free article] [PubMed] [Google Scholar]
  13. Heinisch U., Zlotogora J., Kafert S., Gieselmann V. Multiple mutations are responsible for the high frequency of metachromatic leukodystrophy in a small geographic area. Am J Hum Genet. 1995 Jan;56(1):51–57. [PMC free article] [PubMed] [Google Scholar]
  14. Hästbacka J., de la Chapelle A., Kaitila I., Sistonen P., Weaver A., Lander E. Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland. Nat Genet. 1992 Nov;2(3):204–211. doi: 10.1038/ng1192-204. [DOI] [PubMed] [Google Scholar]
  15. Hästbacka J., de la Chapelle A., Mahtani M. M., Clines G., Reeve-Daly M. P., Daly M., Hamilton B. A., Kusumi K., Trivedi B., Weaver A. The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by fine-structure linkage disequilibrium mapping. Cell. 1994 Sep 23;78(6):1073–1087. doi: 10.1016/0092-8674(94)90281-x. [DOI] [PubMed] [Google Scholar]
  16. Jackson C. E., Strehler D. A. Limb-girdle muscular dystrophy: clinical manifestations and detection of preclinical disease. Pediatrics. 1968 Feb;41(2):495–502. [PubMed] [Google Scholar]
  17. Jorde L. B., Watkins W. S., Carlson M., Groden J., Albertsen H., Thliveris A., Leppert M. Linkage disequilibrium predicts physical distance in the adenomatous polyposis coli region. Am J Hum Genet. 1994 May;54(5):884–898. [PMC free article] [PubMed] [Google Scholar]
  18. Kerem B., Rommens J. M., Buchanan J. A., Markiewicz D., Cox T. K., Chakravarti A., Buchwald M., Tsui L. C. Identification of the cystic fibrosis gene: genetic analysis. Science. 1989 Sep 8;245(4922):1073–1080. doi: 10.1126/science.2570460. [DOI] [PubMed] [Google Scholar]
  19. Lander E. S., Botstein D. Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children. Science. 1987 Jun 19;236(4808):1567–1570. doi: 10.1126/science.2884728. [DOI] [PubMed] [Google Scholar]
  20. Lathrop G. M., Lalouel J. M., Julier C., Ott J. Multilocus linkage analysis in humans: detection of linkage and estimation of recombination. Am J Hum Genet. 1985 May;37(3):482–498. [PMC free article] [PubMed] [Google Scholar]
  21. Lehesjoki A. E., Koskiniemi M., Norio R., Tirrito S., Sistonen P., Lander E., de la Chapelle A. Localization of the EPM1 gene for progressive myoclonus epilepsy on chromosome 21: linkage disequilibrium allows high resolution mapping. Hum Mol Genet. 1993 Aug;2(8):1229–1234. doi: 10.1093/hmg/2.8.1229. [DOI] [PubMed] [Google Scholar]
  22. Litt M., Jorde L. B. Linkage disequilibria between pairs of loci within a highly polymorphic region of chromosome 2Q. Am J Hum Genet. 1986 Aug;39(2):166–178. [PMC free article] [PubMed] [Google Scholar]
  23. Murray J. C., Buetow K. H., Weber J. L., Ludwigsen S., Scherpbier-Heddema T., Manion F., Quillen J., Sheffield V. C., Sunden S., Duyk G. M. A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC). Science. 1994 Sep 30;265(5181):2049–2054. doi: 10.1126/science.8091227. [DOI] [PubMed] [Google Scholar]
  24. Passos-Bueno M. R., Richard I., Vainzof M., Fougerousse F., Weissenbach J., Broux O., Cohen D., Akiyama J., Marie S. K., Carvalho A. A. Evidence of genetic heterogeneity in the autosomal recessive adult forms of limb-girdle muscular dystrophy following linkage analysis with 15q probes in Brazilian families. J Med Genet. 1993 May;30(5):385–387. doi: 10.1136/jmg.30.5.385. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Passos-Bueno M. R., Vainzof M., Pavanello R. de C., Pavanello-Filho I., Lima M. A., Zatz M. Limb-girdle syndrome: a genetic study of 22 large Brazilian families. Comparison with X-linked Duchenne and Becker dystrophies. J Neurol Sci. 1991 May;103(1):65–75. doi: 10.1016/0022-510x(91)90286-g. [DOI] [PubMed] [Google Scholar]
  26. Pollak M. R., Chou Y. H., Cerda J. J., Steinmann B., La Du B. N., Seidman J. G., Seidman C. E. Homozygosity mapping of the gene for alkaptonuria to chromosome 3q2. Nat Genet. 1993 Oct;5(2):201–204. doi: 10.1038/ng1093-201. [DOI] [PubMed] [Google Scholar]
  27. Puffenberger E. G., Kauffman E. R., Bolk S., Matise T. C., Washington S. S., Angrist M., Weissenbach J., Garver K. L., Mascari M., Ladda R. Identity-by-descent and association mapping of a recessive gene for Hirschsprung disease on human chromosome 13q22. Hum Mol Genet. 1994 Aug;3(8):1217–1225. doi: 10.1093/hmg/3.8.1217. [DOI] [PubMed] [Google Scholar]
  28. Richard I., Broux O., Allamand V., Fougerousse F., Chiannilkulchai N., Bourg N., Brenguier L., Devaud C., Pasturaud P., Roudaut C. Mutations in the proteolytic enzyme calpain 3 cause limb-girdle muscular dystrophy type 2A. Cell. 1995 Apr 7;81(1):27–40. doi: 10.1016/0092-8674(95)90368-2. [DOI] [PubMed] [Google Scholar]
  29. Rodius F., Duclos F., Wrogemann K., Le Paslier D., Ougen P., Billault A., Belal S., Musenger C., Brice A., Dürr A. Recombinations in individuals homozygous by descent localize the Friedreich ataxia locus in a cloned 450-kb interval. Am J Hum Genet. 1994 Jun;54(6):1050–1059. [PMC free article] [PubMed] [Google Scholar]
  30. Sirugo G., Keats B., Fujita R., Duclos F., Purohit K., Koenig M., Mandel J. L. Friedreich ataxia in Louisiana Acadians: demonstration of a founder effect by analysis of microsatellite-generated extended haplotypes. Am J Hum Genet. 1992 Mar;50(3):559–566. [PMC free article] [PubMed] [Google Scholar]
  31. Snarey A., Thomas S., Schneider M. C., Pound S. E., Barton N., Wright A. F., Somlo S., Germino G. G., Harris P. C., Reeders S. T. Linkage disequilibrium in the region of the autosomal dominant polycystic kidney disease gene (PKD1). Am J Hum Genet. 1994 Aug;55(2):365–371. [PMC free article] [PubMed] [Google Scholar]
  32. Weissenbach J., Gyapay G., Dib C., Vignal A., Morissette J., Millasseau P., Vaysseix G., Lathrop M. A second-generation linkage map of the human genome. Nature. 1992 Oct 29;359(6398):794–801. doi: 10.1038/359794a0. [DOI] [PubMed] [Google Scholar]
  33. Young K., Foroud T., Williams P., Jackson C. E., Beckmann J. S., Cohen D., Conneally P. M., Tischfield J., Hodes M. E. Confirmation of linkage of limb-girdle muscular dystrophy, type 2, to chromosome 15. Genomics. 1992 Aug;13(4):1370–1371. doi: 10.1016/0888-7543(92)90074-3. [DOI] [PubMed] [Google Scholar]
  34. de Souza A. P., Allamand V., Richard I., Brenguier L., Chumakov I., Cohen D., Beckmann J. S. Targeted development of microsatellite markers from inter-Alu amplification of YAC clones. Genomics. 1994 Jan 15;19(2):391–393. doi: 10.1006/geno.1994.1079. [DOI] [PubMed] [Google Scholar]

Articles from American Journal of Human Genetics are provided here courtesy of American Society of Human Genetics

RESOURCES