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. 1993 Sep;59(9):3141–3144. doi: 10.1128/aem.59.9.3141-3144.1993

Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field gel electrophoresis.

K D Harsono 1, C W Kaspar 1, J B Luchansky 1
PMCID: PMC182421  PMID: 8215383

Abstract

Genomic DNAs of Escherichia coli O157:H7 strains isolated from patients and food samples were analyzed by pulsed-field gel electrophoresis. The rare-cutting endonucleases SfiI and XbaI generated 6 and 10 distinct genomic profiles, respectively, for the 22 strains analyzed, indicating that this technique may find application for epidemiologic studies. Summation of XbaI fragments from five E. coli O157:H7 strains estimated the genomic length at ca. 4.7 Mb.

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Selected References

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  1. Arbeit R. D., Arthur M., Dunn R., Kim C., Selander R. K., Goldstein R. Resolution of recent evolutionary divergence among Escherichia coli from related lineages: the application of pulsed field electrophoresis to molecular epidemiology. J Infect Dis. 1990 Feb;161(2):230–235. doi: 10.1093/infdis/161.2.230. [DOI] [PubMed] [Google Scholar]
  2. Baloga A. O., Harlander S. K. Comparison of methods for discrimination between strains of Listeria monocytogenes from epidemiological surveys. Appl Environ Microbiol. 1991 Aug;57(8):2324–2331. doi: 10.1128/aem.57.8.2324-2331.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Böhm H., Karch H. DNA fingerprinting of Escherichia coli O157:H7 strains by pulsed-field gel electrophoresis. J Clin Microbiol. 1992 Aug;30(8):2169–2172. doi: 10.1128/jcm.30.8.2169-2172.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Canard B., Cole S. T. Genome organization of the anaerobic pathogen Clostridium perfringens. Proc Natl Acad Sci U S A. 1989 Sep;86(17):6676–6680. doi: 10.1073/pnas.86.17.6676. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Daniels D. L. The complete AvrII restriction map of the Escherichia coli genome and comparisons of several laboratory strains. Nucleic Acids Res. 1990 May 11;18(9):2649–2651. doi: 10.1093/nar/18.9.2649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Doyle M. P. Escherichia coli O157:H7 and its significance in foods. Int J Food Microbiol. 1991 Apr;12(4):289–301. doi: 10.1016/0168-1605(91)90143-d. [DOI] [PubMed] [Google Scholar]
  7. Gordillo M. E., Reeve G. R., Pappas J., Mathewson J. J., DuPont H. L., Murray B. E. Molecular characterization of strains of enteroinvasive Escherichia coli O143, including isolates from a large outbreak in Houston, Texas. J Clin Microbiol. 1992 Apr;30(4):889–893. doi: 10.1128/jcm.30.4.889-893.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Griffin P. M., Tauxe R. V. The epidemiology of infections caused by Escherichia coli O157:H7, other enterohemorrhagic E. coli, and the associated hemolytic uremic syndrome. Epidemiol Rev. 1991;13:60–98. doi: 10.1093/oxfordjournals.epirev.a036079. [DOI] [PubMed] [Google Scholar]
  9. Howard P. J., Harsono K. D., Luchansky J. B. Differentiation of Listeria monocytogenes, Listeria innocua, Listeria ivanovii, and Listeria seeligeri by pulsed-field gel electrophoresis. Appl Environ Microbiol. 1992 Feb;58(2):709–712. doi: 10.1128/aem.58.2.709-712.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Johnson J. R., Moseley S. L., Coyle M. B., Stamm W. E. Success of DNA fingerprinting after failure of biotyping, antimicrobial susceptibility testing, and plasmid analysis to reveal clonality of multiple blood and urine isolates from a patient with Escherichia coli urosepsis. Diagn Microbiol Infect Dis. 1992 Jul;15(5):399–405. doi: 10.1016/0732-8893(92)90080-d. [DOI] [PubMed] [Google Scholar]
  11. Luchansky J. B., Glass K. A., Harsono K. D., Degnan A. J., Faith N. G., Cauvin B., Baccus-Taylor G., Arihara K., Bater B., Maurer A. J. Genomic analysis of Pediococcus starter cultures used to control Listeria monocytogenes in turkey summer sausage. Appl Environ Microbiol. 1992 Sep;58(9):3053–3059. doi: 10.1128/aem.58.9.3053-3059.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Ostroff S. M., Tarr P. I., Neill M. A., Lewis J. H., Hargrett-Bean N., Kobayashi J. M. Toxin genotypes and plasmid profiles as determinants of systemic sequelae in Escherichia coli O157:H7 infections. J Infect Dis. 1989 Dec;160(6):994–998. doi: 10.1093/infdis/160.6.994. [DOI] [PubMed] [Google Scholar]
  13. Ott M., Bender L., Blum G., Schmittroth M., Achtman M., Tschäpe H., Hacker J. Virulence patterns and long-range genetic mapping of extraintestinal Escherichia coli K1, K5, and K100 isolates: use of pulsed-field gel electrophoresis. Infect Immun. 1991 Aug;59(8):2664–2672. doi: 10.1128/iai.59.8.2664-2672.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Padhye N. V., Doyle M. P. Rapid procedure for detecting enterohemorrhagic Escherichia coli O157:H7 in food. Appl Environ Microbiol. 1991 Sep;57(9):2693–2698. doi: 10.1128/aem.57.9.2693-2698.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Perkins J. D., Heath J. D., Sharma B. R., Weinstock G. M. SfiI genomic cleavage map of Escherichia coli K-12 strain MG1655. Nucleic Acids Res. 1992 Mar 11;20(5):1129–1137. doi: 10.1093/nar/20.5.1129. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Prevost G., Jaulhac B., Piemont Y. DNA fingerprinting by pulsed-field gel electrophoresis is more effective than ribotyping in distinguishing among methicillin-resistant Staphylococcus aureus isolates. J Clin Microbiol. 1992 Apr;30(4):967–973. doi: 10.1128/jcm.30.4.967-973.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Ratnam S., March S. B., Ahmed R., Bezanson G. S., Kasatiya S. Characterization of Escherichia coli serotype O157:H7. J Clin Microbiol. 1988 Oct;26(10):2006–2012. doi: 10.1128/jcm.26.10.2006-2012.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Scherer S., Stevens D. A. A Candida albicans dispersed, repeated gene family and its epidemiologic applications. Proc Natl Acad Sci U S A. 1988 Mar;85(5):1452–1456. doi: 10.1073/pnas.85.5.1452. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Smith C. L., Econome J. G., Schutt A., Klco S., Cantor C. R. A physical map of the Escherichia coli K12 genome. Science. 1987 Jun 12;236(4807):1448–1453. doi: 10.1126/science.3296194. [DOI] [PubMed] [Google Scholar]
  20. Szabo E. A., Desmarchelier P. M. A comparative study of clinical and food isolates of Listeria monocytogenes and related species. Epidemiol Infect. 1990 Oct;105(2):245–254. doi: 10.1017/s0950268800047853. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Tanskanen E. I., Tulloch D. L., Hillier A. J., Davidson B. E. Pulsed-Field Gel Electrophoresis of SmaI Digests of Lactococcal Genomic DNA, a Novel Method of Strain Identification. Appl Environ Microbiol. 1990 Oct;56(10):3105–3111. doi: 10.1128/aem.56.10.3105-3111.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Whittam T. S., Wachsmuth I. K., Wilson R. A. Genetic evidence of clonal descent of Escherichia coli O157:H7 associated with hemorrhagic colitis and hemolytic uremic syndrome. J Infect Dis. 1988 Jun;157(6):1124–1133. doi: 10.1093/infdis/157.6.1124. [DOI] [PubMed] [Google Scholar]

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