Skip to main content
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1991 Oct;57(10):2963–2968. doi: 10.1128/aem.57.10.2963-2968.1991

Concentration and detection of hepatitis A virus and rotavirus from shellfish by hybridization tests.

Y J Zhou 1, M K Estes 1, X Jiang 1, T G Metcalf 1
PMCID: PMC183905  PMID: 1660697

Abstract

A modified polyethylene glycol precipitation method for concentration of virus followed by a new method to recover nucleic acid was used to detect hepatitis A virus (HAV) and rotavirus (SA11) in shellfish (oysters and hard-shell clams) by hybridization tests. Infectious virus, seeded into relatively large quantities of shellfish, was recovered consistently, with greater than 90% efficiency as measured by either in situ hybridization (HAV) or plaque assay (rotavirus SA11). Viral nucleic acid for dot blot hybridization assays was extracted and purified from virus-containing polyethylene glycol concentrates. Separation of shellfish polysaccharides from nucleic acid was necessary before viral RNA could be detected by dot blot hybridization. Removal of shellfish polysaccharides was accomplished by using the cationic detergent cetyltrimethylammonium bromide (CTAB). Use of CTAB reduced background interference with hybridization signals, which resulted in increased hybridization test sensitivity. After polysaccharide removal, dot blot hybridization assays could detect approximately 10(6) physical particles (corresponding to approximately 10(3) infectious particles) of HAV and 10(4) PFU of SA11 rotavirus present in 20-g samples of oyster and clam meats. These studies show continuing promise for the development of uniform methods to directly detect human viral pathogens in different types of shellfish. However, practical applications of such methods to detect noncultivatable human viral pathogens of public health interest will require additional improvements in test sensitivity.

Full text

PDF
2963

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Appleton H. Small round viruses: classification and role in food-borne infections. Ciba Found Symp. 1987;128:108–125. doi: 10.1002/9780470513460.ch7. [DOI] [PubMed] [Google Scholar]
  2. Baess I. Isolation and purification of deoxyribonucleic acid from mycobacteria. Acta Pathol Microbiol Scand B Microbiol Immunol. 1974 Dec;82(6):780–784. doi: 10.1111/j.1699-0463.1974.tb02375.x. [DOI] [PubMed] [Google Scholar]
  3. Bisson J. W., Cabelli V. J. Membrane filter enumeration method for Clostridium perfringens. Appl Environ Microbiol. 1979 Jan;37(1):55–66. doi: 10.1128/aem.37.1.55-66.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979 Nov 27;18(24):5294–5299. doi: 10.1021/bi00591a005. [DOI] [PubMed] [Google Scholar]
  5. DOUGHERTY W. J., ALTMAN R. Viral hepatitis in New Jersey 1960-1961. Am J Med. 1962 May;32:704–716. doi: 10.1016/0002-9343(62)90160-2. [DOI] [PubMed] [Google Scholar]
  6. Darby G. K., Jones A. S., Kennedy J. F., Walker R. T. Isolation and analysis of the nucleic acids and polysaccharides from Clostridium welchii. J Bacteriol. 1970 Jul;103(1):159–165. doi: 10.1128/jb.103.1.159-165.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Del Sal G., Manfioletti G., Schneider C. The CTAB-DNA precipitation method: a common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing. Biotechniques. 1989 May;7(5):514–520. [PubMed] [Google Scholar]
  8. Estes M. K., Graham D. Y., Gerba C. P., Smith E. M. Simian rotavirus SA11 replication in cell cultures. J Virol. 1979 Sep;31(3):810–815. doi: 10.1128/jvi.31.3.810-815.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Estes M. K., Mason B. B., Crawford S., Cohen J. Cloning and nucleotide sequence of the simian rotavirus gene 6 that codes for the major inner capsid protein. Nucleic Acids Res. 1984 Feb 24;12(4):1875–1887. doi: 10.1093/nar/12.4.1875. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Gill O. N., Cubitt W. D., McSwiggan D. A., Watney B. M., Bartlett C. L. Epidemic of gastroenteritis caused by oysters contaminated with small round structured viruses. Br Med J (Clin Res Ed) 1983 Nov 19;287(6404):1532–1534. doi: 10.1136/bmj.287.6404.1532. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Gunn R. A., Janowski H. T., Lieb S., Prather E. C., Greenberg H. B. Norwalk virus gastroenteritis following raw oyster consumption. Am J Epidemiol. 1982 Mar;115(3):348–351. doi: 10.1093/oxfordjournals.aje.a113311. [DOI] [PubMed] [Google Scholar]
  12. Hill E. B., Wayne L. G., Gross W. M. Purification of mycobacterial deoxyribonucleic acid. J Bacteriol. 1972 Dec;112(3):1033–1039. doi: 10.1128/jb.112.3.1033-1039.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Jiang X., Estes M. K., Metcalf T. G. Detection of hepatitis A virus by hybridization with single-stranded RNA probes. Appl Environ Microbiol. 1987 Oct;53(10):2487–2495. doi: 10.1128/aem.53.10.2487-2495.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Jiang X., Estes M. K., Metcalf T. G., Melnick J. L. Detection of hepatitis A virus in seeded estuarine samples by hybridization with cDNA probes. Appl Environ Microbiol. 1986 Oct;52(4):711–717. doi: 10.1128/aem.52.4.711-717.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lewis G. D., Metcalf T. G. Polyethylene glycol precipitation for recovery of pathogenic viruses, including hepatitis A virus and human rotavirus, from oyster, water, and sediment samples. Appl Environ Microbiol. 1988 Aug;54(8):1983–1988. doi: 10.1128/aem.54.8.1983-1988.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. MASON J. O., McLEAN W. R. Infectious hepatitis traced to the consumption of raw oysters. An epidemiologic study. Am J Hyg. 1962 Jan;75:90–111. doi: 10.1093/oxfordjournals.aje.a120238. [DOI] [PubMed] [Google Scholar]
  17. Melnick J. L., Safferman R., Rao V. C., Goyal S., Berg G., Dahling D. R., Wright B. A., Akin E., Stetler R., Sorber C. Round robin investigation of methods for the recovery of poliovirus from drinking water. Appl Environ Microbiol. 1984 Jan;47(1):144–150. doi: 10.1128/aem.47.1.144-150.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Metcalf T. G., Melnick J. L. Simple apparatus for collecting estuarine sediments and suspended solids to detect solids-associated virus. Appl Environ Microbiol. 1983 Jan;45(1):323–327. doi: 10.1128/aem.45.1.323-327.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Metcalf T. G., Wallis C., Melnick J. L. Environmental factors influencing isolation of enteroviruses from polluted surface waters. Appl Microbiol. 1974 May;27(5):920–926. doi: 10.1128/am.27.5.920-926.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Murphy A. M., Grohmann G. S., Christopher P. J., Lopez W. A., Davey G. R., Millsom R. H. An Australia-wide outbreak of gastroenteritis from oysters caused by Norwalk virus. Med J Aust. 1979 Oct 6;2(7):329–333. doi: 10.5694/j.1326-5377.1979.tb104133.x. [DOI] [PubMed] [Google Scholar]
  21. Nasser A. M., Metcalf T. G. Production of cytopathology in FRhK-4 cells by BS-C-1-passaged hepatitis A virus. Appl Environ Microbiol. 1987 Dec;53(12):2967–2971. doi: 10.1128/aem.53.12.2967-2971.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Portnoy B. L., Mackowiak P. A., Caraway C. T., Walker J. A., McKinley T. W., Klein C. A., Jr Oyster-associated hepatitis. Failure of shellfish certification programs to prevent outbreaks. JAMA. 1975 Sep 8;233(10):1065–1068. doi: 10.1001/jama.233.10.1065. [DOI] [PubMed] [Google Scholar]
  23. Rao V. C., Metcalf T. G., Melnick J. L. Human viruses in sediments, sludges, and soils. Bull World Health Organ. 1986;64(1):1–13. [PMC free article] [PubMed] [Google Scholar]
  24. Rao V. C., Seidel K. M., Goyal S. M., Metcalf T. G., Melnick J. L. Isolation of enteroviruses from water, suspended solids, and sediments from Galveston Bay: survival of poliovirus and rotavirus adsorbed to sediments. Appl Environ Microbiol. 1984 Aug;48(2):404–409. doi: 10.1128/aem.48.2.404-409.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Smith E. M., Estes M. K., Graham D. Y., Gerba C. P. A plaque assay for the simian rotavirus SAII. J Gen Virol. 1979 Jun;43(3):513–519. doi: 10.1099/0022-1317-43-3-513. [DOI] [PubMed] [Google Scholar]
  26. Wanke C. A., Guerrant R. L. Viral hepatitis and gastroenteritis transmitted by shellfish and water. Infect Dis Clin North Am. 1987 Sep;1(3):649–664. [PubMed] [Google Scholar]
  27. Xi J. N., Estes M. K., Metcalf T. G. In situ hybridization for quantitative assay of infectious hepatitis A virus. J Clin Microbiol. 1989 May;27(5):874–879. doi: 10.1128/jcm.27.5.874-879.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES