Abstract
Transcription termination by vaccinia virus RNA polymerase during synthesis of early mRNAs requires a virus-encoded termination factor (VTF). VTF is but one of many activities associated with the vaccinia virus mRNA capping enzyme, a heterodimer of 95- and 33-kDa subunits encoded by the D1 and D12 genes, respectively. Although the three catalytic domains involved in cap formation have been assigned to individual subunits or portions thereof, the structural requirements for VTF activity are unknown. We now report that both full-length subunits are required for transcription termination. The 844-amino acid D1 subunit by itself, which is fully active in triphosphatase and guanylyltransferase functions, has no demonstrable VTF activity in vitro. Neither does the D12 subunit by itself. The heterodimeric methyltransferase domain of D1 (residues 498 to 844) and D12 subunits also has no VTF activity. VTF is not affected by a K-to-M mutation of the guanylyltransferase active site at position 260 (K260M) that abolishes enzyme-GMP complex formation or by a H682A/Y683A double mutation of the D1 subunit, which abrogates methyltransferase activity. Thus, the structural requirements for termination are distinct from those for nucleotidyl transfer and methyl transfer.
Full Text
The Full Text of this article is available as a PDF (271.2 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Broyles S. S., Yuen L., Shuman S., Moss B. Purification of a factor required for transcription of vaccinia virus early genes. J Biol Chem. 1988 Aug 5;263(22):10754–10760. [PubMed] [Google Scholar]
- Cong P., Shuman S. Covalent catalysis in nucleotidyl transfer. A KTDG motif essential for enzyme-GMP complex formation by mRNA capping enzyme is conserved at the active sites of RNA and DNA ligases. J Biol Chem. 1993 Apr 5;268(10):7256–7260. [PubMed] [Google Scholar]
- Cong P., Shuman S. Methyltransferase and subunit association domains of vaccinia virus mRNA capping enzyme. J Biol Chem. 1992 Aug 15;267(23):16424–16429. [PubMed] [Google Scholar]
- Deng L., Shuman S. A role for the H4 subunit of vaccinia RNA polymerase in transcription initiation at a viral early promoter. J Biol Chem. 1994 May 13;269(19):14323–14328. [PubMed] [Google Scholar]
- Guo P. X., Moss B. Interaction and mutual stabilization of the two subunits of vaccinia virus mRNA capping enzyme coexpressed in Escherichia coli. Proc Natl Acad Sci U S A. 1990 Jun;87(11):4023–4027. doi: 10.1073/pnas.87.11.4023. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hagler J., Luo Y., Shuman S. Factor-dependent transcription termination by vaccinia RNA polymerase. Kinetic coupling and requirement for ATP hydrolysis. J Biol Chem. 1994 Apr 1;269(13):10050–10060. [PubMed] [Google Scholar]
- Hagler J., Shuman S. A freeze-frame view of eukaryotic transcription during elongation and capping of nascent mRNA. Science. 1992 Feb 21;255(5047):983–986. doi: 10.1126/science.1546295. [DOI] [PubMed] [Google Scholar]
- Hagler J., Shuman S. Nascent RNA cleavage by purified ternary complexes of vaccinia RNA polymerase. J Biol Chem. 1993 Jan 25;268(3):2166–2173. [PubMed] [Google Scholar]
- Hagler J., Shuman S. Stability of ternary transcription complexes of vaccinia virus RNA polymerase at promoter-proximal positions. J Biol Chem. 1992 Apr 15;267(11):7644–7654. [PubMed] [Google Scholar]
- Higman M. A., Bourgeois N., Niles E. G. The vaccinia virus mRNA (guanine-N7-)-methyltransferase requires both subunits of the mRNA capping enzyme for activity. J Biol Chem. 1992 Aug 15;267(23):16430–16437. [PubMed] [Google Scholar]
- Higman M. A., Christen L. A., Niles E. G. The mRNA (guanine-7-)methyltransferase domain of the vaccinia virus mRNA capping enzyme. Expression in Escherichia coli and structural and kinetic comparison to the intact capping enzyme. J Biol Chem. 1994 May 27;269(21):14974–14981. [PubMed] [Google Scholar]
- Luo Y., Hagler J., Shuman S. Discrete functional stages of vaccinia virus early transcription during a single round of RNA synthesis in vitro. J Biol Chem. 1991 Jul 15;266(20):13303–13310. [PubMed] [Google Scholar]
- Luo Y., Shuman S. RNA binding properties of vaccinia virus capping enzyme. J Biol Chem. 1993 Oct 5;268(28):21253–21262. [PubMed] [Google Scholar]
- Mao X., Shuman S. Intrinsic RNA (guanine-7) methyltransferase activity of the vaccinia virus capping enzyme D1 subunit is stimulated by the D12 subunit. Identification of amino acid residues in the D1 protein required for subunit association and methyl group transfer. J Biol Chem. 1994 Sep 30;269(39):24472–24479. [PubMed] [Google Scholar]
- Martin S. A., Paoletti E., Moss B. Purification of mRNA guanylyltransferase and mRNA (guanine-7-) methyltransferase from vaccinia virions. J Biol Chem. 1975 Dec 25;250(24):9322–9329. [PubMed] [Google Scholar]
- Moss B., Ahn B. Y., Amegadzie B., Gershon P. D., Keck J. G. Cytoplasmic transcription system encoded by vaccinia virus. J Biol Chem. 1991 Jan 25;266(3):1355–1358. [PubMed] [Google Scholar]
- Niles E. G., Christen L. Identification of the vaccinia virus mRNA guanyltransferase active site lysine. J Biol Chem. 1993 Nov 25;268(33):24986–24989. [PubMed] [Google Scholar]
- Niles E. G., Condit R. C., Caro P., Davidson K., Matusick L., Seto J. Nucleotide sequence and genetic map of the 16-kb vaccinia virus HindIII D fragment. Virology. 1986 Aug;153(1):96–112. doi: 10.1016/0042-6822(86)90011-5. [DOI] [PubMed] [Google Scholar]
- Niles E. G., Lee-Chen G. J., Shuman S., Moss B., Broyles S. S. Vaccinia virus gene D12L encodes the small subunit of the viral mRNA capping enzyme. Virology. 1989 Oct;172(2):513–522. doi: 10.1016/0042-6822(89)90194-3. [DOI] [PubMed] [Google Scholar]
- Rohrmann G., Yuen L., Moss B. Transcription of vaccinia virus early genes by enzymes isolated from vaccinia virions terminates downstream of a regulatory sequence. Cell. 1986 Sep 26;46(7):1029–1035. doi: 10.1016/0092-8674(86)90702-6. [DOI] [PubMed] [Google Scholar]
- Shuman S., Broyles S. S., Moss B. Purification and characterization of a transcription termination factor from vaccinia virions. J Biol Chem. 1987 Sep 5;262(25):12372–12380. [PubMed] [Google Scholar]
- Shuman S. Catalytic activity of vaccinia mRNA capping enzyme subunits coexpressed in Escherichia coli. J Biol Chem. 1990 Jul 15;265(20):11960–11966. [PubMed] [Google Scholar]
- Shuman S. Functional domains of vaccinia virus mRNA capping enzyme. Analysis by limited tryptic digestion. J Biol Chem. 1989 Jun 5;264(16):9690–9695. [PubMed] [Google Scholar]
- Shuman S., Hurwitz J. Mechanism of mRNA capping by vaccinia virus guanylyltransferase: characterization of an enzyme--guanylate intermediate. Proc Natl Acad Sci U S A. 1981 Jan;78(1):187–191. doi: 10.1073/pnas.78.1.187. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shuman S., Morham S. G. Domain structure of vaccinia virus mRNA capping enzyme. Activity of the Mr 95,000 subunit expressed in Escherichia coli. J Biol Chem. 1990 Jul 15;265(20):11967–11972. [PubMed] [Google Scholar]
- Shuman S., Moss B. Factor-dependent transcription termination by vaccinia virus RNA polymerase. Evidence that the cis-acting termination signal is in nascent RNA. J Biol Chem. 1988 May 5;263(13):6220–6225. [PubMed] [Google Scholar]
- Shuman S., Surks M., Furneaux H., Hurwitz J. Purification and characterization of a GTP-pyrophosphate exchange activity from vaccinia virions. Association of the GTP-pyrophosphate exchange activity with vaccinia mRNA guanylyltransferase . RNA (guanine-7-)methyltransferase complex (capping enzyme). J Biol Chem. 1980 Dec 10;255(23):11588–11598. [PubMed] [Google Scholar]
- Vos J. C., Sasker M., Stunnenberg H. G. Vaccinia virus capping enzyme is a transcription initiation factor. EMBO J. 1991 Sep;10(9):2553–2558. doi: 10.1002/j.1460-2075.1991.tb07795.x. [DOI] [PMC free article] [PubMed] [Google Scholar]