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. 1996 Aug;70(8):5548–5556. doi: 10.1128/jvi.70.8.5548-5556.1996

A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein.

G V Merkulov 1, K M Swiderek 1, C B Brachmann 1, J D Boeke 1
PMCID: PMC190514  PMID: 8764068

Abstract

Cleavage of the Gag and Gag-Pol polyprotein precursors is a critical step in proliferation of retroviruses and retroelements. The Ty1 retroelement of Saccharomyces cerevisiae forms virus-like particles (VLPs) made of the Gag protein. Ty1 Gag is not obviously homologous to the Gag proteins of retroviruses. The apparent molecular mass of Gag is reduced from 58 to 54 kDa during particle maturation. Antibodies raised against the C-terminal peptide of Gag react with the 58-kDa polypeptide but not with the 54-kDa one, indicating that Gag is proteolytically processed at the C terminus. A protease cleavage site between positions 401 and 402 of the Gag precursor was defined by carboxy-terminal sequencing of the processed form of Gag. Certain deletion and substitution mutations in the C terminus of the Gag precursor result in particles that are two-thirds the diameter of the wild-type VLPs. While the Ty1 protease is active in these mutants, their transposition rates are decreased 20-fold compared with that of wild-type Ty1. Thus, the Gag C-terminal portion, released in the course of particle maturation, probably plays a significant role in VLP morphogenesis and Ty1 transposition.

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Selected References

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  1. Adams S. E., Mellor J., Gull K., Sim R. B., Tuite M. F., Kingsman S. M., Kingsman A. J. The functions and relationships of Ty-VLP proteins in yeast reflect those of mammalian retroviral proteins. Cell. 1987 Apr 10;49(1):111–119. doi: 10.1016/0092-8674(87)90761-6. [DOI] [PubMed] [Google Scholar]
  2. Bailey J. M., Shively J. E. Carboxy-terminal sequencing: formation and hydrolysis of C-terminal peptidylthiohydantoins. Biochemistry. 1990 Mar 27;29(12):3145–3156. doi: 10.1021/bi00464a035. [DOI] [PubMed] [Google Scholar]
  3. Boeke J. D., Eichinger D. J., Natsoulis G. Doubling Ty1 element copy number in Saccharomyces cerevisiae: host genome stability and phenotypic effects. Genetics. 1991 Dec;129(4):1043–1052. doi: 10.1093/genetics/129.4.1043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Boeke J. D., Garfinkel D. J., Styles C. A., Fink G. R. Ty elements transpose through an RNA intermediate. Cell. 1985 Mar;40(3):491–500. doi: 10.1016/0092-8674(85)90197-7. [DOI] [PubMed] [Google Scholar]
  5. Braiterman L. T., Boeke J. D. Ty1 in vitro integration: effects of mutations in cis and in trans. Mol Cell Biol. 1994 Sep;14(9):5731–5740. doi: 10.1128/mcb.14.9.5731. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Braiterman L. T., Monokian G. M., Eichinger D. J., Merbs S. L., Gabriel A., Boeke J. D. In-frame linker insertion mutagenesis of yeast transposon Ty1: phenotypic analysis. Gene. 1994 Feb 11;139(1):19–26. doi: 10.1016/0378-1119(94)90518-5. [DOI] [PubMed] [Google Scholar]
  7. Brookman J. L., Stott A. J., Cheeseman P. J., Burns N. R., Adams S. E., Kingsman A. J., Gull K. An immunological analysis of Ty1 virus-like particle structure. Virology. 1995 Feb 20;207(1):59–67. doi: 10.1006/viro.1995.1051. [DOI] [PubMed] [Google Scholar]
  8. Burns N. R., Saibil H. R., White N. S., Pardon J. F., Timmins P. A., Richardson S. M., Richards B. M., Adams S. E., Kingsman S. M., Kingsman A. J. Symmetry, flexibility and permeability in the structure of yeast retrotransposon virus-like particles. EMBO J. 1992 Mar;11(3):1155–1164. doi: 10.1002/j.1460-2075.1992.tb05156.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Cameron J. R., Loh E. Y., Davis R. W. Evidence for transposition of dispersed repetitive DNA families in yeast. Cell. 1979 Apr;16(4):739–751. doi: 10.1016/0092-8674(79)90090-4. [DOI] [PubMed] [Google Scholar]
  10. Clare J. J., Belcourt M., Farabaugh P. J. Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6816–6820. doi: 10.1073/pnas.85.18.6816. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Curcio M. J., Garfinkel D. J. Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing. Mol Cell Biol. 1992 Jun;12(6):2813–2825. doi: 10.1128/mcb.12.6.2813. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Eichinger D. J., Boeke J. D. The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition. Cell. 1988 Sep 23;54(7):955–966. doi: 10.1016/0092-8674(88)90110-9. [DOI] [PubMed] [Google Scholar]
  13. Garfinkel D. J., Boeke J. D., Fink G. R. Ty element transposition: reverse transcriptase and virus-like particles. Cell. 1985 Sep;42(2):507–517. doi: 10.1016/0092-8674(85)90108-4. [DOI] [PubMed] [Google Scholar]
  14. Garfinkel D. J., Hedge A. M., Youngren S. D., Copeland T. D. Proteolytic processing of pol-TYB proteins from the yeast retrotransposon Ty1. J Virol. 1991 Sep;65(9):4573–4581. doi: 10.1128/jvi.65.9.4573-4581.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kawakami K., Pande S., Faiola B., Moore D. P., Boeke J. D., Farabaugh P. J., Strathern J. N., Nakamura Y., Garfinkel D. J. A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics. 1993 Oct;135(2):309–320. doi: 10.1093/genetics/135.2.309. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kirchner J., Sandmeyer S. Proteolytic processing of Ty3 proteins is required for transposition. J Virol. 1993 Jan;67(1):19–28. doi: 10.1128/jvi.67.1.19-28.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Kunkel T. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci U S A. 1985 Jan;82(2):488–492. doi: 10.1073/pnas.82.2.488. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Kyte J., Doolittle R. F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982 May 5;157(1):105–132. doi: 10.1016/0022-2836(82)90515-0. [DOI] [PubMed] [Google Scholar]
  19. Louis J. M., Nashed N. T., Parris K. D., Kimmel A. R., Jerina D. M. Kinetics and mechanism of autoprocessing of human immunodeficiency virus type 1 protease from an analog of the Gag-Pol polyprotein. Proc Natl Acad Sci U S A. 1994 Aug 16;91(17):7970–7974. doi: 10.1073/pnas.91.17.7970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Mellor J., Fulton A. M., Dobson M. J., Roberts N. A., Wilson W., Kingsman A. J., Kingsman S. M. The Ty transposon of Saccharomyces cerevisiae determines the synthesis of at least three proteins. Nucleic Acids Res. 1985 Sep 11;13(17):6249–6263. doi: 10.1093/nar/13.17.6249. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Mellor J., Malim M. H., Gull K., Tuite M. F., McCready S., Dibbayawan T., Kingsman S. M., Kingsman A. J. Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast. Nature. 1985 Dec 12;318(6046):583–586. doi: 10.1038/318583a0. [DOI] [PubMed] [Google Scholar]
  22. Monokian G. M., Braiterman L. T., Boeke J. D. In-frame linker insertion mutagenesis of yeast transposon Ty1: mutations, transposition and dominance. Gene. 1994 Feb 11;139(1):9–18. doi: 10.1016/0378-1119(94)90517-7. [DOI] [PubMed] [Google Scholar]
  23. Moore S. P., Garfinkel D. J. Expression and partial purification of enzymatically active recombinant Ty1 integrase in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1994 Mar 1;91(5):1843–1847. doi: 10.1073/pnas.91.5.1843. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Müller F., Brühl K. H., Freidel K., Kowallik K. V., Ciriacy M. Processing of TY1 proteins and formation of Ty1 virus-like particles in Saccharomyces cerevisiae. Mol Gen Genet. 1987 May;207(2-3):421–429. doi: 10.1007/BF00331610. [DOI] [PubMed] [Google Scholar]
  25. Pettit S. C., Simsic J., Loeb D. D., Everitt L., Hutchison C. A., 3rd, Swanstrom R. Analysis of retroviral protease cleavage sites reveals two types of cleavage sites and the structural requirements of the P1 amino acid. J Biol Chem. 1991 Aug 5;266(22):14539–14547. [PubMed] [Google Scholar]
  26. Xu H., Boeke J. D. Inhibition of Ty1 transposition by mating pheromones in Saccharomyces cerevisiae. Mol Cell Biol. 1991 May;11(5):2736–2743. doi: 10.1128/mcb.11.5.2736. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Youngren S. D., Boeke J. D., Sanders N. J., Garfinkel D. J. Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition. Mol Cell Biol. 1988 Apr;8(4):1421–1431. doi: 10.1128/mcb.8.4.1421. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Zybarth G., Kräusslich H. G., Partin K., Carter C. Proteolytic activity of novel human immunodeficiency virus type 1 proteinase proteins from a precursor with a blocking mutation at the N terminus of the PR domain. J Virol. 1994 Jan;68(1):240–250. doi: 10.1128/jvi.68.1.240-250.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]

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