Abstract
A PCR-based method for the controlled manipulation of individual genomic sites of poliovirus with concomitant preservation of the sequence heterogeneity of the rest of the genome is proposed. The new approach can be used for the creation of stable DNA repositories of populations of extremely heterogenous RNA viruses and may have implications for live vaccine technology.
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Selected References
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- Afzal M. A., Pickford A. R., Forsey T., Heath A. B., Minor P. D. The Jeryl Lynn vaccine strain of mumps virus is a mixture of two distinct isolates. J Gen Virol. 1993 May;74(Pt 5):917–920. doi: 10.1099/0022-1317-74-5-917. [DOI] [PubMed] [Google Scholar]
- Andino R., Silvera D., Suggett S. D., Achacoso P. L., Miller C. J., Baltimore D., Feinberg M. B. Engineering poliovirus as a vaccine vector for the expression of diverse antigens. Science. 1994 Sep 2;265(5177):1448–1451. doi: 10.1126/science.8073288. [DOI] [PubMed] [Google Scholar]
- Barnes W. M. PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci U S A. 1994 Mar 15;91(6):2216–2220. doi: 10.1073/pnas.91.6.2216. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chao L. Fitness of RNA virus decreased by Muller's ratchet. Nature. 1990 Nov 29;348(6300):454–455. doi: 10.1038/348454a0. [DOI] [PubMed] [Google Scholar]
- Chumakov K. M., Dragunsky E. M., Norwood L. P., Douthitt M. P., Ran Y., Taffs R. E., Ridge J., Levenbook I. S. Consistent selection of mutations in the 5'-untranslated region of oral poliovirus vaccine upon passaging in vitro. J Med Virol. 1994 Jan;42(1):79–85. doi: 10.1002/jmv.1890420115. [DOI] [PubMed] [Google Scholar]
- Chumakov K. M., Norwood L. P., Parker M. L., Dragunsky E. M., Ran Y. X., Levenbook I. S. RNA sequence variants in live poliovirus vaccine and their relation to neurovirulence. J Virol. 1992 Feb;66(2):966–970. doi: 10.1128/jvi.66.2.966-970.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chumakov K. M., Powers L. B., Noonan K. E., Roninson I. B., Levenbook I. S. Correlation between amount of virus with altered nucleotide sequence and the monkey test for acceptability of oral poliovirus vaccine. Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):199–203. doi: 10.1073/pnas.88.1.199. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chumakov K., Norwood L., Parker M., Dragunsky E., Taffs R., Ran Y., Ridge J., Levenbook I. Assessment of the viral RNA sequence heterogeneity for control of OPV neurovirulence. Dev Biol Stand. 1993;78:79–89. [PubMed] [Google Scholar]
- Clarke D. K., Duarte E. A., Elena S. F., Moya A., Domingo E., Holland J. The red queen reigns in the kingdom of RNA viruses. Proc Natl Acad Sci U S A. 1994 May 24;91(11):4821–4824. doi: 10.1073/pnas.91.11.4821. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Domingo E., Martínez-Salas E., Sobrino F., de la Torre J. C., Portela A., Ortín J., López-Galindez C., Pérez-Breña P., Villanueva N., Nájera R. The quasispecies (extremely heterogeneous) nature of viral RNA genome populations: biological relevance--a review. Gene. 1985;40(1):1–8. doi: 10.1016/0378-1119(85)90017-4. [DOI] [PubMed] [Google Scholar]
- Duarte E. A., Clarke D. K., Moya A., Elena S. F., Domingo E., Holland J. Many-trillionfold amplification of single RNA virus particles fails to overcome the Muller's ratchet effect. J Virol. 1993 Jun;67(6):3620–3623. doi: 10.1128/jvi.67.6.3620-3623.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Duarte E. A., Novella I. S., Ledesma S., Clarke D. K., Moya A., Elena S. F., Domingo E., Holland J. J. Subclonal components of consensus fitness in an RNA virus clone. J Virol. 1994 Jul;68(7):4295–4301. doi: 10.1128/jvi.68.7.4295-4301.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Duarte E. A., Novella I. S., Weaver S. C., Domingo E., Wain-Hobson S., Clarke D. K., Moya A., Elena S. F., de la Torre J. C., Holland J. J. RNA virus quasispecies: significance for viral disease and epidemiology. Infect Agents Dis. 1994 Aug;3(4):201–214. [PubMed] [Google Scholar]
- Duarte E., Clarke D., Moya A., Domingo E., Holland J. Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet. Proc Natl Acad Sci U S A. 1992 Jul 1;89(13):6015–6019. doi: 10.1073/pnas.89.13.6015. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holland J., Spindler K., Horodyski F., Grabau E., Nichol S., VandePol S. Rapid evolution of RNA genomes. Science. 1982 Mar 26;215(4540):1577–1585. doi: 10.1126/science.7041255. [DOI] [PubMed] [Google Scholar]
- Kohara M., Abe S., Kuge S., Semler B. L., Komatsu T., Arita M., Itoh H., Nomoto A. An infectious cDNA clone of the poliovirus Sabin strain could be used as a stable repository and inoculum for the oral polio live vaccine. Virology. 1986 May;151(1):21–30. doi: 10.1016/0042-6822(86)90100-5. [DOI] [PubMed] [Google Scholar]
- Lu Z., Douthitt M. P., Taffs R. E., Ran Y., Norwood L. P., Chumakov K. M. Quantitative aspects of the mutant analysis by PCR and restriction enzyme cleavage (MAPREC). PCR Methods Appl. 1993 Dec;3(3):176–180. doi: 10.1101/gr.3.3.176. [DOI] [PubMed] [Google Scholar]
- Mullis K., Faloona F., Scharf S., Saiki R., Horn G., Erlich H. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol. 1986;51(Pt 1):263–273. doi: 10.1101/sqb.1986.051.01.032. [DOI] [PubMed] [Google Scholar]
- Novella I. S., Duarte E. A., Elena S. F., Moya A., Domingo E., Holland J. J. Exponential increases of RNA virus fitness during large population transmissions. Proc Natl Acad Sci U S A. 1995 Jun 20;92(13):5841–5844. doi: 10.1073/pnas.92.13.5841. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Racaniello V. R., Baltimore D. Cloned poliovirus complementary DNA is infectious in mammalian cells. Science. 1981 Nov 20;214(4523):916–919. doi: 10.1126/science.6272391. [DOI] [PubMed] [Google Scholar]
- Rezapkin G. V., Chumakov K. M., Lu Z., Ran Y., Dragunsky E. M., Levenbook I. S. Microevolution of Sabin 1 strain in vitro and genetic stability of oral poliovirus vaccine. Virology. 1994 Jul;202(1):370–378. doi: 10.1006/viro.1994.1353. [DOI] [PubMed] [Google Scholar]
- Rezapkin G. V., Norwood L. P., Taffs R. E., Dragunsky E. M., Levenbook I. S., Chumakov K. M. Microevolution of type 3 Sabin strain of poliovirus in cell cultures and its implications for oral poliovirus vaccine quality control. Virology. 1995 Aug 20;211(2):377–384. doi: 10.1006/viro.1995.1420. [DOI] [PubMed] [Google Scholar]
- Taffs R. E., Chumakov K. M., Rezapkin G. V., Lu Z., Douthitt M., Dragunsky E. M., Levenbook I. S. Genetic stability and mutant selection in Sabin 2 strain of oral poliovirus vaccine grown under different cell culture conditions. Virology. 1995 Jun 1;209(2):366–373. doi: 10.1006/viro.1995.1268. [DOI] [PubMed] [Google Scholar]
- Tindall K. R., Kunkel T. A. Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry. 1988 Aug 9;27(16):6008–6013. doi: 10.1021/bi00416a027. [DOI] [PubMed] [Google Scholar]
- Ward C. D., Flanegan J. B. Determination of the poliovirus RNA polymerase error frequency at eight sites in the viral genome. J Virol. 1992 Jun;66(6):3784–3793. doi: 10.1128/jvi.66.6.3784-3793.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ward C. D., Stokes M. A., Flanegan J. B. Direct measurement of the poliovirus RNA polymerase error frequency in vitro. J Virol. 1988 Feb;62(2):558–562. doi: 10.1128/jvi.62.2.558-562.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]