Abstract
The coronavirus mouse hepatitis virus (MHV) contains a large open reading frame embedded entirely within the 5' half of its nucleocapsid (N) gene. This internal gene (designated I) is in the +1 reading frame with respect to the N gene, and it encodes a mostly hydrophobic 23-kDa polypeptide. We have found that this protein is expressed in MHV-infected cells and that it is a previously unrecognized structural protein of the virion. To analyze the potential biological importance of the I gene, we disrupted its expression by site-directed mutagenesis using targeted RNA recombination. The start codon for I was replaced by a threonine codon, and a stop codon was introduced at a short interval downstream. Both alterations created silent changes in the N reading frame. In vitro translation studies showed that these mutations completely abolished synthesis of I protein, and immunological analysis of infected cell lysates confirmed this conclusion. The MHV I mutant was viable and grew to high titer. However, the I mutant had a reduced plaque size in comparison with its isogenic wild-type counterpart, suggesting that expression of I confers some minor growth advantage to the virus. The engineered mutations were stable during the course of experimental infection in mice, and the I mutant showed no significant differences from wild type in its ability to replicate in the brains or livers of infected animals. These results demonstrate that I protein is not essential for the replication of MHV either in tissue culture or in its natural host.
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- Chamberlain J. P. Fluorographic detection of radioactivity in polyacrylamide gels with the water-soluble fluor, sodium salicylate. Anal Biochem. 1979 Sep 15;98(1):132–135. doi: 10.1016/0003-2697(79)90716-4. [DOI] [PubMed] [Google Scholar]
- Compton S. R., Barthold S. W., Smith A. L. The cellular and molecular pathogenesis of coronaviruses. Lab Anim Sci. 1993 Feb;43(1):15–28. [PubMed] [Google Scholar]
- Décimo D., Philippe H., Hadchouel M., Tardieu M., Meunier-Rotival M. The gene encoding the nucleocapsid protein: sequence analysis in murine hepatitis virus type 3 and evolution in Coronaviridae. Arch Virol. 1993;130(3-4):279–288. doi: 10.1007/BF01309660. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ernst H., Shatkin A. J. Reovirus hemagglutinin mRNA codes for two polypeptides in overlapping reading frames. Proc Natl Acad Sci U S A. 1985 Jan;82(1):48–52. doi: 10.1073/pnas.82.1.48. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fichot O., Girard M. An improved method for sequencing of RNA templates. Nucleic Acids Res. 1990 Oct 25;18(20):6162–6162. doi: 10.1093/nar/18.20.6162. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Frolov I., Schlesinger S. Translation of Sindbis virus mRNA: effects of sequences downstream of the initiating codon. J Virol. 1994 Dec;68(12):8111–8117. doi: 10.1128/jvi.68.12.8111-8117.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Giorgi C., Blumberg B. M., Kolakofsky D. Sendai virus contains overlapping genes expressed from a single mRNA. Cell. 1983 Dec;35(3 Pt 2):829–836. doi: 10.1016/0092-8674(83)90115-0. [DOI] [PubMed] [Google Scholar]
- Hingley S. T., Gombold J. L., Lavi E., Weiss S. R. MHV-A59 fusion mutants are attenuated and display altered hepatotropism. Virology. 1994 Apr;200(1):1–10. doi: 10.1006/viro.1994.1156. [DOI] [PubMed] [Google Scholar]
- Homberger F. R. Sequence analysis of the nucleoprotein genes of three enterotropic strains of murine coronavirus. Arch Virol. 1995;140(3):571–579. doi: 10.1007/BF01718432. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jacobs B. L., Samuel C. E. Biosynthesis of reovirus-specified polypeptides: the reovirus s1 mRNA encodes two primary translation products. Virology. 1985 May;143(1):63–74. doi: 10.1016/0042-6822(85)90097-2. [DOI] [PubMed] [Google Scholar]
- Kingsman S. M., Samuel C. E. Mechanism of interferon action. Interferon-mediated inhibition of simian virus-40 early RNA accumulation. Virology. 1980 Mar;101(2):458–465. doi: 10.1016/0042-6822(80)90459-6. [DOI] [PubMed] [Google Scholar]
- Koetzner C. A., Parker M. M., Ricard C. S., Sturman L. S., Masters P. S. Repair and mutagenesis of the genome of a deletion mutant of the coronavirus mouse hepatitis virus by targeted RNA recombination. J Virol. 1992 Apr;66(4):1841–1848. doi: 10.1128/jvi.66.4.1841-1848.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kozak M. Bifunctional messenger RNAs in eukaryotes. Cell. 1986 Nov 21;47(4):481–483. doi: 10.1016/0092-8674(86)90609-4. [DOI] [PubMed] [Google Scholar]
- Kozak M. The scanning model for translation: an update. J Cell Biol. 1989 Feb;108(2):229–241. doi: 10.1083/jcb.108.2.229. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kunita S., Mori M., Terada E. Sequence analysis of the nucleocapsid protein gene of rat coronavirus SDAV-681. Virology. 1993 Mar;193(1):520–523. doi: 10.1006/viro.1993.1158. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kunita S., Terada E., Goto K., Kagiyama N. Sequence analysis and molecular detection of mouse hepatitis virus using the polymerase chain reaction. Lab Anim Sci. 1992 Dec;42(6):593–598. [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Lai M. M. Coronavirus: organization, replication and expression of genome. Annu Rev Microbiol. 1990;44:303–333. doi: 10.1146/annurev.mi.44.100190.001511. [DOI] [PubMed] [Google Scholar]
- Lapps W., Hogue B. G., Brian D. A. Sequence analysis of the bovine coronavirus nucleocapsid and matrix protein genes. Virology. 1987 Mar;157(1):47–57. doi: 10.1016/0042-6822(87)90312-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luytjes W., Bredenbeek P. J., Noten A. F., Horzinek M. C., Spaan W. J. Sequence of mouse hepatitis virus A59 mRNA 2: indications for RNA recombination between coronaviruses and influenza C virus. Virology. 1988 Oct;166(2):415–422. doi: 10.1016/0042-6822(88)90512-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Masters P. S., Koetzner C. A., Kerr C. A., Heo Y. Optimization of targeted RNA recombination and mapping of a novel nucleocapsid gene mutation in the coronavirus mouse hepatitis virus. J Virol. 1994 Jan;68(1):328–337. doi: 10.1128/jvi.68.1.328-337.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Masters P. S. Localization of an RNA-binding domain in the nucleocapsid protein of the coronavirus mouse hepatitis virus. Arch Virol. 1992;125(1-4):141–160. doi: 10.1007/BF01309634. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Parker M. M., Masters P. S. Sequence comparison of the N genes of five strains of the coronavirus mouse hepatitis virus suggests a three domain structure for the nucleocapsid protein. Virology. 1990 Nov;179(1):463–468. doi: 10.1016/0042-6822(90)90316-J. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peng D., Koetzner C. A., Masters P. S. Analysis of second-site revertants of a murine coronavirus nucleocapsid protein deletion mutant and construction of nucleocapsid protein mutants by targeted RNA recombination. J Virol. 1995 Jun;69(6):3449–3457. doi: 10.1128/jvi.69.6.3449-3457.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peng D., Koetzner C. A., McMahon T., Zhu Y., Masters P. S. Construction of murine coronavirus mutants containing interspecies chimeric nucleocapsid proteins. J Virol. 1995 Sep;69(9):5475–5484. doi: 10.1128/jvi.69.9.5475-5484.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Radecke F., Billeter M. A. The nonstructural C protein is not essential for multiplication of Edmonston B strain measles virus in cultured cells. Virology. 1996 Mar 1;217(1):418–421. doi: 10.1006/viro.1996.0134. [DOI] [PubMed] [Google Scholar]
- Samuel C. E. Polycistronic animal virus mRNAs. Prog Nucleic Acid Res Mol Biol. 1989;37:127–153. doi: 10.1016/S0079-6603(08)60697-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwarz B., Routledge E., Siddell S. G. Murine coronavirus nonstructural protein ns2 is not essential for virus replication in transformed cells. J Virol. 1990 Oct;64(10):4784–4791. doi: 10.1128/jvi.64.10.4784-4791.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Senanayake S. D., Hofmann M. A., Maki J. L., Brian D. A. The nucleocapsid protein gene of bovine coronavirus is bicistronic. J Virol. 1992 Sep;66(9):5277–5283. doi: 10.1128/jvi.66.9.5277-5283.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shaw M. W., Choppin P. W., Lamb R. A. A previously unrecognized influenza B virus glycoprotein from a bicistronic mRNA that also encodes the viral neuraminidase. Proc Natl Acad Sci U S A. 1983 Aug;80(16):4879–4883. doi: 10.1073/pnas.80.16.4879. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Skinner M. A., Siddell S. G. Coronavirus JHM: nucleotide sequence of the mRNA that encodes nucleocapsid protein. Nucleic Acids Res. 1983 Aug 11;11(15):5045–5054. doi: 10.1093/nar/11.15.5045. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sturman L. S., Holmes K. V. The molecular biology of coronaviruses. Adv Virus Res. 1983;28:35–112. doi: 10.1016/S0065-3527(08)60721-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weiner R. S., Andersen T. T., Dias J. A. Topographic analysis of the alpha-subunit of human follicle-stimulating hormone using site-specific antipeptide antisera. Endocrinology. 1990 Aug;127(2):573–579. doi: 10.1210/endo-127-2-573. [DOI] [PubMed] [Google Scholar]
- Weiss S. R., Zoltick P. W., Leibowitz J. L. The ns 4 gene of mouse hepatitis virus (MHV), strain A 59 contains two ORFs and thus differs from ns 4 of the JHM and S strains. Arch Virol. 1993;129(1-4):301–309. doi: 10.1007/BF01316905. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yokomori K., Lai M. M. Mouse hepatitis virus S RNA sequence reveals that nonstructural proteins ns4 and ns5a are not essential for murine coronavirus replication. J Virol. 1991 Oct;65(10):5605–5608. doi: 10.1128/jvi.65.10.5605-5608.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yu X., Bi W., Weiss S. R., Leibowitz J. L. Mouse hepatitis virus gene 5b protein is a new virion envelope protein. Virology. 1994 Aug 1;202(2):1018–1023. doi: 10.1006/viro.1994.1430. [DOI] [PubMed] [Google Scholar]