Abstract
Alzheimer’s disease is characterized by the deposition of amyloid β-peptide (Aβ) plaques in the brain. Full-length amyloid-β precursor protein (APP) is processed by α- and β-secretases to yield soluble APP derivatives and membrane-bound C-terminal fragments, which are further processed by γ-secretase to a non-amyloidogenic 3 kDa product or to Aβ fragments. As different Aβ fragments contain different parts of the APP transmembrane helix, one may speculate that they are retained more or less efficiently in the membrane. Here, we use the translocon-mediated insertion of different APP-derived polypeptide segments into the endoplasmic reticulum membrane to assess the propensities for membrane retention of Aβ fragments. Our results show a strong correlation between the length of an Aβ-derived segment and its ability to integrate into the microsomal membrane.
Keywords: amyloid β-protein precursor, Aβ-peptide, translocon mediated, membrane insertion
1. Introduction
The aggregation of fibrillar amyloid β-peptide (Aβ) is thought to be the primary neuropathological event in Alzheimer’s disease (AD) [1]. Aβ is a 4 kDa peptide, primarily found as deposits (plaques) in the cerebral cortex and limbic system of the Alzheimer brain [2]. Aβ is an internal fragment of the 110–120 kDa amyloid-β precursor protein (APP). Full-length APP is processed by at least three proteases (α-, β- and γ-secretase), Fig. 1. α-Secretase cleaves APP within the Aβ domain to generate a soluble N-terminal and a membrane-bound C-terminal fragment (CTF) [4]. β-Secretase produces carboxyl-terminal fragments of APP by cleaving in its luminal domain [5]. Cleavage by α-secretase or β-secretase within the luminal/extracellular domain results in the formation of the large soluble APP domains, called APPsα and APPsβ, respectively, and a membrane-attached carboxyl-terminal fragment (αCTF or βCTF).
Finally, γ-secretase cleaves βCTF in the middle of its transmembrane domain, leading to the release of Aβ, Fig. 1. Identification of multiple cleavage sites within the APP molecule has suggested that APP can also be cleaved by other proteases, namely ε- and ζ-secretases, that also generate an intracellular CTF domain (AICD) and longer Aβ fragments [6–8].
As different Aβ and CTF variants contain different portions of the APP transmembrane segment, one may suspect that they are released from the endoplasmic reticulum (ER) membrane to different degrees. Presumably, the formation of toxic aggregates will only take place after release of Aβ from the membrane, and inefficiently released fragments may hence be less toxic. In this study, we have measured the ability of different Aβ and CTF segments to insert into the membrane of microsomal vesicles derived from dog pancreas, using a system that allows precise measurement of the efficiency of membrane insertion of hydrophobic segments engineered into a model protein [9]. We find that association with the membrane is critically dependent on the length and the hydrophobicity of APP segment.
2. Material and methods
Enzymes and chemicals
All enzymes, plasmid pGEM1, DTT, and the TnT coupled transcription/translation system were from Promega (Madison, WI). [35S]-Met and deoxyribonucleotides were from GE-Healthcare (Uppsala, Sweden). Oligonucleotides were from Cybergene (Stockholm, Sweden).
Plasmid construction
Site-specific mutagenesis was performed using the QuikChange™ Site-Directed Mutagenesis kit from Stratagene (La Jolla, USA). All mutants were confirmed by sequencing of plasmid DNA at BM labbet AB (Furulund, Sweden). All cloning steps were done according to standard procedures using restriction enzymes from Promega (Madison, USA).
DNA manipulations
H-segment-containing Lep constructs carrying acceptor sites for N-linked glycosylation in positions 96–98 (Asn-Ser-Thr; G1) and 258–260 (Asn-Ala-Thr; G2) [9] were expressed from the pGEM1 plasmid.
Oligonucleotides encoding the different H-segment APP fragments (Aβ peptides and CTF fragments) were introduced as previously described [9]. To mimic the natural Aβ peptide, tandem translation stop codons (TAG TAA) were introduced at the end of the APP fragment, together with an extra acceptor site N-terminal of the natural APP TM segment at position 27–29 (Asn-Lys-Thr) in the Aβ peptide using mutagenesis. To examine known human mutations in the APP domain and to insert proline residues in the Aβ TM segment, the desired amino acid was altered by site-specific mutagenesis. All APP inserts were confirmed by sequencing of plasmid DNA.
Expression in vitro
Constructs in pGEM1 were transcribed and translated in the TnT Quick systems from Promega. 1μg DNA template, 1 μl [35S]-Met (5 mCi) and 2 equivalents of dog pancreas rough microsomes [10] were added at the start of the reaction, and samples were incubated for 90 min at 30°C. Translation products were analyzed by SDS-PAGE and gels were visualized in a Fuji FLA-3000 phosphoimager and analyzed using the Image Reader 8.1j software.
The degree of membrane release of each APP fragment was quantified from SDS-PAGE gels (Fig. 3) by calculating the quotient between the intensity of the doubly glycosylated band divided by the summed intensities of the singly glycosylated and doubly glycosylated bands. On average, glycosylation levels vary by no more than ±2% between repeat experiments and all data points are mean values from at least two independent experiments.
3. Results
Model protein and membrane insertion assay
To estimate the degree of membrane retention of different Aβ fragments, we used a previously developed experimental system for measuring the efficiency of translocon-mediated insertion into the ER membrane of hydrophobic segments in membrane proteins [9]. Although the translocon is a complicated molecular machine [11,12], the available data suggests that translocon-mediated membrane insertion of hydrophobic segments is driven by peptide-lipid interactions [9,13–15]. Therefore, Aβ fragments should behave similarly in the membrane-insertion assay as they do after presenilin processing.
As in our earlier studies of protein insertion into the ER membrane, we used the well-characterized Escherichia coli inner membrane protein leader peptidase (Lep) as a model protein [9,16] to study the translocon-mediated membrane insertion of different APP-derived polypeptide segments. Lep consists of two transmembrane segments (H1, H2) connected by a short cytoplasmic loop (P1) and a large C-terminal periplasmic domain (P2). When expressed in vitro in the presence of dog pancreas rough microsomes, Lep adopts the same topology as in E. coli, with both the N terminus and the C-terminal P2 domain located in the lumen of the microsome [17]. The microsomes used in the assay are prepared from pancreas and not brain but, since the Sec61 translocon is the same in both tissues, the source of the preparation should not matter to the results.
We have constructed an engineered version of Lep [9] that allows quantitative measurements of the efficiency of membrane insertion of short polypeptide segments such as the Aβ fragments, Fig. 2A. Briefly, polypeptide segments corresponding to different Aβ segments are engineered into the P2 domain, 150 residues downstream of the H2 transmembrane segment. In addition, two Asn-X-Thr acceptor sites for N-linked glycosylation are present in the P2 domain: one (G1) between the H2 segment and the Aβ segment, and the other (G2) just downstream of the Aβ segment. After in vitro translation in the presence of microsomes, the degree of insertion into the membrane of a given Aβ segment can be quantified by comparing the fractions of singly glycosylated (i.e., membrane-integrated) and doubly glycosylated (i.e., released) molecules.
We have also used a different version of Lep in which the Aβ segment is present at the very C terminus of the molecule and where the G2 glycosylation site is placed immediately upstream of the Aβ segment. With this construct we can measure the membrane integration efficiency of Aβ segment with a free C terminus, more closely mimicking the situation after cleavage of the APP transmembrane segment by presenilin.
Membrane insertion of Aβ segments
To examine the membrane integration of different Aβ and C-terminal APP segments, we first introduced the chosen segments into the P2 domain of full-length Lep and measured the insertion into the ER membrane of Aβ 40, 42, 43, 45, 46, 48, 49 and the C-terminal segments C50, C57, C59 [6,18–21], Table SI. As expected, the natural APP transmembrane segment (Aβ TM from Gly700 to Leu723) is efficiently retained into the membrane (96–97% singly glycosylated molecules, both without and with additional flanking residues from APP), Fig. 2B. The shorter Aβ 40–43 segments, in contrast, are not retained in the ER membrane. Aβ 45 is released to about 34%, while little or no release is seen for Aβ 46–49, Fig. 2C and 4A.
The corresponding C-terminal segments show a similar behavior, with shorter segments being less efficiently integrated. The CTF 50 segment is efficiently released from the ER membrane (88% doubly glycosylated molecules) while CTF 57 is released to ~60% and CTF 59 hardly at all, Fig. 4A.
Membrane insertion of Aβ (stop) segments
In the above constructs, the Aβ segments are embedded within the larger full-length model protein. To more closely mimic the context of the hydrophobic segment in the natural Aβ peptides which, after cleavage by γ-, ζ- or ε-secretase, is located at the very C terminus of the peptide, we added stop codons after the Aβ segments and measured the efficiency of integration of these truncated constructs into the microsomal membrane. To this end, we introduced a new glycosylation acceptor site (G2’) in the Aβ-peptide portion, just N-terminal to the natural APP TM segment, Fig. 3A and Table SI. As an Asn-X-Thr glycosylation acceptor site must be located at least 14–15 residues from the membrane for efficient glycosylation [17], the G2’ site will only be glycosylated if the Aβ segment is released from the membrane, whereas the G1 site will be glycosylated regardless of whether the segment is released or not. For the truncated Aβ constructs, ~60% release was seen for the Aβ 46* construct (Fig. 3B and 4A), demonstrating that the C-terminal Aβ (stop) segments are slightly less efficiently integrated into the membrane than when they are embedded within the Lep P2 domain.
A number of known mutations associated with AD are located in the Aβ hydrophobic domain [22–25], Fig. 1. We selected four in which a hydrophobic residue is replaced by a more polar residue or vice versa for analysis: Thr714Ile, Ile716Thr, Val717Gly, and Leu723Pro (Fig. 1, indicated in red). The degree of membrane integration was measured for the first three in different Aβ (stop) constructs (Table S1); in no case did the mutation change the fraction of integrated molecules, Table S2. The toxicity of these mutant Aβ peptides therefore seems not to be associated with their degree of membrane retention but rather must reflect their aggregation propensity per se. The Leu723Pro mutation was tested in the CTF segment C57, Table S1. For this mutation the fraction of integrated CTF decreased from 37% to 5%, Table S2.
As our previous studies on membrane integration of transmembrane segments have suggested that efficient integration depends on the formation of an α-helical structure [9], we also made a set of constructs where a helix-breaking proline residue was inserted in the Aβ (stop) segments. We measured the membrane insertion of three Aβ (stop) constructs (Aβ 46*, 48* and 51*) with a proline residue either at position 37 or 43, Table SI. A significant decrease in insertion efficiency was seen for all constructs (Fig. 4B), suggesting that the membrane-integrated forms of Aβ must adopt a helical conformation.
4. Discussion
How efficiently are different Aβ peptides released from the membrane upon cleavage by γ-, ζ- or ε-secretase? To address this question, we have carried out a detailed study of the translocon-mediated insertion of different APP segments into microsomal membranes. Two different series of Aβ segments – one truncated at the C terminus and one with a long C-terminal tail – yield similar results: shorter Aβ segments (Aβ 40–45) are not integrated into the membrane, while longer ones (Aβ 46–49) are efficiently retained in the membrane, Fig. 5. Membrane integration of the different CTFs shows a similar dependency on the length of the remaining part of the APP transmembrane segment.
Different models for Aβ processing have been proposed in the literature: either γ-, ζ- and ε-cleavage are correlated with each other [6,19], or the γ- and ε-cleavage are independent processes [8,22]. Ihara and coworkers identified only two species of AICDs (C50 and C51), despite detection of various Aβ species (Aβ 40, 42, 43, 45, 46, 48, and 49) [18,19,21]. They, therefore, proposed a model in which longer Aβs are processed stepwise at every third residue by γ-secretase. In the context of this model, we would suggest that the stepwise processing occurs only for those Aβ species that are hydrophobic enough to be retained in the membrane. The intermediate products Aβ 48/49 would be generated by ε-secretase cleavage, the Aβ 48 and Aβ 49 products would be further processed by ζ- and γ-secretase to generate Aβ 45/46, and finally be released only when further cleaved to yield Aβ 40/42 [6].
Three known human mutations, Thr714Ile, Ile716Thr, and Val717Gly, which are close to the γ-secretase site and therefore suggested to change the pattern of APP processing, had no effect on the efficiency of Aβ segment insertion. The Leu723Pro mutation did, however, decrease the insertion of the CTF segment C57 into the membrane. Results for Aβ (stop) segments containing proline residues further suggest that the formation of an α-helical structure in the membrane-embedded part of Aβ is critical for efficient retention in the membrane.
In conclusion, we have demonstrated that different Aβ segments are integrated into the ER membrane to different degrees, depending on their overall length, hydrophobicity and helix potential. We speculate that this might also affect their access to the secretases in the ER membrane and their ability to partake in the formation of toxic aggregates.
Supplementary Material
Acknowledgments
We gratefully thank Yiwei Miao and Yuanlong Shao for technical assistance. This work was supported by grants from the Swedish Cancer Foundation to I.N and GvH, from Magnus Bergvalls Stiftelse, Henrik Granholms Stiftelse and Carl Tryggers Stiftelse to I.N, from the Swedish Research Council to J.N, by NIH grant GM26494 to A.E.J and support from the Robert A. Welch Chair grant BE-0017 to A.E.J.
The abbreviations used are
- AD
Alzheimer’s disease
- Aβ
amyloid β-peptide
- APP
amyloid β-protein precursor
- AICD
APP intracellular domain
- CTF
C-terminal fragment
- TM
transmembrane
- p3
3 kDa product
- ER
endoplasmic reticulum
- Lep
leader peptidase
Footnotes
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