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. Author manuscript; available in PMC: 2007 Nov 9.
Published in final edited form as: Neuron. 2006 Nov 9;52(3):511–524. doi: 10.1016/j.neuron.2006.09.014

Network Variability Limits Stimulus-Evoked Spike Timing Precision in Retinal Ganglion Cells

Gabe J Murphy 1, Fred Rieke 1
PMCID: PMC2032021  NIHMSID: NIHMS13746  PMID: 17088216

Abstract

Visual, auditory, somatosensory, and olfactory stimuli generate temporally precise patterns of action potentials (spikes). It is unclear, however, how the pattern and variability of synaptic input elicited by physiological stimuli governs the precision of spike generation. We determined how synaptic conductances evoked by light stimuli that activate the rod bipolar pathway control spike generation in three identified types of mouse retinal ganglion cells (RGCs). The relative amplitude, timing, and impact of excitatory and inhibitory input differed dramatically in On and Off RGCs. In each RGC type, however, the precision of light-evoked spikes was similar to that of spikes generated by somatic injection of measured light-evoked synaptic conductances that varied from trial to trial but less than that of spikes evoked by invariant synaptic conductances. Thus the rod bipolar pathway modulates different RGCs via unique combinations of synaptic input, and RGC temporal variability reflects variability in the input this circuit provides.

Introduction

Sensory stimuli evoke reproducible and temporally precise patterns of action potentials (APs) in neurons responsible for early sensory processing (reviewed in Buracas and Albright, 1999; Carr, 1993; Oertel, 1999; Petersen et al., 2002; Laurent, 1999). Rapidly changing features of time-varying tactile, auditory, and visual stimuli, for example, evoke APs that exhibit low (1-5 ms) trial-to-trial temporal variability in primary somatosensory, primary auditory, lateral geniculate, and middle temporal (MT) area neurons (Arabzadeh et al., 2005; Gabernet et al., 2005; DeWeese et al., 2003; Reinagel and Reid, 2000; Buracas et al., 1998). Variability in AP timing is generally assumed to reflect noise in the pattern and integration of synaptic input, as somatic injection of fluctuating current evokes highly reproducible and temporally precise patterns of APs in the absence of synaptic input (Mainen and Sejnowski, 1995; but see White et al., 2000).

Experiments performed in brain slices have identified multiple network and synaptic properties that facilitate the precision of APs evoked by electrical stimulation. Feedforward synaptic inhibition can truncate the temporal window over which excitatory inputs are integrated (Pouille and Scanziani, 2001), and synchronous input from GABAergic interneurons coupled by gap junctions can permit neurons to discriminate closely-timed excitatory inputs (Beierlein et al., 2000; Galarreta and Hestrin, 2001). Intrinsic mechanisms (Oertel, 1991; Trussell, 1997) and dendritic properties (Stuart et al., 2000; Magee, 2000; Reyes, 2001), can also facilitate precise spike timing and/or coincidence detection. It has proven difficult, however, to determine the mechanisms governing the precision of APs evoked by physiological stimuli in intact, active, tractable neural circuits.

The mammalian retina provides an opportunity to study simultaneously the precision of light-evoked AP generation and the network and intrinsic mechanisms governing that precision. Bright fluctuating light stimuli evoke spikes with high (1-5 ms) temporal precision in RGCs (Berry et al., 1997; Reich et al., 1997; Keat et al., 2001; Uzzell and Chichilnisky, 2004), but activate an incompletely understood constellation of retinal cells and circuits. Signals evoked by dim light stimuli, however, are conveyed and processed by a specific and identifiable circuit in mammalian retina - the rod bipolar pathway (reviewed by Bloomfield and Dacheux, 2001; Field et al., 2005).

Can signals carried by the rod bipolar pathway generate reproducible and precisely-timed APs in mammalian RGCs? If so, what properties of the cells and synapses that comprise the rod bipolar circuit enable and limit the precision of light-evoked AP generation? To answer these questions we (1) identified conditions under which light-evoked signals in three functionally-identified RGC types are dominated by input from the rod bipolar pathway; (2) characterized the precision of APs evoked by these stimuli; and (3) measured and manipulated the light-evoked synaptic inputs to understand how they govern AP generation. These experiments revealed that the amplitude, timing, and integration of excitatory and inhibitory synaptic input differed dramatically between On and Off RGCs. In all RGCs examined, however, repeated somatic injection of identical light-evoked synaptic conductances in the absence of synaptic input produced APs with substantially greater precision than APs evoked directly by light stimuli. Moreover, the temporal precision of APs evoked by somatic injection of measured synaptic conductances that varied from trial to trial closely resembled that of spikes evoked directly by light stimuli. These data provide direct evidence that variability in synaptic input provided by the rod bipolar pathway limits the temporal precision of light-evoked AP generation.

Results

Functional identification of ganglion cells

We used infrared differential interference contrast microscopy to target ganglion cells with the largest somata (>20 μm diameter) in a flat mount preparation of the mouse retina. Consistent with previous reports (Pang et al., 2003), we encountered three functional types of ganglion cell. On cells exhibited a sustained increase in firing rate during a step increase in light intensity from darkness to 10 Rh*/Rod/Sec (Fig. 1A). Off transient (Off T) cells generated a burst of spikes at light offset, whereas Off sustained (Off S) cells exhibited tonic firing before and after a light step (Fig. 1A).

1.

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Functional Identification of Ganglion Cell Types. A, Cell-attached recording of APs evoked in On, Off T, and Off S cells by a 500 ms step that generated ∼10 Rh*/Rod/Sec. B, Excitatory (black, Vm = −75 mV) and inhibitory (gray, Vm= +10 mV) postsynaptic currents evoked by the same stimulus.

To characterize light-evoked excitatory and inhibitory synaptic input to each cell type, we performed whole cell voltage clamp recordings (Fig. 1B). We isolated inhibitory postsynaptic currents (IPSCs) by recording at the reversal potential for excitatory synaptic currents (EPSCs; +10 mV), and isolated EPSCs by recording near the reversal potential for IPSCs (−75 mV). Light steps produced distinctive patterns of excitatory and inhibitory synaptic input in On, Off transient and Off sustained cells. The large somata and characteristic light responses enabled us to easily distinguish these three cell types from each other and from other RGC types.

Isolation of signals traversing the rod bipolar pathway

Signals generated in mammalian rods by dim light stimuli are conveyed to ganglion cells via at least three pathways (Fig. 2A; reviewed by Bloomfield and Dacheux, 2001): (1) the rod bipolar pathway (rod -> rod bipolar -> AII amacrine -> On and Off cone bipolar terminals); (2) rod -> (via gap junction) cone -> cone bipolar cells; and (3) rod -> a subset of Off cone bipolar cells. We identified stimulus conditions under which the rod bipolar pathway provided the dominant synaptic input to RGCs by using the mGluR6 agonist APB (Volgyi et al., 2004); responses in Off RGCs generated by the rod bipolar pathway (Fig. 2A, gray) should be abolished by blocking synaptic signaling between rods and rod bipolar cells with APB, while responses generated by stimuli that activate multiple pathways should be at least partially APB-insensitive.

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Stimuli Generating ≤ ∼2.5 Rh*/Rod/Sec Elicit Signals in RGCs via the Rod Bipolar Pathway. A, Schematic of the retina. The rod bipolar pathway is highlighted in gray. AII = AII Amacrine Cell; RBC = Rod Bipolar Cell B1, Cell-attached recording of spikes generated in an Off transient cell by light stimuli producing ∼2.5 and ∼12.5 Rh*/Rod/Sec in the absence (Con) and presence of the mGluR6 agonist L-APB (10 μM). B2, Ratio of the number of spikes in the presence and absence of APB. C1, Whole cell voltage clamp (Vm= −70 mV) recording of the excitatory postsynaptic current (EPSC) in an Off transient cell evoked by light stimuli producing ∼2.5 and ∼12.5 Rh*/Rod/Sec under control conditions (Con) and in the presence of APB C2, Ratio of synaptic current variance in the presence and absence of APB.

APB (10-20 μM) almost completely eliminated spikes generated by stimuli producing ∼2.5 Rh*/Rod/Sec and decreased but did not eliminate responses to higher intensity stimuli (Fig. 2B). Light-evoked EPSCs measured via whole-cell voltage-clamp recordings exhibited a similar sensitivity to APB; the EPSC variance in APB was < 2% of that under control conditions for stimuli generating ∼2.5 Rh*/Rod/Sec (Fig. 2C). These experiments indicate that the rod bipolar pathway provides the dominant input to RGCs when light stimuli produce ≤ 2.5 Rh*/Rod/Sec.

Signals carried by the rod bipolar pathway evoke temporally precise APs

To measure the temporal precision of APs generated by signals traversing the rod bipolar pathway, we recorded RGC responses to repeated presentations of a fluctuating full-field light stimulus that generated ∼2.5 Rh*/Rod/Sec. Both 25% (Fig. 3A1; top) and 50% (Fig. 3A1; middle) contrast stimuli generated qualitatively reproducible bursts of APs. We quantified temporal precision using two complementary approaches.

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Input Provided by the Rod Bipolar Pathway Evokes Spikes With High Temporal Precision. A1, Light stimulus and raster plots of spike times during 15 consecutive trials for 25% (top) and 50% (middle) contrast stimuli producing 2.5 Rh*/Rod/Sec and 50% contrast stimuli producing 12.5 Rh*/Rod/Sec (bottom). Open circles at the base of each raster plot identify the bursts selected for analysis. A2, Expanded view of spike times in one burst across stimulus conditions. Burst time noted by arrow in A1. A3, Average standard deviation of the first spike time evoked by different mean and/or contrast stimuli in Off transient RGCs. Lines connect data recorded in the same cell. The average number of spikes in bursts selected for analysis was 10.1 ± 0.2 , 8.9 ± 0.2, and 5.7 ± 0.2 in On, OffT, and OffS cells, respectively. The mean interspike interval of these spikes was 3.78 ± 0.04 ms , 4.54 ± 0.13 ms, and 4.51 ± 0.13 ms, respectively. B, Two operations in the spike distance metric enable a spike in one spike train to be paired with a spike in another spike train. The first operation (top) shifts (--->) a spike in one spike train until it occurs at the same time as a spike in the other train, incurring a distance of (Δt *cost). The second operation (bottom) removes (Ø) a spike from one spike train and adds (↓) a spike at the appropriate time, incurring a distance of 2. C1, When the cost of shifting spikes in time is low (0.02; max Δt shift = 100 ms), the total spike distance is minimized when all spikes are paired via shifting (despite the large Δt between some paired spikes). C2, When the cost of shifting spikes in time is high (0.2; max Δt shift = 10 ms), the spike distance is minimized by pairing spikes in one train with their nearest neighbor in the other spike train (in spite of the distance associated with removing/adding a spike). Note that the number of spikes paired via the shifting operation decreases as the cost of shifting spikes in time increases, and the Δt values for spikes paired via the shifting operation would not change if the distance associated with removing/replacing a spike was different. D, Cumulative probability distribution of Δt values for On (black), Off T (blue), and Off S (green) cells computed with cost = 0.025 (max Δt shift = 80 ms). The stimulus mean and contrast (∼2.5 Rh*/Rod/Sec, 50%) was identical across cell types. Top left inset; Relationship between median calculated Δt and the range over which spikes in one train could be shifted to match a spike in another train. The spike pairing algorithim removes/replaces a spike when Δt *cost ≥ 2; thus max Δt shift = 2/cost. Bottom right inset; mean standard deviation of the first spike time in select bursts in the same cells.

To facilitate comparison with previous studies, we measured the standard deviation of the time of the first spike in selected bursts (Berry et al., 1997; Uzzell and Chichilnisky, 2004). Variability of the first spike time in bursts which (1) were preceded by ≥40 ms of quiescence and (2) contained a spike in ≥90% of trials (Fig 3A1, open circles) decreased as the stimulus contrast and/or mean increased (Fig. 3A3). The standard deviation of the first spike time ranged from 2-10 ms across bursts, a small fraction of the 300-500 ms duration of rod photoreceptor responses (Field and Rieke, 2002).

A fundamental problem with measures of spike timing precision is deciding which spikes should be compared across trials. The method used above circumvents this difficulty by considering the variability of a small number of easily identified spikes - i.e. the first spike in a subset of bursts. This approach is somewhat unsatisfactory, however, since the identified spikes represent < 5% of the total spikes, and these spikes do not necessarily have a privileged role in the cortical readout of RGC activity.

The spike distance metric (Victor and Purpura, 1996) enables a complementary measure of spike timing precision without any ad hoc matching of spikes between responses or selection of relevant spikes. The metric defines the distance between a pair of spike responses by converting one response into the other through two operations: (1) shifting a spike in time (Fig. 3B, top path); and (2) deleting a spike and/or adding a new one (Fig. 3B, bottom path). The distance associated with shifting the spike in time is Δt * cost, where Δt is the time shift and cost is a variable. The distance associated with removing or adding a spike is defined as 1; the analysis described below is insensitive to the value of this parameter.

The decision of which operation to use is based on minimizing the distance - i.e. if Δt * cost < 2 the spike pairing algorithm inherent in the metric will shift one spike (top path in Figure 3B), whereas if Δt * cost > 2 a spike will be deleted/added (bottom path in Figure 3B). Thus, for a given cost, the spike distance metric identifies the spike pairings that minimize the total distance, and the temporal precision of those spikes that are aligned by shifting one spike in time can be quantified from histograms of the corresponding Δt values. When the cost of shifting spikes is low, the spike distance is minimized when nearly all spikes are paired via the shifting operation (Fig. 3C1). When thecost of shifting spikes in time is high, however, the spike distance is minimized by pairing some spikes via the remove/replace operation (Fig. 3C2).

We used this approach to characterize the temporal precision of light-evoked APs in three types of functionally-identified mouse RGCs (see Fig. 1). The distribution of Δt values derived from each pairwise comparison of recorded spike trains was calculated for a given cost; we varied the cost systematically such that the maximum Δt over which spikes could be paired via the shifting operation ranged from 10 to 200 ms. As expected, the median of the histogram of Δt values decreased as the range over which spikes could be shifted decreased (Fig. 3D, top left inset), with a precipitous drop when the maximum Δt shift decreased below 50 ms. Thus, we compared the average cumulative distributions of Δt values derived from histograms in which spikes could be shifted by ≤ 80 ms (Fig. 3D); to a reasonable approximation this range of Δt values permits spikes within corresponding bursts to be paired via the shifting operation but does not permit pairing of spikes across bursts. This procedure paired >85% of the spikes via the shift operation – i.e. this approach quantified the temporal precision of > 85% of the light-evoked spikes in each RGC type.

The median Δt of spikes aligned via the spike distance metric was 4-5 ms (Fig. 3D), a few percent of the duration of rod photoreceptor responses. Both this measure of temporal precision, and the standard deviation of the first spike time (Fig. 3D, bottom right inset), indicate that dim light stimuli generate APs with greater temporal precision in On cells relative to Off cells. Both measures indicate that input provided by the rod bipolar pathway generates temporally-precise APs despite the slow kinetics of the signals upon which these inputs are based.

Differences in synaptic input to On and Off RGCs

What excitatory and inhibitory synaptic conductances do dim light stimuli generate in each identified RGC type, and how does the integration of this synaptic input control the pattern and temporal precision of spike generation? To answer these questions we measured excitatory (gexc) and inhibitory (ginh) synaptic conductances evoked by fluctuating light stimuli that generated ∼2.5 Rh*/Rod/Sec in each RGC type. As described below, the relative magnitude and timing of gexc and ginh varied substantially among RGC types. In the sections that follow we determine the impact of these differences on spike generation.

We derived gexc from synaptic currents measured at a holding potential of −75 mV, where there was little driving force for GABA/glycine receptor-mediated currents. Similarly, we derived ginh from synaptic currents recorded at +10 mV, where there was little driving force for AMPA/KA/NMDA receptor-mediated currents. Synaptic currents measured at intermediate voltages were predicted accurately by summing the derived excitatory and inhibitory currents - i.e. the conductances weighted by the driving force (see Experimental Procedures); thus gexc and ginh were isolated effectively.

Light-evoked synaptic conductances in all three RGC types were large - often exceeding 20 nS. The peak gexc (22.2 ± 2.0 nS) in On cells was more than 3-fold larger than peak ginh (7.11 ± 0.9 nS; Fig. 4A1-A3). The opposite was true in Off transient and Off sustained cells, where ginh was more than 5-fold larger than gexc (Fig. 4A1-A3).

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The Magnitude and Timing of Excitatory and Inhibitory Synaptic Input to On and Off RGCs is Distinct. A1, A segment of the average excitatory (black) and inhibitory (gray) synaptic conductances generated by a fluctuating light stimulus in an On (top), Off T (middle), and Off S (bottom) cell. A2, Mean peak excitatory (closed bars) and inhibitory (open bars) synaptic conductance for each RGC type (n= 7, 8, and 8). A3, Mean ratio of peak excitatory synaptic conductance to peak inhibitory synaptic conductance for each RGC type. B1, Normalized excitatory (black) and inhibitory (gray) synaptic conductances from the corresponding cell in A1. Traces at the top of each panel are cell-attached recordings of spikes evoked by the same stimulus in the same cell. B2, Cross correlation between the excitatory and inhibitory synaptic conductances for individual On (black), Off T (blue), and Off S cells (green).

The temporal relationship between excitatory and inhibitory synaptic input also differed in On and Off cells. gexc and ginh had a similar time course in On cells, with inhibitory synaptic input slightly delayed relative to excitatory synaptic input (Fig. 4B1, top). For both Off transient and Off sustained cells, excitatory and inhibitory synaptic inputs were almost perfectly out of phase (Fig. 4B1, middle/bottom). We quantified the relative timing of excitatory and inhibitory synaptic input by computing the cross-correlation between the average gexc and ginh for individual RGCs. For On cells, the cross-correlation exhibited a strong positive peak at −16.4 ± 4.7 ms (n=7; Fig. 4B2); the large negative peak of the cross-correlation between gexc and ginh in Off sustained and Off transient cells was offset slightly in the opposite direction (6.1 ± 4.4 ms; p<0.001, n=16). The positive correlation between gexc and ginh, and the delay of ginh relative to gexc, observed in On cells is expected for feedforward inhibition mediated by amacrine cells -i.e. with inhibition provided by an amacrine cell that is itself postsynaptic to the On cone bipolar terminals that provide excitation to the RGC. The strong anticorrelation between gexc and ginh in Off cells, however, indicates that synaptic excitation and inhibition in the circuit providing input to Off RGCs operate in a push-pull fashion. We propose a basis for these timing differences in the Discussion.

Reversal potential and source of inhibitory synaptic input to On and Off cells

The effect of inhibitory conductances on spike generation depends on the reversal potential for inhibitory inputs. To test the possibility that inhibitory synaptic inputs are hyperpolarizing in some of the identified RGC types and shunting or depolarizing in others we determined the effect of exogenous glycine in cell-attached and perforated-patch recordings. These experiments, unlike the experiments presented in Figure 4, permitted a cell to retain its normal complement of intracellular chloride. Brief pressure application of glycine to the soma transiently decreased the rate of AP generation in each RGC type (Fig. 5A1). Furthermore, application of glycine hyperpolarized each RGC type to near −80 mV in perforated-patch recordings using the Cl impermeant ionophore gramicidin (Fig. 5A2; Rhee et al., 1994; Ding and Perkel, 2002). Thus glycine receptor-mediated conductances hyperpolarize each identified RGC, and differences in the reversal potential for inhibitory inputs are unlikely to produce substantial differences in synaptic integration between On and Off cells.

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Reversal Potential and Postsynaptic Receptors Governing Inhibitory Synaptic Input. A1, Cell-attached recordings of APs following a step change in light intensity (top) or pressure application of glycine (100 μM, 10 ms pulse; bottom) to the soma of each RGC type. The gray line above each trace plots light intensity (relative to darkness, shown schematically as the dashed black line). A2, Effect of glycine on voltage of each RGC type measured in perforated-patch recordings with gramicidin. B, Effect of the GABAA receptor antagonist bicuculline (BMI; 10 μM) and/or glycine receptor antagonist strychnine (Stry; 1 μM) on light-evoked inhibitory postsynaptic current (IPSC; Vm=+10 mV) in On (left column), Off transient (middle column), and Off sustained (right column) RGCs.

Although inhibitory input hyperpolarized each RGC type, the source of inhibition differed between On and Off cells. We determined the contributions of light-evoked GABAergic and glycinergic input by measuring the sensitivity of inhibitory synaptic currents measured at +10 mV to the GABAA receptor antagonist bicuculline and glycine receptor antagonist strychnine at concentrations where each drug acted relatively specifically (≤10 uM bicuculline, ≤1 uM strychnine; see Protti et al., 1997; Jonas et al., 1998). Inhibitory synaptic input to On cells was almost completely suppressed by bicuculline (Fig. 5B) and only modestly affected by strychnine (data not shown), indicating that On cells receive predominantly GABAergic inhibition. Inhibitory input to Off transient and Off sustained cells was almost completely blocked by strychnine and relatively unaffected by bicuculline (Fig. 5B), indicating that these RGC types receive predominantly glycinergic inhibition. We discuss the possible circuitry responsible for these differences in the source of inhibition in the Discussion.

Roles of excitatory and inhibitory synaptic conductances in shaping spike output

Consistent with previous results (Pang et al., 2003; Zaghloul et al., 2003; Roska et al., 2006), On cells exhibited high firing rates when both excitatory and inhibitory synaptic conductances were active (Fig. 4B1, top), while Off cells exhibited high firing rates when excitatory synaptic conductances were active and inhibitory synaptic conductances were minimal (Fig. 4B1, middle/bottom). These differences suggest differences in the way in which synaptic conductances are integrated to control spike generation.

To test directly how differences in the amplitude and timing of excitatory and inhibitory synaptic input govern RGC spike generation, we injected light-evoked gexc and/or ginh using the conductance clamp technique (Robinson and Kawai, 1993; Sharp et al., 1993). When the time-varying gexc (or ginh) was injected alone, the time-invariant mean of ginh (or gexc) was also injected to keep the cell's resting potential constant across conditions. In On cells, the pattern of spikes generated by gexc alone was almost identical to that produced by gexc and ginh together; ginh alone produced little modulation in spiking (Fig. 6A1, left column). In Off cells, however, somatic injection of gexc alone generated unusually brief bursts of APs, while somatic injection of ginh alone generated bursts of unusually low frequency APs (Fig. 6A1, center/right columns), relative to APs evoked by gexc and ginh together. Thus in Off cells, decreased inhibitory input permitted spike bursts while concomitant increased excitatory input shaped firing within the burst.

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Synaptic Inhibition Shapes Response to Light Stimuli in Off, but Not On, RGCs. A1, Pattern of APs evoked by somatic injection of the cell-appropriate excitatory synaptic conductance (blue; top row), inhibitory synaptic conductance (green, middle row), or excitatory and inhibitory synaptic conductances (red, bottom row). A2, The distribution of interspike intervals (ISI) for spikes generated by excitatory, inhibitory, and excitatory+inhibitory synaptic conductance injection. The ISI distributions shown in black are from light-evoked spike trains recorded in the cell-attached configuration in the absence of synaptic receptor antagonists. The light-evoked ISI distribution and the synaptic conductance waveforms were measured for identical stimuli. For On cells, the mean squared error (MSE) between both the gexc(blue) and gexc+ ginh (red) ISI distribution and the light-evoked distribution was significantly less than that between the light-evoked distribution and the ginh (green) distribution (p<0.02). For Off cells, the MSE between the gexc+ ginh distributions was significantly less than that between either the gexc or ginh ISI distribution and the light-evoked distribution (p<0.015, n=10). A3, The cumulative probability distribution of Δt values for APs evoked by gexc (blue), ginh (green), gexc and ginh (red). Experiments in B were performed in the presence of NBQX (5-10 μM), MK-801 (10 μM), and strychnine (10-20 μM). Strychnine at this concentration blocks both GABAA and glycine receptors (Jonas et al., 1998; Protti et al., 1997).

We used two approaches to quantify the impact of excitatory and inhibitory synaptic conductances on spike generation in On and Off cells. First, we calculated interspike interval (ISI) distributions for each cell type and each condition (Fig. 6A2). In On cells, the ISI distribution produced by injection of time-varying gexc alone (Fig. 6A2, left column, blue) was indistinguishable from that generated by injecting time-varying gexc and ginh (red; p>0.4; Kolmogorov-Smirnov test); both distributions were more similar to the ISI distribution of APs evoked directly by light stimuli (black) than the ISI distribution of APs evoked by ginh alone (green). In Off cells, only the distribution of interspike intervals evoked by somatic injection of gexc and ginh together (red) resembled the distribution of interspike intervals for spikes evoked by fluctuating light stimuli (black).

Second, we used the spike pairing algorithm inherent in the spike distance metric (Victor and Purpura, 1996) to quantify the impact of gexc and ginh on the temporal precision of spike generation. Figure 6A3 shows cumulative Δt distributions for each cell type and condition. In On cells the cumulative Δt distribution of APs generated by injecting gexc alone was indistinguishable from that produced by gexc and ginh together (p>0.63; Kolmogorov-Smirnov test). However, the temporal precision of APs evoked in Off transient cells by gexc+ ginh exceeded that of APs evoked by ginh alone (p<0.004), while in Off sustained cells the precision of APs evoked by gexc + ginh was greater than spikes evoked by either gexc (p<0.001) or ginh (p<0.003) alone. Together, these results indicate that synaptic inhibition shapes the responses of Off cells much more than those of On cells, and that simultaneous decreases in synaptic inhibition and increases in synaptic excitation facilitate precise spike timing in Off RGCs.

Noise in spike generation does not limit temporal precision of APs evoked by dim light stimuli

The temporal precision of RGC responses could be limited either by noise in a cell's synaptic inputs or intrinsic noise in either dendritic processing or spike generation. In pyramidal neurons, somatic injection of rapidly fluctuating current in the absence of synaptic input generates APs with high temporal precision (Mainen and Sejnowski, 1995), suggesting that spike generation contributes minimally to response variability. However, the mechanisms governing spike generation depend critically on the properties of synaptic input (Chance et al., 2002; Mitchell and Silver, 2003; Azouz and Gray, 2003; Shu et al., 2003; Zsiros and Hestrin, 2005), and the characteristics of physiological synaptic input are not known in most neurons. To determine the contribution of variability in spike generation under physiological conditions, we compared the temporal precision of spikes evoked directly by dim light stimuli with that of spikes elicited by somatic injection of light-evoked synaptic conductances.

Under control conditions, the pattern of APs evoked by a fluctuating light stimulus that generated ∼2.5 Rh*/Rod/Sec resembled closely that generated in the dark by repeated somatic injection of the average excitatory and inhibitory synaptic conductances evoked by the same stimulus in the same cell type (Fig. 7A1, 7B1). In On cells, the distribution of Δt values for APs evoked by gexc + ginh in darkness was shifted to the left of light-evoked APs (Fig. 7A2). In Off cells, the median Δt of light- and conductance-evoked APs was indistinguishable (p>0.67) under these conditions. Blocking glutamatergic, GABAergic, and glycinergic synaptic input had little effect on the overall pattern of APs evoked by somatic injection of synaptic conductances (Fig. 7A1, 7B1), but decreased substantially the median Δt in both On (p<0.03) and Off (p<0.001) RGCs (Fig. 7A2, 7B2).

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The Temporal Precision of APs Evoked by High Contrast Stimuli is Not Limited by Noise in Spike Generation. A1, Top, Cell-attached recording of APs generated by an On cell in response to three consecutive trials of a fluctuating light . Middle, Three traces, from the same cell, of APs evoked in the dark by injecting the cell type-appropriate excitatory and inhibitory synaptic conductances. The synaptic conductances, gexc and ginh, and the APs shown in A1, were evoked by the same stimulus. Bottom, Same as A1 (middle), except in the presence of NBQX (10 μM), MK-801 (10 μM), and strychnine (20 μM). A2, The cumulative probability distribution of Δt values for APs evoked by light stimuli (open circles), gexc + ginh under control conditions (black line), and gexc + ginh in the presence of glutamate, GABA, and glycine receptor antagonists (closed circles). B, same as A, except for Off cells.

The low temporal variability of the conductance-evoked APs in the absence of synaptic input indicates that noise in the intrinsic mechanisms governing spike generation in the RGC types studied contributes little to the temporal variability of responses to this light stimulus. The increased variability of conductance-evoked APs in the presence of synaptic input indicates that background synaptic activity poses a significant limitation on temporal precision. Because the conductance-injection experiments of Figure 7 were performed in darkness, they likely underestimate the importance back-ground synaptic activity in On cells and overestimate its importance in Off cells. We return to this issue in the Discussion.

The temporal variability of light-evoked APs increases as stimulus contrast decreases (Fig. 3A3; Berry et al., 1997; Uzzell and Chichilnisky, 2004), and noise in the mechanisms governing spike generation may limit detection of low contrast stimuli (Dhingra and Smith, 2004). Could intrinsic noise contribute to variability when light stimuli produce smaller and slower changes in the membrane potential? To answer this question we first compared the amplitude and kinetics of light-evoked excitatory and inhibitory synaptic conductances for 10, 25 and 50% contrast stimuli. As expected, lower contrast stimuli produced smaller and more slowly varying changes in gexc and ginh in each RGC type (Supp. Fig. 1).

To test directly whether variability in spike generation limited the precision of responses evoked by lower contrast stimuli, we compared the temporal precision of APs evoked by somatic injection of synaptic conductances corresponding to high, medium, and low contrast light stimuli in the presence of glutamate, GABA, and glycine receptor antagonists. The overall pattern of APs generated by high (50%) and low (10%) synaptic conductances in a given cell was similar (Fig. 8A1). Consistent with results from cell-attached recordings of light-evoked AP generation, the low contrast excitatory and inhibitory synaptic conductances generated more APs in On cells, and fewer APs in Off cells, compared to the high contrast excitatory and inhibitory synaptic conductances (Fig. 8A1).

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Spike Generation does not Limit Temporal Precision of APs evoked by High or Low Contrast Stimuli. A1, Each panel shows three consecutive responses produced by somatic injection of the excitatory and inhibitory synaptic conductance waveforms evoked by 50% (top), or 10% (bottom) contrast stimuli for each RGC type. The 10% synaptic conductance waveforms were generated by convolving the synaptic conductances evoked by 50% contrast stimuli with the appropriate filter (from supplementary Fig. 1B). A2, The cumulative probability distribution of Δt values for spikes evoked by 50% (black), 25% (blue), and 10% (green) contrast conductance waveforms in an RGC of each type. For each cell type, the dashed gray line shows the average cumulative Δt distribution for spike responses evoked directly by 50% contrast light stimuli (from Fig. 3). All conductance-clamp experiments in this figure were performed in the presence of NBQX (5-10 μM), MK-801 (10-20 μM), and strychnine (10-20 μM).

The temporal precision of APs generated by the injected synaptic conductances decreased as the contrast of the stimulus evoking the synaptic conductances decreased (Fig. 8A2). However, the temporal precision of APs evoked by even the lowest (10%) contrast synaptic conductances was greater than that for spikes evoked directly by high contrast light stimuli (Fig. 8A2, gray dashed lines) in each On, Off transient, and Off sustained RGC examined (n= 4,3, and 3, respectively). These results show that noise in spike generation does not limit the temporal precision of APs evoked by high or low contrast stimuli with a mean ∼2.5 Rh*/Rod/Sec in each type of identified RGC.

Temporal variability of light-evoked APs reflects variability in network input

The results presented thus far indicate that variability in the mechanisms governing spike generation do not contribute significantly to the variability of light-evoked activity in each identified RGC type. Two observations suggests that active dendritic properties are not required to generate precisely timed APs: (1) somatic injection of light-evoked synaptic conductances closely mimicked the pattern and temporal precision of responses evoked by light stimuli; and (2) hyperpolarizing RGCs in current clamp did not reveal any light-evoked ‘spikelets’ or other signatures of active dendritic processing (e.g.,Oesch et al., 2005; data not shown). Therefore, we tested directly the possibility that trial-to-trial variability in synaptic input to RGCs (Fig. 9A) limits the temporal precision of light-evoked AP generation.

9.

9

Variability in Synaptic Input Limits Spike Timing Precision. A, gexc evoked on three consecutive trials by dim fluctuating light stimuli in an On (left) and Off S (right) RGC. B1, Top, APs evoked in three separate trials by the same pair of excitatory and inhibitory synaptic conductance waveforms. Bottom, APs evoked on three separate trials in the same cell by three unique pairs of excitatory and inhibitory synaptic conductance waveforms. B2, The cumulative probability distribution of Δt values for APs evoked by repeatedly injecting the same pair of individual excitatory and inhibitory waveforms (thin line), repeatedly injecting the average excitatory and inhibitory synaptic conductance (open circle), injecting random pairings of individual excitatory and inhibitory synaptic conductance waveforms (thick line), and light stimuli (closed circles; from Fig. 3). All conductance clamp experiments were performed in the presence of AMPA/KA, NMDA, Glycine, and GABAA receptor antagonists.

In these experiments we injected individual, rather than averaged, synaptic conductance waveforms recorded on consecutive trials from a single cell of each type. We alternated trials using the same pair of measured individual excitatory and inhibitory synaptic conductances (Fig. 9B, Fixed gexc+ginh) with trials where we injected single randomly selected excitatory and inhibitory synaptic conductance waveforms recorded from the same cell (Fig. 9B, Vary gexc+ginh). These experiments were performed with glutamatergic, GABAergic, and glycinergic synaptic input blocked, but variability from both background and light-evoked synaptic input contributed to the individual measured conductance waveforms. These experiments, therefore, determined the impact of trial-to-trial variability in a cell's synaptic inputs on the temporal precision of AP generation.

As expected, the median Δt of spikes evoked by repeated injection of the same pair of individual conductance waveforms (Fig. 9B2, thin line) and the average synaptic conductances (open circles) was indistinguishable in both On (p>0.77; n=5) and Off cells (p>0.78, n=5). However, the temporal precision of APs evoked by individual conductance waveforms that varied from trial to trial (Fig. 9B2; thick black line) was reduced, nearly mimicking the precision of spikes evoked directly by light stimuli in separate experiments (closed circles, from Fig. 3). These results indicate that the measured trial-to-trial variability in synaptic input provided by the rod bipolar pathway underlies the trial-to-trial variability of light-evoked AP generation in each identified RGC type.

Discussion

Previous attempts to understand the processes governing variability of light-evoked responses fall into two broad categories. The first approach has been to infer the pattern and variability of synaptic input, and the way in which this synaptic input is integrated, from the responses to sensory stimuli (Gabernet et al., 2005; Pillow et al., 2005; Wehr and Zador, 2003; Azouz and Gray, 2003; Keat et al., 2001). The second approach has been to identify synaptic and cellular mechanisms that facilitate the temporal precision of spikes evoked by electrical stimulation in brain slices (Pouille and Scanziani, 2001; Galarreta and Hestrin, 2001; Blitz and Regehr, 2005; Bacci and Huguenard, 2006). We have used the mammalian retina to examine in parallel the temporal precision of light-evoked APs, and the synaptic and cellular mechanisms governing this precision. This approach enabled us to (1) uncover a profound difference in the way in which excitatory and inhibitory synaptic input governs light-evoked activity in On and Off retinal ganglion cells, and (2) demonstrate directly that the temporal variability of light-evoked AP generation is a consequence of variability in synaptic input.

Amplitude, timing, and origin of RGC synaptic conductances

The neural circuits that govern light-evoked AP generation are often too complicated, intractable, or incompletely understood to test directly the contribution of stimulus, network, and/or intrinsic variability to response variability. We circumvented this problem by identifying lighting conditions under which the vast majority of synaptic input to three functionally-identified types of mouse RGCs was provided by a relatively well-characterized circuit in the retina - the rod bipolar pathway. These stimuli generated reproducible and temporally-precise patterns of APs in each RGC type. However, dim light stimuli generated much larger excitatory than inhibitory synaptic input in On cells and much larger inhibitory than excitatory synaptic input in Off cells. Furthermore, the relative timing of light-evoked excitatory and inhibitory synaptic input to On and Off cells differed profoundly; gexc and ginh were highly correlated in On cells, and almost perfectly anti-correlated in Off cells. These results are consistent with recent data suggesting that light stimuli govern AP generation in On and Off alpha and parasol RGCs via unique neural circuits (Chichilnisky and Kalmar, 2002; Pang et al., 2003; Zaghloul et al., 2003; Roska et al., 2006), although it is not clear that the On, Off transient, and Off sustained cells we examined comprise a single class of ganglion cell.

What is the basis for these differences? Anatomical evidence suggests that AII amacrine cells form glycinergic synaptic contacts with Off cone bipolar synaptic terminals and the dendrites of Off, but not On, ganglion cells in the mammalian retina (Famiglietti and Kolb, 1975; Kolb, 1979; Strettoi et al., 1992; Owczarzak and Pourcho, 1999). Indeed, inhibitory input to Off sustained and Off transient RGCs, but not On RGCs, was predominantly glycinergic. These observations suggest that the large light-evoked inhibitory synaptic input to both Off transient and Off sustained RGCs is mediated by AII amacrine cells. This interpretation is consistent with the strong correlation between ginh in Off transient and Off sustained cells (0.85 ± 0.08) and the temporal relationship between gexc and ginh in Off RGCs; depolarizing an AII amacrine cell would cause an increase in direct inhibitory input to Off RGCs and a concomitant decrease in the glutamatergic input provided by synaptically coupled Off cone bipolars. This interpretation is also consistent with the observation that light-evoked gexc in On cells was strongly correlated with ginh in Off cells (peak=0.875 ± 0.08; see Fig. 3A1), although we cannot exclude the possibility that that synaptic inhibition in Off RGCs is provided by a glycinergic amacrine cell that is postsynaptic to On cone bipolar cells.

Quantification of temporal precision

We employed several complementary approaches to describe the temporal precision of RGC spike generation. The first approach, based on previous studies (Berry et al., 1997; Uzzell and Chichilnisky, 2004), characterized the standard deviation of the time at which the first spike occurred in a subset of light-evoked bursts. This method provides an intuitive and easily quantifiable measure of temporal precision, but it assumes that variability of the first spike is either representative, or more important, than that of other spikes. The second approach used the spike pairing algorithm inherent in the spike distance metric (Victor and Purpura, 1996). This approach offers several distinct advantages. First, the algorithm quantifies the precision of the majority (85-95%) of spikes evoked by dim light stimuli. Second, the rules governing how spikes are paired can be controlled in an explicit (and parametric) manner, making clear how details of the pairing influence conclusions.

Both measures indicated that signals traversing the rod bipolar pathway evoked spikes in each of the three identified RGC types with a temporal precision of 2-10 ms. This precision is about 50-fold greater than the ∼300 msec integration time of the rod photoreceptor responses, and is similar to the precision of APs evoked by light stimuli ≥1000 times brighter (Berry et al., 1997; Uzzell and Chichilnisky, 2004). Thus the circuitry of the rod bipolar pathway exploits the low noise of the rod responses and convergence to generate temporally precise responses from the relatively sluggish rod inputs.

Using light-evoked synaptic conductances to control AP generation

Previous attempts to understand the role of direct inhibitory synaptic input onto ganglion cells have compared the response to light stimuli in the absence and presence of GABA and/or glycine receptor antagonists (e.g., Roska et al., 1998; Olveczky et al., 2003; Ishikane et al., 2005). This approach blocks GABA and glycine receptors on ganglion cells as well as on the cells presynaptic to ganglion cells (reviewed in Wassle et al., 1998; Grunert, 2000), making interpretation of effects difficult. We used somatic injection of light-evoked synaptic conductances to test how excitatory and inhibitory synaptic input governs the pattern and temporal precision of RGC spike generation. This strategy enabled us to manipulate excitatory and inhibitory synaptic input independently. We found that the pattern and temporal precision of spikes evoked by somatic injection of gexc alone did not differ substantially from that elicited by gexc and ginh together in On RGCs. In Off sustained and Off transient RGCs, however, only the pattern of spikes generated by gexc and ginh together resembled that evoked by light stimuli, and the temporal precision of APs generated by gexc + ginh was greater than that of APs evoked by either gexc or ginh alone. These results indicate that On and Off cells employ unique strategies to facilitate spike timing precision. Precise AP generation in On cells is produced by large changes in excitatory synaptic conductances. Precise AP generation in Off cells is facilitated by dynamic changes in excitatory and inhibitory synaptic conductances, with a decrease in inhibition permitting the cell to generate a burst of spikes, and a concomitant increase in excitation shaping the pattern of spikes during the burst.

The ability of responses generated by somatic injection of light-evoked synaptic conductances to mimic light-evoked responses depends critically on (at least) two assumptions: (1) voltage-dependent properties of the dendrites do not significantly alter the impact of the conductance at the soma, and (2) we measure the synaptic conductances that are most critical for governing the cell's output. We looked for, but did not find, light-evoked ‘spikelets’ or other signatures of regenerative dendritic processes like those observed recently in direction-selective RGCs (Oesch et al., 2005). The light-evoked excitatory synaptic conductances we recorded and injected, however, may have lacked a NMDA receptor-mediated component; at −75 mV, where we measured light-evoked excitatory synaptic currents, NMDA receptors are generally blocked by extracellular Mg2+ (Mayer et al., 1984; Nowak et al., 1984). In the presence of GABA and glycine receptor antagonists, EPSCs evoked by light and/or electrical stimuli are reduced by NMDA receptor antagonists (Diamond and Copenhagen, 1993, 1995; Hensley et al., 1993; Matsui et al., 1998), demonstrating conclusively that synaptically released glutamate can evoke NMDA receptor-mediated conductances in RGCs. It is unclear, however, to what extent these conductances contribute under physiological conditions. We found that light-evoked synaptic currents measured at −30 mV were predicted accurately by the weighted sum of synaptic conductances recorded at −75 mV (gexc) and +10 mV (ginh; see Experimental Procedures). This suggests that NMDA receptor-mediated conductances in the three identified RGC types we studied contribute very little and/or are accurately reflected by synaptic currents measured at −75 mV.

Variability of RGC spike generation reflects variability of synaptic input

The effect of network and intrinsic noise on the precision of spike generation has caused considerable debate and controversy for more than a decade (Softky and Koch, 1993; Shadlen and Newsome, 1994). In the absence of network noise, somatic injection of fluctuating current evokes APs that exhibit high temporal precision in cortical pyramidal neurons (Mainen and Sejnowski, 1995), suggesting that the variability of light-evoked responses reflects variability in the synaptic input a cell receives. However, the intrinsic mechanisms governing spike generation and synaptic integration can change as properties of the input change (Chance et al., 2002; Mitchell and Silver, 2003; Azouz and Gray, 2003; Shu et al., 2003; Zsiros and Hestrin, 2005), and neither the baseline nor stimulus-evoked synaptic input to most neurons is well-understood. We found that APs generated by somatic injection of light-evoked synaptic conductances in the absence of synaptic input had a much higher precision than light-evoked APs. This result held true for injected synaptic conductances elicited by high (50%) or low (10%) contrast stimuli. Thus, for the stimuli tested, noise in spike generation does not limit temporal precision in any of the three identified RGC types studied.

What noise sources govern the reproducibility of light-evoked RGC responses? Temporal precision was similar for APs evoked directly by light stimuli and for APs evoked, in the absence of synaptic input, by somatic injection of measured synaptic conductances that vary from trial to trial. This similarity indicates that the noise governing the temporal precision of light-evoked APs is a feature of the network through which light-evoked signals propagate. Our results, however, do not determine the relative contribution of variability in synaptic inputs evoked by constant and time-varying light stimuli with the same mean intensity. The temporal precision of APs evoked in darkness by somatic injection of measured synaptic conductances suffered in the absence of synaptic receptor antagonists (Fig. 5), indicating that background synaptic activity can influence the temporal precision of AP generation. However, examining the effect of synaptic input in the dark on APs evoked by somatic injection of synaptic conductances likely underestimated the impact of background synaptic variability on APs evoked in On cells since synaptic input to these cells increases as light intensity increases. It is similarly difficult to interpret the role of background input on Off cells because variability in their synaptic input likely decreases as light intensity increases.

We have focused on conditions under which signals traversing the rod bipolar pathway dominate. Examining properties of light-evoked responses in the cells pre-synaptic to RGCs in this circuit will enable us to identify and manipulate the processes that facilitate reproducible and temporally-precise responses to dim light stimuli in the early visual system.

Experimental Procedures

Tissue Preparation

Mice (c57/BL6, 6-8 weeks old) were dark adapted overnight and sacrificed according to protocols approved by the Administrative Panel on Laboratory Animal Care at the University of Washington. After hemisecting each eye, we removed the vitreous mechanically and stored the eyecup in a light-tight container in warm (∼32° C), bicarbonate-buffered Ames Solution (Sigma-Aldrich, St. Louis) equilibrated with 5% CO2 / 95% O2. These and all subsequent procedures were carried out under infrared light (>900 nm) to keep the retina dark adapted.

All experiments were performed in a flat mount preparation of the retina. We cut a wedge from the eye cup and gently separated the retina from the retinal pigment epithelium. We placed the isolated retina ganglion cell-side up on a small piece of filter paper or nylon mesh and transferred it into a recording chamber. The retina was secured by nylon wires stretched across a platinum ring and perfused with warm (30-34° C) equilibrated Ames solution flowing at 6-8 mL/min.

Light Stimuli and Data Collection

Light from a light-emitting diode (LED; peak output = 470 nm) was delivered to the recording chamber via a fiber optic cable. The spatially uniform light stimulus illuminated a circular area 0.65 mm in diameter centered on the recorded cell. Calibrated photon fluxes at the preparation were converted to photoisomerization rates (Rh*/Rod/Sec) from the spectral output of the LED, absorption spectrum of rhodopsin, and an assumed collecting area per rod of 0.5 μm2. Most experiments used repeated presentations of a full-field stimulus with a temporal trajectory drawn from a Gaussian distribution (bandwith 0-60 Hz). The contrast of this stimulus was defined as the SD divided by the mean.

We used several complementary approaches to record RGC light-evoked signals. We made cell-attached (‘loose patch’) recordings with glass pipettes (4-6 MΩ) filled with Ames solution to record the pattern of light-evoked spikes without disrupting the internal composition of RGCs (Fig. 1A). To characterize light-evoked excitatory and inhibitory RGC synaptic input, we performed whole cell voltage clamp recordings (Fig. 1B) with pipettes filled with an internal solution containing 105 mM CsCH3SO3, 10 mM TEA-Cl, 20 mM HEPES, 10 mM EGTA, 5 mM Mg-ATP, 0.5 mM Tris-GTP, and 2 mM QX-314 (pH ∼7.3, ∼280 mOsm). Series resistance for voltage clamp recordings (∼15 MΩ) was compensated electronically by ≥75%. We corrected for the ∼10 mV junction potential offline.

The calculated chloride reversal potential with this internal solution is −77 mV; thus the absolute driving force for excitatory synaptic inputs recorded at the chloride reversal potential is equal to that for inhibitory synaptic currents recorded at the reversal potential for excitatory synaptic currents (∼ +10 mV). To determine whether excitatory (inhibitory) postsynaptic currents were isolated effectively at −75 (+10 mV) we computed the mean squared error between the mean response recorded at −30 mV and (1) individual recorded trials and (2) the response predicted from the sum of gexc *(−0.045) + ginh * (0.03). The driving force for inhibitory synaptic conductances was assumed to be 30 mV (rather than 40) because of the likely voltage error due to uncompensated series resistance. The mean squared error between the mean and individual measured responses at −30 mV was greater than that between the mean and predicted responses in 8/9 cells.

To measure the native chloride reversal potential, we made perforated patch recordings with a solution containing the Cl- impermeable ionophore gramicidin. For these experiments the patch pipette contained 120 mM CsCl, 10 mM TEA-Cl, 3 mM MgATP, 0.3 Tris-GTP, and 0.25-0.5 μg/mL gramicidin (pH ∼7.3, ∼280 mOsm). Glycine (100 μM) was applied to the soma via a Picospritzer (Intracel, Herts, UK). For whole cell current and conductance clamp recordings we used an internal solution containing 110 mM K Aspartate, 1 mM MgCl, 10 mM HEPES, 5 mM NMDG, 0.5 mM CaCl2, 10 mM phosphocreatine, 4 mM Mg-ATP, and 0.5 Tris-GTP (pH ∼7.2, ∼280 mOsm).

Signals were amplified with an Axoclamp 200B (Axon Instruments; Foster City, CA) amplifier, filtered at 3 kHz (8 pole Bessel low pass), and sampled at 10 kHz (ITC16 interface, Instrutech Corporation, Port Washington, NY). The current injected during conductance-clamp experiments was calculated from the measured cell voltage, the reversal potentials for excitatory (0 mV) and inhibitory (−80 mV) inputs, and the measured conductance waveforms. The feedback between measured voltage and injected current operated on each voltage sample - i.e. at 10 kHz. Conductance waveforms measured from different cells of the same type were very similar (mean peak cross-correlation >0.88 and >0.82 for excitatory and inhibitory inputs). Thus the conductance clamp experiments used conductance waveforms from one example cell of each type. Unless otherwise noted, conductance clamp experiments were performed in the presence of 5-10 μM NBQX, 10-20 μM MK-801, and 10-20 μM Strychnine to block AMPA/Kainate, NMDA, and GABA/glycine receptors, respectively.

Data Analysis

All analyses were performed using procedures written in MATLAB (The Math-Works, Natick, MA). We identified spikes recorded in both cell-attached and whole cell recording configurations with a threshold crossing algorithm; the time at which each identified event peaked was defined as the spike time. We predominantly used the spike pairing algorithim inherent in the spike distance metric (Victor and Purpura, 1996) to measure the temporal precision of light-evoked APs. The spike distance metric creates a matrix with the number of rows and columns equal to the number of spikes in spike trains SA+1 and SB+1, respectively. For a given cost of shifting spikes in time, each element in the matrix is filled according to the following equation :

SCRi,j=min{SCRi1,j+1,SCRi,j1+1,SCRi1,j1+cost(SA(i1)SB(j1))}

The value in the last row and last column of this ‘scr’ matrix represents the total spike distance.

We calculated from the scr matrix a corresponding ‘subtraction’ matrix where each element reflects the difference between the real scr matrix and a scr matrix in which all spikes were paired via the remove/replace operation [subtraction(i,j)=scr(i,j)−((i−1)+(j−1))]. The value in each element of this subtraction matrix, therefore, represents the savings in spike distance that has accumulated by pairing spikes in SA (1:i−1) and SB (1:j−1) via the shifting operation. Stepping up, left, or up and left through the subtraction matrix along the path that provides the most savings corresponds to tracing backward through the same unique path in the scr matrix that minimized the spike distance. Lateral and vertical movements through the subtraction (or scr) matrix correspond to pairing different spikes in SB with the same spike in SA and different spikes in SA with the same spike in SB, respectively.

Because a single spike in spike train SA can only be paired with a single spike in spike train SB, the unique spike pairings that minimize the total spike distance must be at least one row above and one column to the left of the last identified spike pair. Thus, starting in the element in the last row/column of the subtraction matrix [subtraction(i,j)], and for each subsequent step, one determines whether the absolute value of the element to the left or above is greater. If, for example, the value of the element above [subtraction(i,j−1)] is greater than that to the left [subtraction(i−1,j)], and the absolute value of the element above is less than the current element, one pairs spikes SA(i−1) and SB(j−1), and determines the difference in time between them (Δt). In this case SA(i−1) and SB(j−1) are paired because this pairing results in a smaller spike distance than pairing spikes SA(i−1) and SB(j−2).

If the value of the element above is greater than that to the left of the current element but is not different from the value of the current element, however, one simply steps vertically to that element without identifying SA(i−1) and SB(j−1) as a pair. This is because the algorithim that computes the spike distance metric pairs spikes from the beginning of the spike trains, corresponding to the top left corner of the scr matrix, to the end of the spike trains, corresponding the to bottom right corner of the scr matrix. Therefore, while traversing a row or column in the subtraction matrix where the value of the elements remains the same, the appropriate (unique) spike pairing between spike SA and SB corresponds to the coordinates of the element furthest to the left/top of the row/column.

If the value of the elements in the subtraction matrix above [subtraction(i,j−1)] and to the left [subtraction(i−1,j)] of the current element [subtraction(i,j)]have the same value, one moves diagonally up and to the left. As with any purely vertical or horizontal movement, one only recognizes the spike pair SA(i−1), SB(j−1) if the value of the current element [subtraction(i,j)] is different than the value of the next element [subtraction(i−1,j−1)]. If the value of these two elements in the subtraction matrix were equal the spikes SA(i−1) and SB(j−1) were paired via the remove/replace operation.

We calculated the cross correlation between average gexc and ginh in a given cell according to the following equation:

C(n)=Σi=1NxiyinN(xixi)N(yinyin)N

The Fourier transform of the linear filter between each response evoked by a 50% contrast stimulus and each response evoked by a 25% or 10% stimulus is given by:

F=<yx><xx>

where y is the Fourier transform of a response evoked by 25 or 10% stimuli, × is the Fourier transform of a response evoked by 50% contrast stimuli, and ×′ is the conjugate of ×. We then averaged across all filters for a given cell and condition. The peak of the cross correlation between individual measured trials and the mean was smaller than that between the mean response and each predicted response in every experiment examined, indicating that the predicted responses were indistinguishable from measured responses obtained on individual trials. We used the filters constructed from one On cell to transform the 50% conductance waveforms (recorded from another cell) so that the average 50% excitatory and inhibitory synaptic conductance waveforms were identical across experiments.

Statistical significance was tested with the Student's t test, unless noted otherwise. Data are presented as mean ± SEM throughout the text and figures.

Supplementary Material

01

Acknowledgments

We thank Abby Person, David Perkel, Kevin Briggman, Barry Wark, Greg Field, Thuy Doan, and Felice Dunn for detailed comments on the manuscript, and Eric Martinson and Paul Newman for excellent technical assistance. Support provided by HHMI and NIH (EY-11850).

Footnotes

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