Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1993 Apr;175(8):2197–2204. doi: 10.1128/jb.175.8.2197-2204.1993

Genetic construction and functional analysis of hybrid polyketide synthases containing heterologous acyl carrier proteins.

C Khosla 1, R McDaniel 1, S Ebert-Khosla 1, R Torres 1, D H Sherman 1, M J Bibb 1, D A Hopwood 1
PMCID: PMC204504  PMID: 8468280

Abstract

The gene that encodes the acyl carrier protein (ACP) of the actinorhodin polyketide synthase (PKS) of Streptomyces coelicolor A3(2) was replaced with homologs from the granaticin, oxytetracycline, tetracenomycin, and putative frenolicin polyketide synthase gene clusters. All of the replacements led to expression of functional synthases, and the recombinants synthesized aromatic polyketides similar in chromatographic properties to actinorhodin or to shunt products produced by mutants defective in the actinorhodin pathway. Some regions within the ACP were also shown to be interchangeable and allow production of a functional hybrid ACP. Structural analysis of the most abundant polyketide product of one of the recombinants by electrospray mass spectrometry suggested that it is identical to mutactin, a previously characterized shunt product of an actVII mutant (deficient in cyclase and dehydrase activities). Quantitative differences in the product profiles of strains that express the various hybrid synthases were observed. These can be explained, at least in part, by differences in ribosome-binding sites upstream of each ACP gene, implying either that the ACP concentration in some strains is rate limiting to overall PKS activity or that the level of ACP expression also influences the expression of another enzyme(s) encoded by a downstream gene(s) in the same operon as the actinorhodin ACP gene. These results reaffirm the idea that construction of hybrid polyketide synthases will be a useful approach for dissecting the molecular basis of the specificity of PKS-catalyzed reactions. However, they also point to the need for reducing the chemical complexity of the approach by minimizing the diversity of polyketide products synthesized in strains that produce recombinant polyketide synthases.

Full text

PDF

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bartel P. L., Zhu C. B., Lampel J. S., Dosch D. C., Connors N. C., Strohl W. R., Beale J. M., Jr, Floss H. G. Biosynthesis of anthraquinones by interspecies cloning of actinorhodin biosynthesis genes in streptomycetes: clarification of actinorhodin gene functions. J Bacteriol. 1990 Sep;172(9):4816–4826. doi: 10.1128/jb.172.9.4816-4826.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bibb M. J., Biró S., Motamedi H., Collins J. F., Hutchinson C. R. Analysis of the nucleotide sequence of the Streptomyces glaucescens tcmI genes provides key information about the enzymology of polyketide antibiotic biosynthesis. EMBO J. 1989 Sep;8(9):2727–2736. doi: 10.1002/j.1460-2075.1989.tb08414.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bibb M. J., Cohen S. N. Gene expression in Streptomyces: construction and application of promoter-probe plasmid vectors in Streptomyces lividans. Mol Gen Genet. 1982;187(2):265–277. doi: 10.1007/BF00331128. [DOI] [PubMed] [Google Scholar]
  4. Bolivar F., Rodriguez R. L., Greene P. J., Betlach M. C., Heyneker H. L., Boyer H. W., Crosa J. H., Falkow S. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene. 1977;2(2):95–113. [PubMed] [Google Scholar]
  5. Donadio S., Staver M. J., McAlpine J. B., Swanson S. J., Katz L. Modular organization of genes required for complex polyketide biosynthesis. Science. 1991 May 3;252(5006):675–679. doi: 10.1126/science.2024119. [DOI] [PubMed] [Google Scholar]
  6. Fernández-Moreno M. A., Martínez E., Boto L., Hopwood D. A., Malpartida F. Nucleotide sequence and deduced functions of a set of cotranscribed genes of Streptomyces coelicolor A3(2) including the polyketide synthase for the antibiotic actinorhodin. J Biol Chem. 1992 Sep 25;267(27):19278–19290. [PubMed] [Google Scholar]
  7. Gramajo H. C., White J., Hutchinson C. R., Bibb M. J. Overproduction and localization of components of the polyketide synthase of Streptomyces glaucescens involved in the production of the antibiotic tetracenomycin C. J Bacteriol. 1991 Oct;173(20):6475–6483. doi: 10.1128/jb.173.20.6475-6483.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Hallam S. E., Malpartida F., Hopwood D. A. Nucleotide sequence, transcription and deduced function of a gene involved in polyketide antibiotic synthesis in Streptomyces coelicolor. Gene. 1988 Dec 30;74(2):305–320. doi: 10.1016/0378-1119(88)90165-5. [DOI] [PubMed] [Google Scholar]
  9. Hopwood D. A., Khosla C. Genes for polyketide secondary metabolic pathways in microorganisms and plants. Ciba Found Symp. 1992;171:88–112. doi: 10.1002/9780470514344.ch6. [DOI] [PubMed] [Google Scholar]
  10. Hopwood D. A., Sherman D. H. Molecular genetics of polyketides and its comparison to fatty acid biosynthesis. Annu Rev Genet. 1990;24:37–66. doi: 10.1146/annurev.ge.24.120190.000345. [DOI] [PubMed] [Google Scholar]
  11. Khosla C., Ebert-Khosla S., Hopwood D. A. Targeted gene replacements in a Streptomyces polyketide synthase gene cluster: role for the acyl carrier protein. Mol Microbiol. 1992 Nov;6(21):3237–3249. doi: 10.1111/j.1365-2958.1992.tb01778.x. [DOI] [PubMed] [Google Scholar]
  12. Lanz T., Tropf S., Marner F. J., Schröder J., Schröder G. The role of cysteines in polyketide synthases. Site-directed mutagenesis of resveratrol and chalcone synthases, two key enzymes in different plant-specific pathways. J Biol Chem. 1991 May 25;266(15):9971–9976. [PubMed] [Google Scholar]
  13. MacNeil D. J. Characterization of a unique methyl-specific restriction system in Streptomyces avermitilis. J Bacteriol. 1988 Dec;170(12):5607–5612. doi: 10.1128/jb.170.12.5607-5612.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Robinson J. A. Polyketide synthase complexes: their structure and function in antibiotic biosynthesis. Philos Trans R Soc Lond B Biol Sci. 1991 May 29;332(1263):107–114. doi: 10.1098/rstb.1991.0038. [DOI] [PubMed] [Google Scholar]
  15. Rudd B. A., Hopwood D. A. Genetics of actinorhodin biosynthesis by Streptomyces coelicolor A3(2). J Gen Microbiol. 1979 Sep;114(1):35–43. doi: 10.1099/00221287-114-1-35. [DOI] [PubMed] [Google Scholar]
  16. Sherman D. H., Kim E. S., Bibb M. J., Hopwood D. A. Functional replacement of genes for individual polyketide synthase components in Streptomyces coelicolor A3(2) by heterologous genes from a different polyketide pathway. J Bacteriol. 1992 Oct;174(19):6184–6190. doi: 10.1128/jb.174.19.6184-6190.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sherman D. H., Malpartida F., Bibb M. J., Kieser H. M., Bibb M. J., Hopwood D. A. Structure and deduced function of the granaticin-producing polyketide synthase gene cluster of Streptomyces violaceoruber Tü22. EMBO J. 1989 Sep;8(9):2717–2725. doi: 10.1002/j.1460-2075.1989.tb08413.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Summers R. G., Wendt-Pienkowski E., Motamedi H., Hutchinson C. R. Nucleotide sequence of the tcmII-tcmIV region of the tetracenomycin C biosynthetic gene cluster of Streptomyces glaucescens and evidence that the tcmN gene encodes a multifunctional cyclase-dehydratase-O-methyl transferase. J Bacteriol. 1992 Mar;174(6):1810–1820. doi: 10.1128/jb.174.6.1810-1820.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Vieira J., Messing J. Production of single-stranded plasmid DNA. Methods Enzymol. 1987;153:3–11. doi: 10.1016/0076-6879(87)53044-0. [DOI] [PubMed] [Google Scholar]
  20. Wakil S. J. Fatty acid synthase, a proficient multifunctional enzyme. Biochemistry. 1989 May 30;28(11):4523–4530. doi: 10.1021/bi00437a001. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES