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. 1993 Apr;175(8):2292–2303. doi: 10.1128/jb.175.8.2292-2303.1993

Expression of the Rhodobacter sphaeroides hemA and hemT genes, encoding two 5-aminolevulinic acid synthase isozymes.

E L Neidle 1, S Kaplan 1
PMCID: PMC204517  PMID: 8468290

Abstract

The nucleotide sequences of the Rhodobacter sphaeroides hemA and hemT genes, encoding 5-aminolevulinic acid (ALA) synthase isozymes, were determined. ALA synthase catalyzes the condensation of glycine and succinyl coenzyme A, the first and rate-limiting step in tetrapyrrole biosynthesis. The hemA and hemT structural gene sequences were 65% identical to each other, and the deduced HemA and HemT polypeptide sequences were 53% identical, with an additional 16% of aligned amino acids being similar. HemA and HemT were homologous to all characterized ALA synthases, including two human ALA synthase isozymes. In addition, they were evolutionarily related to 7-keto-8-aminopelargonic acid synthetase (BioF) and 2-amino-3-ketobutyrate coenzyme A ligase (Kbl), enzymes which catalyze similar reactions. Two hemA transcripts were identified, both expressed under photosynthetic conditions at levels approximately three times higher than those found under aerobic conditions. A single transcriptional start point was identified for both transcripts, and a consensus sequence at this location indicated that an Fnr-like protein may be involved in the transcriptional regulation of hemA. Transcription of hemT was not detected in wild-type cells under the physiological growth conditions tested. In a mutant strain in which the hemA gene had been inactivated, however, hemT was expressed. In this mutant, hemT transcripts were characterized by Northern (RNA) hybridization, primer extension, and ribonuclease protection techniques. A small open reading frame of unknown function was identified upstream of, and transcribed in the same direction as, hemA.

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  1. Aronson B. D., Ravnikar P. D., Somerville R. L. Nucleotide sequence of the 2-amino-3-ketobutyrate coenzyme A ligase (kbl) gene of E. coli. Nucleic Acids Res. 1988 Apr 25;16(8):3586–3586. doi: 10.1093/nar/16.8.3586. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Avissar Y. J., Ormerod J. G., Beale S. I. Distribution of delta-aminolevulinic acid biosynthetic pathways among phototrophic bacterial groups. Arch Microbiol. 1989;151(6):513–519. doi: 10.1007/BF00454867. [DOI] [PubMed] [Google Scholar]
  3. Bishop D. F. Two different genes encode delta-aminolevulinate synthase in humans: nucleotide sequences of cDNAs for the housekeeping and erythroid genes. Nucleic Acids Res. 1990 Dec 11;18(23):7187–7188. doi: 10.1093/nar/18.23.7187. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. COHEN-BAZIRE G., SISTROM W. R., STANIER R. Y. Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Physiol. 1957 Feb;49(1):25–68. doi: 10.1002/jcp.1030490104. [DOI] [PubMed] [Google Scholar]
  5. Clement-Metral J. D. Activation of ALA synthetase by reduced thioredoxin in Rhodopseudomonas spheroides Y. FEBS Lett. 1979 May 1;101(1):116–120. doi: 10.1016/0014-5793(79)81307-1. [DOI] [PubMed] [Google Scholar]
  6. Colonna-Romano S., Arnold W., Schlüter A., Boistard P., Pühler A., Priefer U. B. An Fnr-like protein encoded in Rhizobium leguminosarum biovar viciae shows structural and functional homology to Rhizobium meliloti FixK. Mol Gen Genet. 1990 Aug;223(1):138–147. doi: 10.1007/BF00315806. [DOI] [PubMed] [Google Scholar]
  7. Cotter P. D., Baumann M., Bishop D. F. Enzymatic defect in "X-linked" sideroblastic anemia: molecular evidence for erythroid delta-aminolevulinate synthase deficiency. Proc Natl Acad Sci U S A. 1992 May 1;89(9):4028–4032. doi: 10.1073/pnas.89.9.4028. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Drolet M., Sasarman A. Cloning and nucleotide sequence of the hemA gene of Agrobacterium radiobacter. Mol Gen Genet. 1991 Apr;226(1-2):250–256. doi: 10.1007/BF00273610. [DOI] [PubMed] [Google Scholar]
  10. Fanica-Gaignier M., Clément-Métral J. Cellular compartmentation of two species of delta-aminolevulinic acid synthetase in a facultative photohetero-trophic bacterium (Rps. spheroides Y.). Biochem Biophys Res Commun. 1973 Dec 10;55(3):610–615. doi: 10.1016/0006-291x(73)91187-x. [DOI] [PubMed] [Google Scholar]
  11. Gilles-Gonzalez M. A., Ditta G. S., Helinski D. R. A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti. Nature. 1991 Mar 14;350(6314):170–172. doi: 10.1038/350170a0. [DOI] [PubMed] [Google Scholar]
  12. Gloeckler R., Ohsawa I., Speck D., Ledoux C., Bernard S., Zinsius M., Villeval D., Kisou T., Kamogawa K., Lemoine Y. Cloning and characterization of the Bacillus sphaericus genes controlling the bioconversion of pimelate into dethiobiotin. Gene. 1990 Mar 1;87(1):63–70. doi: 10.1016/0378-1119(90)90496-e. [DOI] [PubMed] [Google Scholar]
  13. Hornberger U., Liebetanz R., Tichy H. V., Drews G. Cloning and sequencing of the hemA gene of Rhodobacter capsulatus and isolation of a delta-aminolevulinic acid-dependent mutant strain. Mol Gen Genet. 1990 May;221(3):371–378. doi: 10.1007/BF00259402. [DOI] [PubMed] [Google Scholar]
  14. Lee J. K., Kaplan S. cis-acting regulatory elements involved in oxygen and light control of puc operon transcription in Rhodobacter sphaeroides. J Bacteriol. 1992 Feb;174(4):1146–1157. doi: 10.1128/jb.174.4.1146-1157.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lee J. K., Kiley P. J., Kaplan S. Posttranscriptional control of puc operon expression of B800-850 light-harvesting complex formation in Rhodobacter sphaeroides. J Bacteriol. 1989 Jun;171(6):3391–3405. doi: 10.1128/jb.171.6.3391-3405.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Leong S. A., Ditta G. S., Helinski D. R. Heme biosynthesis in Rhizobium. Identification of a cloned gene coding for delta-aminolevulinic acid synthetase from Rhizobium meliloti. J Biol Chem. 1982 Aug 10;257(15):8724–8730. [PubMed] [Google Scholar]
  17. Leong S. A., Williams P. H., Ditta G. S. Analysis of the 5' regulatory region of the gene for delta-aminolevulinic acid synthetase of Rhizobium meliloti. Nucleic Acids Res. 1985 Aug 26;13(16):5965–5976. doi: 10.1093/nar/13.16.5965. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Lipman D. J., Pearson W. R. Rapid and sensitive protein similarity searches. Science. 1985 Mar 22;227(4693):1435–1441. doi: 10.1126/science.2983426. [DOI] [PubMed] [Google Scholar]
  19. Lueking D. R., Fraley R. T., Kaplan S. Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. Fate of "old" and "new" membrane. J Biol Chem. 1978 Jan 25;253(2):451–457. [PubMed] [Google Scholar]
  20. Maguire D. J., Day A. R., Borthwick I. A., Srivastava G., Wigley P. L., May B. K., Elliott W. H. Nucleotide sequence of the chicken 5-aminolevulinate synthase gene. Nucleic Acids Res. 1986 Feb 11;14(3):1379–1391. doi: 10.1093/nar/14.3.1379. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Marceau M., Lewis S. D., Kojiro C. L., Mountjoy K., Shafer J. A. Disruption of active site interactions with pyridoxal 5'-phosphate and substrates by conservative replacements in the glycine-rich loop of Escherichia coli D-serine dehydratase. J Biol Chem. 1990 Nov 25;265(33):20421–20429. [PubMed] [Google Scholar]
  22. McClung C. R., Somerville J. E., Guerinot M. L., Chelm B. K. Structure of the Bradyrhizobium japonicum gene hemA encoding 5-aminolevulinic acid synthase. Gene. 1987;54(1):133–139. doi: 10.1016/0378-1119(87)90355-6. [DOI] [PubMed] [Google Scholar]
  23. McKnight S. L., Kingsbury R. Transcriptional control signals of a eukaryotic protein-coding gene. Science. 1982 Jul 23;217(4557):316–324. doi: 10.1126/science.6283634. [DOI] [PubMed] [Google Scholar]
  24. Michalski W. P., Nicholas D. J. Inhibition of bacteriochlorophyll synthesis in Rhodobacter sphaeroides subsp. denitrificans grown in light under denitrifying conditions. J Bacteriol. 1987 Oct;169(10):4651–4659. doi: 10.1128/jb.169.10.4651-4659.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Nandi D. L., Shemin D. Quaternary structure of delta-aminolevulinic acid synthase from Rhodopseudomonas spheroides. J Biol Chem. 1977 Apr 10;252(7):2278–2280. [PubMed] [Google Scholar]
  26. Neidle E. L., Kaplan S. 5-Aminolevulinic acid availability and control of spectral complex formation in hemA and hemT mutants of Rhodobacter sphaeroides. J Bacteriol. 1993 Apr;175(8):2304–2313. doi: 10.1128/jb.175.8.2304-2313.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Neidle E. L., Kaplan S. Rhodobacter sphaeroides rdxA, a homolog of Rhizobium meliloti fixG, encodes a membrane protein which may bind cytoplasmic [4Fe-4S] clusters. J Bacteriol. 1992 Oct;174(20):6444–6454. doi: 10.1128/jb.174.20.6444-6454.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Neuberger A., Sandy J. D., Tait G. H. Control of 5-aminolaevulinate synthetase activity in Rhodopseudomonas spheroides. The involvement of sulphur metabolism. Biochem J. 1973 Nov;136(3):477–490. doi: 10.1042/bj1360477. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Otsuka A. J., Buoncristiani M. R., Howard P. K., Flamm J., Johnson C., Yamamoto R., Uchida K., Cook C., Ruppert J., Matsuzaki J. The Escherichia coli biotin biosynthetic enzyme sequences predicted from the nucleotide sequence of the bio operon. J Biol Chem. 1988 Dec 25;263(36):19577–19585. [PubMed] [Google Scholar]
  30. Prentki P., Krisch H. M. In vitro insertional mutagenesis with a selectable DNA fragment. Gene. 1984 Sep;29(3):303–313. doi: 10.1016/0378-1119(84)90059-3. [DOI] [PubMed] [Google Scholar]
  31. Sandy J. D., Davies R. C., Neuberger A. Control of 5-aminolaevulinate synthetase activity in Rhodopseudomonas spheroides a role for trisulphides. Biochem J. 1975 Aug;150(2):245–257. doi: 10.1042/bj1500245. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Sarmientos P., Sylvester J. E., Contente S., Cashel M. Differential stringent control of the tandem E. coli ribosomal RNA promoters from the rrnA operon expressed in vivo in multicopy plasmids. Cell. 1983 Apr;32(4):1337–1346. doi: 10.1016/0092-8674(83)90314-8. [DOI] [PubMed] [Google Scholar]
  34. Schoenhaut D. S., Curtis P. J. Nucleotide sequence of mouse 5-aminolevulinic acid synthase cDNA and expression of its gene in hepatic and erythroid tissues. Gene. 1986;48(1):55–63. doi: 10.1016/0378-1119(86)90351-3. [DOI] [PubMed] [Google Scholar]
  35. Shine J., Dalgarno L. Determinant of cistron specificity in bacterial ribosomes. Nature. 1975 Mar 6;254(5495):34–38. doi: 10.1038/254034a0. [DOI] [PubMed] [Google Scholar]
  36. Spiro S., Guest J. R. FNR and its role in oxygen-regulated gene expression in Escherichia coli. FEMS Microbiol Rev. 1990 Aug;6(4):399–428. doi: 10.1111/j.1574-6968.1990.tb04109.x. [DOI] [PubMed] [Google Scholar]
  37. Tai T. N., Moore M. D., Kaplan S. Cloning and characterization of the 5-aminolevulinate synthase gene(s) from Rhodobacter sphaeroides. Gene. 1988 Oct 15;70(1):139–151. doi: 10.1016/0378-1119(88)90112-6. [DOI] [PubMed] [Google Scholar]
  38. Tuboi S., Hayasaka S. Control of -aminolevulinate synthetase activity in Rhodopseudomonas spheroides. II. Requirement of a disulfide compound for the conversion of the inactive form of fraction I to the active form. Arch Biochem Biophys. 1972 Jun;150(2):690–697. doi: 10.1016/0003-9861(72)90087-2. [DOI] [PubMed] [Google Scholar]
  39. Urban-Grimal D., Volland C., Garnier T., Dehoux P., Labbe-Bois R. The nucleotide sequence of the HEM1 gene and evidence for a precursor form of the mitochondrial 5-aminolevulinate synthase in Saccharomyces cerevisiae. Eur J Biochem. 1986 May 2;156(3):511–519. doi: 10.1111/j.1432-1033.1986.tb09610.x. [DOI] [PubMed] [Google Scholar]
  40. Vieira J., Messing J. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene. 1982 Oct;19(3):259–268. doi: 10.1016/0378-1119(82)90015-4. [DOI] [PubMed] [Google Scholar]
  41. Warnick G. R., Burnham B. F. Regulation of prophyrin biosynthesis. Purification and characterization of -aminolevulinic acid synthase. J Biol Chem. 1971 Nov 25;246(22):6880–6885. [PubMed] [Google Scholar]
  42. Weinstein J. D., Beale S. I. Separate physiological roles and subcellular compartments for two tetrapyrrole biosynthetic pathways in Euglena gracilis. J Biol Chem. 1983 Jun 10;258(11):6799–6807. [PubMed] [Google Scholar]
  43. Wierenga R. K., Terpstra P., Hol W. G. Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint. J Mol Biol. 1986 Jan 5;187(1):101–107. doi: 10.1016/0022-2836(86)90409-2. [DOI] [PubMed] [Google Scholar]
  44. Wright M. S., Eckert J. J., Biel S. W., Biel A. J. Use of a lacZ fusion to study transcriptional regulation of the Rhodobacter capsulatus hemA gene. FEMS Microbiol Lett. 1991 Mar 1;62(2-3):339–342. doi: 10.1016/0378-1097(91)90181-9. [DOI] [PubMed] [Google Scholar]
  45. Yamamoto M., Kure S., Engel J. D., Hiraga K. Structure, turnover, and heme-mediated suppression of the level of mRNA encoding rat liver delta-aminolevulinate synthase. J Biol Chem. 1988 Nov 5;263(31):15973–15979. [PubMed] [Google Scholar]
  46. Yang D., Oyaizu Y., Oyaizu H., Olsen G. J., Woese C. R. Mitochondrial origins. Proc Natl Acad Sci U S A. 1985 Jul;82(13):4443–4447. doi: 10.1073/pnas.82.13.4443. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
  48. Yubisui T., Yoneyama Y. -Aminolevulinic acid synthetase of Rhodopseudomonas spheroides: purification and properties of the enzyme. Arch Biochem Biophys. 1972 May;150(1):77–85. doi: 10.1016/0003-9861(72)90012-4. [DOI] [PubMed] [Google Scholar]
  49. Zhu Y. S., Kaplan S. Effects of light, oxygen, and substrates on steady-state levels of mRNA coding for ribulose-1,5-bisphosphate carboxylase and light-harvesting and reaction center polypeptides in Rhodopseudomonas sphaeroides. J Bacteriol. 1985 Jun;162(3):925–932. doi: 10.1128/jb.162.3.925-932.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. van Niel C. B. THE CULTURE, GENERAL PHYSIOLOGY, MORPHOLOGY, AND CLASSIFICATION OF THE NON-SULFUR PURPLE AND BROWN BACTERIA. Bacteriol Rev. 1944 Mar;8(1):1–118. doi: 10.1128/br.8.1.1-118.1944. [DOI] [PMC free article] [PubMed] [Google Scholar]

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