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. 1993 Aug;175(16):5049–5056. doi: 10.1128/jb.175.16.5049-5056.1993

OmpF assembly mutants of Escherichia coli K-12: isolation, characterization, and suppressor analysis.

R Misra 1
PMCID: PMC204971  PMID: 8349546

Abstract

This paper describes a novel genetic method used to isolate mutations that alter proper assembly of OmpF in the outer membrane. The thermolabile nature of assembly intermediates allowed selection of temperature-sensitive mutations within the ompF gene. A variant allele of ompF (ompF-Dex) was used because it provided a convenient selectable phenotype (Dex+). Assembly mutants were isolated in two steps. First, amber mutations were obtained that mapped in ompF-Dex. This resulted in a Dex- phenotype. Starting with these Dex- strains, Dex+ revertants were isolated. Mutants that displayed a temperature-sensitive Dex+ phenotype were further characterized. Three such mutants possessed a single substitution within ompF that reverted the nonsense codon to a sense codon which replaced W214 with either an E or Q and Y231 with a Q residue in the mature OmpF protein. All three mutant OmpF proteins showed an assembly defect. This defect led to a substantial reduction in the amount of stable OmpF trimers with the concomitant increase of a high-molecular-weight form of OmpF which migrated at the top of the gel. Suppressor mutations were sought that corrected the assembly defect of OmpF. These extragenic suppressor mutations were mapped at 45 min on the Escherichia coli chromosome. The suppressor mutations displayed no allele specificity and were recessive to the wild-type allele. In the presence of a suppressor, mutant stable trimers appeared in an almost normal manner. The appearance of stable trimers concurred with a substantial loss of the high-molecular-weight OmpF species. At this stage, it is not clear whether the high-molecular-weight species of OmpF is a normal assembly intermediate or a dead-end assembly product. The results presented in this study raise the intriguing possibility of a chaperone-like activity for the wild-type suppressor gene product.

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Selected References

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  1. Ames G. F., Spudich E. N., Nikaido H. Protein composition of the outer membrane of Salmonella typhimurium: effect of lipopolysaccharide mutations. J Bacteriol. 1974 Feb;117(2):406–416. doi: 10.1128/jb.117.2.406-416.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Baker K., Mackman N., Holland I. B. Genetics and biochemistry of the assembly of proteins into the outer membrane of E. coli. Prog Biophys Mol Biol. 1987;49(2-3):89–115. doi: 10.1016/0079-6107(87)90010-1. [DOI] [PubMed] [Google Scholar]
  3. Benson S. A., Occi J. L., Sampson B. A. Mutations that alter the pore function of the OmpF porin of Escherichia coli K12. J Mol Biol. 1988 Oct 20;203(4):961–970. doi: 10.1016/0022-2836(88)90121-0. [DOI] [PubMed] [Google Scholar]
  4. Casadaban M. J. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol. 1976 Jul 5;104(3):541–555. doi: 10.1016/0022-2836(76)90119-4. [DOI] [PubMed] [Google Scholar]
  5. Cowan S. W., Schirmer T., Rummel G., Steiert M., Ghosh R., Pauptit R. A., Jansonius J. N., Rosenbusch J. P. Crystal structures explain functional properties of two E. coli porins. Nature. 1992 Aug 27;358(6389):727–733. doi: 10.1038/358727a0. [DOI] [PubMed] [Google Scholar]
  6. Emr S. D., Silhavy T. J. Mutations affecting localization of an Escherichia coli outer membrane protein, the bacteriophage lambda receptor. J Mol Biol. 1980 Jul 25;141(1):63–90. doi: 10.1016/s0022-2836(80)80029-5. [DOI] [PubMed] [Google Scholar]
  7. Fourel D., Mizushima S., Pagès J. M. Dynamics of the exposure of epitopes on OmpF, an outer membrane protein of Escherichia coli. Eur J Biochem. 1992 May 15;206(1):109–114. doi: 10.1111/j.1432-1033.1992.tb16907.x. [DOI] [PubMed] [Google Scholar]
  8. Hall M. N., Silhavy T. J. The ompB locus and the regulation of the major outer membrane porin proteins of Escherichia coli K12. J Mol Biol. 1981 Feb 15;146(1):23–43. doi: 10.1016/0022-2836(81)90364-8. [DOI] [PubMed] [Google Scholar]
  9. Lugtenberg B., Meijers J., Peters R., van der Hoek P., van Alphen L. Electrophoretic resolution of the "major outer membrane protein" of Escherichia coli K12 into four bands. FEBS Lett. 1975 Oct 15;58(1):254–258. doi: 10.1016/0014-5793(75)80272-9. [DOI] [PubMed] [Google Scholar]
  10. Misra R., Benson S. A. A novel mutation, cog, which results in production of a new porin protein (OmpG) of Escherichia coli K-12. J Bacteriol. 1989 Aug;171(8):4105–4111. doi: 10.1128/jb.171.8.4105-4111.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Misra R., Benson S. A. Genetic identification of the pore domain of the OmpC porin of Escherichia coli K-12. J Bacteriol. 1988 Aug;170(8):3611–3617. doi: 10.1128/jb.170.8.3611-3617.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Misra R., Benson S. A. Isolation and characterization of OmpC porin mutants with altered pore properties. J Bacteriol. 1988 Feb;170(2):528–533. doi: 10.1128/jb.170.2.528-533.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Misra R., Peterson A., Ferenci T., Silhavy T. J. A genetic approach for analyzing the pathway of LamB assembly into the outer membrane of Escherichia coli. J Biol Chem. 1991 Jul 25;266(21):13592–13597. [PubMed] [Google Scholar]
  14. Nikaido H., Wu H. C. Amino acid sequence homology among the major outer membrane proteins of Escherichia coli. Proc Natl Acad Sci U S A. 1984 Feb;81(4):1048–1052. doi: 10.1073/pnas.81.4.1048. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Reid J., Fung H., Gehring K., Klebba P. E., Nikaido H. Targeting of porin to the outer membrane of Escherichia coli. Rate of trimer assembly and identification of a dimer intermediate. J Biol Chem. 1988 Jun 5;263(16):7753–7759. [PubMed] [Google Scholar]
  16. Sampson B. A., Misra R., Benson S. A. Identification and characterization of a new gene of Escherichia coli K-12 involved in outer membrane permeability. Genetics. 1989 Jul;122(3):491–501. doi: 10.1093/genetics/122.3.491. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sen K., Nikaido H. In vitro trimerization of OmpF porin secreted by spheroplasts of Escherichia coli. Proc Natl Acad Sci U S A. 1990 Jan;87(2):743–747. doi: 10.1073/pnas.87.2.743. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Sen K., Nikaido H. Lipopolysaccharide structure required for in vitro trimerization of Escherichia coli OmpF porin. J Bacteriol. 1991 Jan;173(2):926–928. doi: 10.1128/jb.173.2.926-928.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Sen K., Nikaido H. Trimerization of an in vitro synthesized OmpF porin of Escherichia coli outer membrane. J Biol Chem. 1991 Jun 15;266(17):11295–11300. [PubMed] [Google Scholar]
  20. Vos-Scheperkeuter G. H., Witholt B. Assembly pathway of newly synthesized LamB protein an outer membrane protein of Escherichia coli K-12. J Mol Biol. 1984 Jun 5;175(4):511–528. doi: 10.1016/0022-2836(84)90182-7. [DOI] [PubMed] [Google Scholar]
  21. Watanabe M., Hunt J. F., Blobel G. In vitro synthesized bacterial outer membrane protein is integrated into bacterial inner membranes but translocated across microsomal membranes. Nature. 1986 Sep 4;323(6083):71–73. doi: 10.1038/323071a0. [DOI] [PubMed] [Google Scholar]

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