Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1994 Mar;176(6):1667–1672. doi: 10.1128/jb.176.6.1667-1672.1994

DNA helicase requirements for DNA replication during bacteriophage T4 infection.

P Gauss 1, K Park 1, T E Spencer 1, K J Hacker 1
PMCID: PMC205253  PMID: 8132462

Abstract

The lytic bacteriophage T4 uses multiple mechanisms to initiate the replication of its DNA. Initiation occurs predominantly at replication origins at early times of infection, but there is a switch to genetic recombination-dependent initiation at late times of infection. The T4 insertion-substitution system was used to create a deletion in the T4 dda gene, which encodes a 5'-3' DNA helicase that stimulates both DNA replication and recombination reactions in vitro. The deletion caused a delay in T4 DNA synthesis at early times of infection, suggesting that the Dda protein is involved in the initiation of origin-dependent DNA synthesis. However, DNA synthesis eventually reached nearly wild-type levels, and the final number of phages produced per bacterium was similar to that of the wild type. When the dda mutant phage also contained a mutation in T4 gene 59 (a gene normally required only for recombination-dependent DNA replication), essentially no DNA was synthesized. Recent in vitro studies have shown that the gene 59 protein loads a component of the primosome, the T4 gene 41 DNA helicase, onto DNA. A molecular model for replication initiation is presented that is based on our genetic data.

Full text

PDF
1667

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bedinger P., Hochstrasser M., Jongeneel C. V., Alberts B. M. Properties of the T4 bacteriophage DNA replication apparatus: the T4 dda DNA helicase is required to pass a bound RNA polymerase molecule. Cell. 1983 Aug;34(1):115–123. doi: 10.1016/0092-8674(83)90141-1. [DOI] [PubMed] [Google Scholar]
  2. Behme M. T., Ebisuzaki K. Characterization of a bacteriophage T4 mutant lacking DNA-dependent ATPase. J Virol. 1975 Jan;15(1):50–54. doi: 10.1128/jvi.15.1.50-54.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Benson K. H., Kreuzer K. N. Plasmid models for bacteriophage T4 DNA replication: requirements for fork proteins. J Virol. 1992 Dec;66(12):6960–6968. doi: 10.1128/jvi.66.12.6960-6968.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Broker T. R., Lehman I. R. Branched DNA molecules: intermediates in T4 recombination. J Mol Biol. 1971 Aug 28;60(1):131–149. doi: 10.1016/0022-2836(71)90453-0. [DOI] [PubMed] [Google Scholar]
  5. Cunningham R. P., Berger H. Mutations affecting genetic recombination in bacteriophage T4D. I. Pathway analysis. Virology. 1977 Jul 1;80(1):67–82. doi: 10.1016/0042-6822(77)90381-6. [DOI] [PubMed] [Google Scholar]
  6. Dannenberg R., Mosig G. Early intermediates in bacteriophage T4 DNA replication and recombination. J Virol. 1983 Feb;45(2):813–831. doi: 10.1128/jvi.45.2.813-831.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Debreceni N., Behme M. T., Ebisuzaki K. A DNA-dependent ATPase from E. coli infected with bacteriophaget4. Biochem Biophys Res Commun. 1970 Oct 9;41(1):115–121. doi: 10.1016/0006-291x(70)90476-6. [DOI] [PubMed] [Google Scholar]
  8. Denhardt D. T. A membrane-filter technique for the detection of complementary DNA. Biochem Biophys Res Commun. 1966 Jun 13;23(5):641–646. doi: 10.1016/0006-291x(66)90447-5. [DOI] [PubMed] [Google Scholar]
  9. Derr L. K., Kreuzer K. N. Expression and function of the uvsW gene of bacteriophage T4. J Mol Biol. 1990 Aug 5;214(3):643–656. doi: 10.1016/0022-2836(90)90283-R. [DOI] [PubMed] [Google Scholar]
  10. Doherty D. H., Gauss P., Gold L. On the role of the single-stranded DNA binding protein of bacteriophage T4 in DNA metabolism. I. Isolation and genetic characterization of new mutations in gene 32 of bacteriophage T4. Mol Gen Genet. 1982;188(1):77–90. doi: 10.1007/BF00332998. [DOI] [PubMed] [Google Scholar]
  11. Formosa T., Alberts B. M. The use of affinity chromatography to study proteins involved in bacteriophage T4 genetic recombination. Cold Spring Harb Symp Quant Biol. 1984;49:363–370. doi: 10.1101/sqb.1984.049.01.043. [DOI] [PubMed] [Google Scholar]
  12. Gauss P., Doherty D. H., Gold L. Bacterial and phage mutations that reveal helix-unwinding activities required for bacteriophage T4 DNA replication. Proc Natl Acad Sci U S A. 1983 Mar;80(6):1669–1673. doi: 10.1073/pnas.80.6.1669. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Gauss P., Gayle M., Winter R. B., Gold L. The bacteriophage T4 dexA gene: sequence and analysis of a gene conditionally required for DNA replication. Mol Gen Genet. 1987 Jan;206(1):24–34. doi: 10.1007/BF00326532. [DOI] [PubMed] [Google Scholar]
  14. Hacker K. J., Alberts B. M. Overexpression, purification, sequence analysis, and characterization of the T4 bacteriophage dda DNA helicase. J Biol Chem. 1992 Oct 15;267(29):20674–20681. [PubMed] [Google Scholar]
  15. Jongeneel C. V., Bedinger P., Alberts B. M. Effects of the bacteriophage T4 dda protein on DNA synthesis catalyzed by purified T4 replication proteins. J Biol Chem. 1984 Oct 25;259(20):12933–12938. [PubMed] [Google Scholar]
  16. Jongeneel C. V., Formosa T., Alberts B. M. Purification and characterization of the bacteriophage T4 dda protein. A DNA helicase that associates with the viral helix-destabilizing protein. J Biol Chem. 1984 Oct 25;259(20):12925–12932. [PubMed] [Google Scholar]
  17. Kodadek T., Alberts B. M. Stimulation of protein-directed strand exchange by a DNA helicase. Nature. 1987 Mar 19;326(6110):312–314. doi: 10.1038/326312a0. [DOI] [PubMed] [Google Scholar]
  18. Kozinski A. W., Doermann A. H., Kozinski P. B. Absence of interparental recombination in multiplicity reconstitution from incomplete bacteriophage T4 genomes. J Virol. 1976 Jun;18(3):873–884. doi: 10.1128/jvi.18.3.873-884.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Kozinski A. W., Kozinski P. B., James R. Molecular recombination in T4 bacteriophage deoxyribonucleic acid. I. Tertiary structure of early replicative and recombining deoxyribonucleic acid. J Virol. 1967 Aug;1(4):758–770. doi: 10.1128/jvi.1.4.758-770.1967. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Kreuzer K. N., Alberts B. M. A defective phage system reveals bacteriophage T4 replication origins that coincide with recombination hot spots. Proc Natl Acad Sci U S A. 1985 May;82(10):3345–3349. doi: 10.1073/pnas.82.10.3345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Kreuzer K. N., Engman H. W., Yap W. Y. Tertiary initiation of replication in bacteriophage T4. Deletion of the overlapping uvsY promoter/replication origin from the phage genome. J Biol Chem. 1988 Aug 15;263(23):11348–11357. [PubMed] [Google Scholar]
  22. Little J. W. Mutants of bacteriophage T4 which allow amber mutants of gene 32 to grow in ochre-suppressing hosts. Virology. 1973 May;53(1):47–59. doi: 10.1016/0042-6822(73)90464-9. [DOI] [PubMed] [Google Scholar]
  23. Liu C. C., Alberts B. M. Pentaribonucleotides of mixed sequence are synthesized and efficiently prime de novo DNA chain starts in the T4 bacteriophage DNA replication system. Proc Natl Acad Sci U S A. 1980 Oct;77(10):5698–5702. doi: 10.1073/pnas.77.10.5698. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Morris C. F., Hama-Inaba H., Mace D., Sinha N. K., Alberts B. Purification of the gene 43, 44, 45, and 62 proteins of the bacteriophage T4 DNA replication apparatus. J Biol Chem. 1979 Jul 25;254(14):6787–6796. [PubMed] [Google Scholar]
  25. Mosig G., Luder A., Ernst A., Canan N. Bypass of a primase requirement for bacteriophage T4 DNA replication in vivo by a recombination enzyme, endonuclease VII. New Biol. 1991 Dec;3(12):1195–1205. [PubMed] [Google Scholar]
  26. Nossal N. G. RNA priming of DNA replication by bacteriophage T4 proteins. J Biol Chem. 1980 Mar 10;255(5):2176–2182. [PubMed] [Google Scholar]
  27. Selick H. E., Kreuzer K. N., Alberts B. M. The bacteriophage T4 insertion/substitution vector system. A method for introducing site-specific mutations into the virus chromosome. J Biol Chem. 1988 Aug 15;263(23):11336–11347. [PubMed] [Google Scholar]
  28. Venkatesan M., Silver L. L., Nossal N. G. Bacteriophage T4 gene 41 protein, required for the synthesis of RNA primers, is also a DNA helicase. J Biol Chem. 1982 Oct 25;257(20):12426–12434. [PubMed] [Google Scholar]
  29. Walker J. E., Saraste M., Runswick M. J., Gay N. J. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1982;1(8):945–951. doi: 10.1002/j.1460-2075.1982.tb01276.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Wu J. R., Yeh Y. C., Ebisuzaki K. Genetic analysis of dar, uvsW, and uvsY in bacteriophage T4: dar and uvsW are alleles. J Virol. 1984 Dec;52(3):1028–1031. doi: 10.1128/jvi.52.3.1028-1031.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Wu J. R., Yeh Y. C. New late gene, dar, involved in the replication of bacteriophage T4 DNA. II. Overproduction of DNA binding protein (gene 32 protein) and further characterization. J Virol. 1978 Jul;27(1):90–102. doi: 10.1128/jvi.27.1.90-102.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Wu R., Yeh Y. C. DNA arrested mutants of gene 59 of bacteriophage T4. II. Replicative intermediates. Virology. 1974 May;59(1):108–122. doi: 10.1016/0042-6822(74)90209-8. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES