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. 1994 May;176(9):2767–2770. doi: 10.1128/jb.176.9.2767-2770.1994

Overexpression of genes of an extreme thermophile Thermus thermophilus, in Escherichia coli cells.

M Ishida 1, T Oshima 1
PMCID: PMC205423  PMID: 8169232

Abstract

The 3-isopropylmalate dehydrogenase gene from an extreme thermophile, Thermus thermophilus, was not expressed in Escherichia coli unless a palindromic structure around the ribosome binding site was eliminated or a leader open reading frame was introduced into the upstream flanking region of the gene. This report suggests a way to increase the expression of this gene, with a high G+C content, in E. coli.

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Selected References

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  1. Alldread R. M., Nicholls D. J., Sundaram T. K., Scawen M. D., Atkinson T. Overexpression of the Thermus aquaticus B malate dehydrogenase-encoding gene in Escherichia coli. Gene. 1992 May 1;114(1):139–143. doi: 10.1016/0378-1119(92)90720-a. [DOI] [PubMed] [Google Scholar]
  2. Berkhout B., Schmidt B. F., van Strien A., van Boom J., van Westrenen J., van Duin J. Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene. J Mol Biol. 1987 Jun 5;195(3):517–524. doi: 10.1016/0022-2836(87)90180-x. [DOI] [PubMed] [Google Scholar]
  3. Bowen D., Littlechild J. A., Fothergill J. E., Watson H. C., Hall L. Nucleotide sequence of the phosphoglycerate kinase gene from the extreme thermophile Thermus thermophilus. Comparison of the deduced amino acid sequence with that of the mesophilic yeast phosphoglycerate kinase. Biochem J. 1988 Sep 1;254(2):509–517. doi: 10.1042/bj2540509. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Cobianchi F., Wilson S. H. Enzymes for modifying and labeling DNA and RNA. Methods Enzymol. 1987;152:94–110. doi: 10.1016/0076-6879(87)52013-4. [DOI] [PubMed] [Google Scholar]
  5. Croft J. E., Love D. R., Bergquist P. L. Expression of leucine genes from an extremely thermophilic bacterium in Escherichia coli. Mol Gen Genet. 1987 Dec;210(3):490–497. doi: 10.1007/BF00327202. [DOI] [PubMed] [Google Scholar]
  6. Kanaya S., Itaya M. Expression, purification, and characterization of a recombinant ribonuclease H from Thermus thermophilus HB8. J Biol Chem. 1992 May 15;267(14):10184–10192. [PubMed] [Google Scholar]
  7. Koyama Y., Furukawa K. Cloning and sequence analysis of tryptophan synthetase genes of an extreme thermophile, Thermus thermophilus HB27: plasmid transfer from replica-plated Escherichia coli recombinant colonies to competent T. thermophilus cells. J Bacteriol. 1990 Jun;172(6):3490–3495. doi: 10.1128/jb.172.6.3490-3495.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Kramer W., Fritz H. J. Oligonucleotide-directed construction of mutations via gapped duplex DNA. Methods Enzymol. 1987;154:350–367. doi: 10.1016/0076-6879(87)54084-8. [DOI] [PubMed] [Google Scholar]
  9. Kushiro M., Shimizu M., Tomita K. Molecular cloning and sequence determination of the tuf gene coding for the elongation factor Tu of Thermus thermophilus HB8. Eur J Biochem. 1987 Dec 30;170(1-2):93–98. doi: 10.1111/j.1432-1033.1987.tb13671.x. [DOI] [PubMed] [Google Scholar]
  10. Makoff A. J., Smallwood A. E. The use of two-cistron constructions in improving the expression of a heterologous gene in E. coli. Nucleic Acids Res. 1990 Apr 11;18(7):1711–1718. doi: 10.1093/nar/18.7.1711. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Miyazaki K., Eguchi H., Yamagishi A., Wakagi T., Oshima T. Molecular cloning of the isocitrate dehydrogenase gene of an extreme thermophile, Thermus thermophilus HB8. Appl Environ Microbiol. 1992 Jan;58(1):93–98. doi: 10.1128/aem.58.1.93-98.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Morrison D. A. Transformation and preservation of competent bacterial cells by freezing. Methods Enzymol. 1979;68:326–331. doi: 10.1016/0076-6879(79)68023-0. [DOI] [PubMed] [Google Scholar]
  13. Nagahari K., Koshikawa T., Sakaguchi K. Cloning and expression of the leucine gene from Thermus thermophilus in Escherichia coli. Gene. 1980 Jul;10(2):137–145. doi: 10.1016/0378-1119(80)90131-6. [DOI] [PubMed] [Google Scholar]
  14. Nishiyama M., Horinouchi S., Beppu T. Characterization of an operon encoding succinyl-CoA synthetase and malate dehydrogenase from Thermus flavus AT-62 and its expression in Escherichia coli. Mol Gen Genet. 1991 Apr;226(1-2):1–9. doi: 10.1007/BF00273580. [DOI] [PubMed] [Google Scholar]
  15. Nureki O., Muramatsu T., Suzuki K., Kohda D., Matsuzawa H., Ohta T., Miyazawa T., Yokoyama S. Methionyl-tRNA synthetase gene from an extreme thermophile, Thermus thermophilus HB8. Molecular cloning, primary-structure analysis, expression in Escherichia coli, and site-directed mutagenesis. J Biol Chem. 1991 Feb 15;266(5):3268–3277. [PubMed] [Google Scholar]
  16. Nureki O., Suzuki K., Hara-Yokoyama M., Kohno T., Matsuzawa H., Ohta T., Shimizu T., Morikawa K., Miyazawa T., Yokoyama S. Glutamyl-tRNA synthetase from Thermus thermophilus HB8. Molecular cloning of the gltX gene and crystallization of the overproduced protein. Eur J Biochem. 1992 Mar 1;204(2):465–472. doi: 10.1111/j.1432-1033.1992.tb16656.x. [DOI] [PubMed] [Google Scholar]
  17. Ono M., Matsuzawa H., Ohta T. Nucleotide sequence and characteristics of the gene for L-lactate dehydrogenase of Thermus aquaticus YT-1 and the deduced amino acid sequence of the enzyme. J Biochem. 1990 Jan;107(1):21–26. doi: 10.1093/oxfordjournals.jbchem.a123004. [DOI] [PubMed] [Google Scholar]
  18. Park H. J., Kreutzer R., Reiser C. O., Sprinzl M. Molecular cloning and nucleotide sequence of the gene encoding a H2O2-forming NADH oxidase from the extreme thermophilic Thermus thermophilus HB8 and its expression in Escherichia coli. Eur J Biochem. 1992 May 1;205(3):875–879. doi: 10.1111/j.1432-1033.1992.tb16852.x. [DOI] [PubMed] [Google Scholar]
  19. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  20. Saito Y., Ishii Y., Niwa M., Ueda I. Direct expression of a synthetic somatomedin C gene in Escherichia coli by use of a two-cistron system. J Biochem. 1987 May;101(5):1281–1288. doi: 10.1093/oxfordjournals.jbchem.a121992. [DOI] [PubMed] [Google Scholar]
  21. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Sato S., Nakada Y., Kanaya S., Tanaka T. Molecular cloning and nucleotide sequence of Thermus thermophilus HB8 trpE and trpG. Biochim Biophys Acta. 1988 Sep 7;950(3):303–312. doi: 10.1016/0167-4781(88)90126-1. [DOI] [PubMed] [Google Scholar]
  23. Schoner B. E., Belagaje R. M., Schoner R. G. Enhanced translational efficiency with two-cistron expression system. Methods Enzymol. 1990;185:94–103. doi: 10.1016/0076-6879(90)85010-l. [DOI] [PubMed] [Google Scholar]
  24. Schoner B. E., Belagaje R. M., Schoner R. G. Translation of a synthetic two-cistron mRNA in Escherichia coli. Proc Natl Acad Sci U S A. 1986 Nov;83(22):8506–8510. doi: 10.1073/pnas.83.22.8506. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Seidler L., Peter M., Meissner F., Sprinzl M. Sequence and identification of the nucleotide binding site for the elongation factor Tu from Thermus thermophilus HB8. Nucleic Acids Res. 1987 Nov 25;15(22):9263–9277. doi: 10.1093/nar/15.22.9263. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Soberon X., Covarrubias L., Bolivar F. Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325. Gene. 1980 May;9(3-4):287–305. doi: 10.1016/0378-1119(90)90328-o. [DOI] [PubMed] [Google Scholar]
  27. Tanaka T., Kawano N., Oshima T. Cloning of 3-isopropylmalate dehydrogenase gene of an extreme thermophile and partial purification of the gene product. J Biochem. 1981 Feb;89(2):677–682. doi: 10.1093/oxfordjournals.jbchem.a133245. [DOI] [PubMed] [Google Scholar]
  28. Tsutsumi S., Denda K., Yokoyama K., Oshima T., Date T., Yoshida M. Molecular cloning of genes encoding major two subunits of a eubacterial V-type ATPase from Thermus thermophilus. Biochim Biophys Acta. 1991 Dec 3;1098(1):13–20. [PubMed] [Google Scholar]
  29. Xu J., Seki M., Denda K., Yoshida M. Molecular cloning of phosphofructokinase 1 gene from a thermophilic bacterium, Thermus thermophilus. Biochem Biophys Res Commun. 1991 May 15;176(3):1313–1318. doi: 10.1016/0006-291x(91)90429-b. [DOI] [PubMed] [Google Scholar]
  30. Yamada T., Akutsu N., Miyazaki K., Kakinuma K., Yoshida M., Oshima T. Purification, catalytic properties, and thermal stability of threo-Ds-3-isopropylmalate dehydrogenase coded by leuB gene from an extreme thermophile, Thermus thermophilus strain HB8. J Biochem. 1990 Sep;108(3):449–456. doi: 10.1093/oxfordjournals.jbchem.a123220. [DOI] [PubMed] [Google Scholar]
  31. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
  32. Zuker M., Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 1981 Jan 10;9(1):133–148. doi: 10.1093/nar/9.1.133. [DOI] [PMC free article] [PubMed] [Google Scholar]

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