Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1992 Apr;174(7):2065–2071. doi: 10.1128/jb.174.7.2065-2071.1992

The bile acid-inducible baiB gene from Eubacterium sp. strain VPI 12708 encodes a bile acid-coenzyme A ligase.

D H Mallonee 1, J L Adams 1, P B Hylemon 1
PMCID: PMC205821  PMID: 1551828

Abstract

The baiB gene from Eubacterium sp. strain VPI 12708 was previously cloned, sequenced, and shown to be part of a large bile acid-inducible operon encoding polypeptides believed to be involved in bile acid 7 alpha-dehydroxylation. In the present study, the baiB gene was subcloned and expressed in Escherichia coli and shown to encode a bile acid-coenzyme A (CoA) ligase. This ligase required a C-24 bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. Product analysis by reverse-phase high-performance liquid chromatography revealed final reaction products that comigrated with cholyl-CoA and AMP. A putative bile acid-AMP intermediate was detected when CoA was omitted from the reaction mixture. The bile acid-CoA ligase has amino acid sequence similarity to several other polypeptides involved in the ATP-dependent linking of AMP or CoA to cyclic carboxylated compounds. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7 alpha-dehydroxylation pathway in Eubacterium sp. strain VPI 12708.

Full text

PDF
2065

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Altenschmidt U., Oswald B., Fuchs G. Purification and characterization of benzoate-coenzyme A ligase and 2-aminobenzoate-coenzyme A ligases from a denitrifying Pseudomonas sp. J Bacteriol. 1991 Sep;173(17):5494–5501. doi: 10.1128/jb.173.17.5494-5501.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979 Nov 24;7(6):1513–1523. doi: 10.1093/nar/7.6.1513. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  4. Coleman J. P., White W. B., Egestad B., Sjövall J., Hylemon P. B. Biosynthesis of a novel bile acid nucleotide and mechanism of 7 alpha-dehydroxylation by an intestinal Eubacterium species. J Biol Chem. 1987 Apr 5;262(10):4701–4707. [PubMed] [Google Scholar]
  5. Coleman J. P., White W. B., Hylemon P. B. Molecular cloning of bile acid 7-dehydroxylase from Eubacterium sp. strain VPI 12708. J Bacteriol. 1987 Apr;169(4):1516–1521. doi: 10.1128/jb.169.4.1516-1521.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Coleman J. P., White W. B., Lijewski M., Hylemon P. B. Nucleotide sequence and regulation of a gene involved in bile acid 7-dehydroxylation by Eubacterium sp. strain VPI 12708. J Bacteriol. 1988 May;170(5):2070–2077. doi: 10.1128/jb.170.5.2070-2077.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Connerton I. F., Fincham J. R., Sandeman R. A., Hynes M. J. Comparison and cross-species expression of the acetyl-CoA synthetase genes of the Ascomycete fungi, Aspergillus nidulans and Neurospora crassa. Mol Microbiol. 1990 Mar;4(3):451–460. doi: 10.1111/j.1365-2958.1990.tb00611.x. [DOI] [PubMed] [Google Scholar]
  8. Dombroski A. J., Platt T. Structure of rho factor: an RNA-binding domain and a separate region with strong similarity to proven ATP-binding domains. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2538–2542. doi: 10.1073/pnas.85.8.2538. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. ENEROTH P. THIN-LAYER CHROMATOGRAPHY OF BILE ACIDS. J Lipid Res. 1963 Jan;4:11–16. [PubMed] [Google Scholar]
  10. Geissler J. F., Harwood C. S., Gibson J. Purification and properties of benzoate-coenzyme A ligase, a Rhodopseudomonas palustris enzyme involved in the anaerobic degradation of benzoate. J Bacteriol. 1988 Apr;170(4):1709–1714. doi: 10.1128/jb.170.4.1709-1714.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Gopal-Srivastava R., Mallonee D. H., White W. B., Hylemon P. B. Multiple copies of a bile acid-inducible gene in Eubacterium sp. strain VPI 12708. J Bacteriol. 1990 Aug;172(8):4420–4426. doi: 10.1128/jb.172.8.4420-4426.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hori K., Yamamoto Y., Minetoki T., Kurotsu T., Kanda M., Miura S., Okamura K., Furuyama J., Saito Y. Molecular cloning and nucleotide sequence of the gramicidin S synthetase 1 gene. J Biochem. 1989 Oct;106(4):639–645. doi: 10.1093/oxfordjournals.jbchem.a122909. [DOI] [PubMed] [Google Scholar]
  13. Killenberg P. G. Measurement and subcellular distribution of choloyl-CoA synthetase and bile acid-CoA:amino acid N-acyltransferase activities in rat liver. J Lipid Res. 1978 Jan;19(1):24–31. [PubMed] [Google Scholar]
  14. Krätzschmar J., Krause M., Marahiel M. A. Gramicidin S biosynthesis operon containing the structural genes grsA and grsB has an open reading frame encoding a protein homologous to fatty acid thioesterases. J Bacteriol. 1989 Oct;171(10):5422–5429. doi: 10.1128/jb.171.10.5422-5429.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lipmann F. Bacterial production of antibiotic polypeptides by thiol-linked synthesis on protein templates. Adv Microb Physiol. 1980;21:227–266. doi: 10.1016/s0065-2911(08)60357-4. [DOI] [PubMed] [Google Scholar]
  16. Lozoya E., Hoffmann H., Douglas C., Schulz W., Scheel D., Hahlbrock K. Primary structures and catalytic properties of isoenzymes encoded by the two 4-coumarate: CoA ligase genes in parsley. Eur J Biochem. 1988 Oct 1;176(3):661–667. doi: 10.1111/j.1432-1033.1988.tb14328.x. [DOI] [PubMed] [Google Scholar]
  17. Mallonee D. H., White W. B., Hylemon P. B. Cloning and sequencing of a bile acid-inducible operon from Eubacterium sp. strain VPI 12708. J Bacteriol. 1990 Dec;172(12):7011–7019. doi: 10.1128/jb.172.12.7011-7019.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Masuda T., Tatsumi H., Nakano E. Cloning and sequence analysis of cDNA for luciferase of a Japanese firefly, Luciola cruciata. Gene. 1989 Apr 30;77(2):265–270. doi: 10.1016/0378-1119(89)90074-7. [DOI] [PubMed] [Google Scholar]
  19. Merkel S. M., Eberhard A. E., Gibson J., Harwood C. S. Involvement of coenzyme A thioesters in anaerobic metabolism of 4-hydroxybenzoate by Rhodopseudomonas palustris. J Bacteriol. 1989 Jan;171(1):1–7. doi: 10.1128/jb.171.1.1-7.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Nunn W. D. A molecular view of fatty acid catabolism in Escherichia coli. Microbiol Rev. 1986 Jun;50(2):179–192. doi: 10.1128/mr.50.2.179-192.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Paone D. A., Hylemon P. B. HPLC purification and preparation of antibodies to cholic acid-inducible polypeptides from Eubacterium sp. V.P.I. 12708. J Lipid Res. 1984 Dec 1;25(12):1343–1349. [PubMed] [Google Scholar]
  22. Rusnak F., Faraci W. S., Walsh C. T. Subcloning, expression, and purification of the enterobactin biosynthetic enzyme 2,3-dihydroxybenzoate-AMP ligase: demonstration of enzyme-bound (2,3-dihydroxybenzoyl)adenylate product. Biochemistry. 1989 Aug 22;28(17):6827–6835. doi: 10.1021/bi00443a008. [DOI] [PubMed] [Google Scholar]
  23. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Schepers L., Casteels M., Verheyden K., Parmentier G., Asselberghs S., Eyssen H. J., Mannaerts G. P. Subcellular distribution and characteristics of trihydroxycoprostanoyl-CoA synthetase in rat liver. Biochem J. 1989 Jan 1;257(1):221–229. doi: 10.1042/bj2570221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Shah P. P., Staple E. Synthesis of coenzyme A esters of some bile acids. Steroids. 1968 Nov;12(5):571–576. doi: 10.1016/s0039-128x(68)80034-0. [DOI] [PubMed] [Google Scholar]
  26. Staab J. F., Elkins M. F., Earhart C. F. Nucleotide sequence of the Escherichia coli entE gene. FEMS Microbiol Lett. 1989 May;50(1-2):15–19. doi: 10.1016/0378-1097(89)90450-3. [DOI] [PubMed] [Google Scholar]
  27. Studier F. W., Rosenberg A. H., Dunn J. J., Dubendorff J. W. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 1990;185:60–89. doi: 10.1016/0076-6879(90)85008-c. [DOI] [PubMed] [Google Scholar]
  28. Suzuki H., Kawarabayasi Y., Kondo J., Abe T., Nishikawa K., Kimura S., Hashimoto T., Yamamoto T. Structure and regulation of rat long-chain acyl-CoA synthetase. J Biol Chem. 1990 May 25;265(15):8681–8685. [PubMed] [Google Scholar]
  29. Vessey D. A., Zakim D. Characterization of microsomal choloyl-coenzyme A synthetase. Biochem J. 1977 May 1;163(2):357–362. doi: 10.1042/bj1630357. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Walker J. E., Saraste M., Runswick M. J., Gay N. J. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1982;1(8):945–951. doi: 10.1002/j.1460-2075.1982.tb01276.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Weckermann R., Fürbass R., Marahiel M. A. Complete nucleotide sequence of the tycA gene coding the tyrocidine synthetase 1 from Bacillus brevis. Nucleic Acids Res. 1988 Dec 23;16(24):11841–11841. doi: 10.1093/nar/16.24.11841. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. White B. A., Cacciapuoti A. F., Fricke R. J., Whitehead T. R., Mosbach E. H., Hylemon P. B. Cofactor requiremets for 7 alpha-dehydroxylation of cholic and chenodeoxycholic acid in cell extracts of the intestinal anaerobic bacterium, Eubacterium species V.P.I. 13708. J Lipid Res. 1981 Aug;22(6):891–898. [PubMed] [Google Scholar]
  33. White B. A., Lipsky R. L., Fricke R. J., Hylemon P. B. Bile acid induction specificity of 7 alpha-dehydroxylase activity in an intestinal Eubacterium species. Steroids. 1980 Jan;35(1):103–109. doi: 10.1016/0039-128x(80)90115-4. [DOI] [PubMed] [Google Scholar]
  34. White W. B., Coleman J. P., Hylemon P. B. Molecular cloning of a gene encoding a 45,000-dalton polypeptide associated with bile acid 7-dehydroxylation in Eubacterium sp. strain VPI 12708. J Bacteriol. 1988 Feb;170(2):611–616. doi: 10.1128/jb.170.2.611-616.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. White W. B., Franklund C. V., Coleman J. P., Hylemon P. B. Evidence for a multigene family involved in bile acid 7-dehydroxylation in Eubacterium sp. strain VPI 12708. J Bacteriol. 1988 Oct;170(10):4555–4561. doi: 10.1128/jb.170.10.4555-4561.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Young R. A., Davis R. W. Efficient isolation of genes by using antibody probes. Proc Natl Acad Sci U S A. 1983 Mar;80(5):1194–1198. doi: 10.1073/pnas.80.5.1194. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Zhao Y., Kung S. D., Dube S. K. Nucleotide sequence of rice 4-coumarate:CoA ligase gene, 4-CL.1. Nucleic Acids Res. 1990 Oct 25;18(20):6144–6144. doi: 10.1093/nar/18.20.6144. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. de Wet J. R., Wood K. V., DeLuca M., Helinski D. R., Subramani S. Firefly luciferase gene: structure and expression in mammalian cells. Mol Cell Biol. 1987 Feb;7(2):725–737. doi: 10.1128/mcb.7.2.725. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES