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. 1992 Apr;174(7):2384–2387. doi: 10.1128/jb.174.7.2384-2387.1992

Similarity between the Myxococcus xanthus and Stigmatella aurantiaca reverse transcriptase genes associated with multicopy, single-stranded DNA.

M Y Hsu 1, C Xu 1, M Inouye 1, S Inouye 1
PMCID: PMC205862  PMID: 1372604

Abstract

To determine the evolutional relationship of bacterial retroelements of Myxococcus xanthus and Stigmatella aurantiaca, the nucleotide sequence of 3,060 bases encompassing msr, msd, and the upstream region of msd (downstream of msr) of S. aurantiaca DW4 was determined and compared with the same region from M. xanthus. An open reading frame was found 92 bases upstream of msd which encoded a polypeptide of 480 amino acid residues having 73% identity with the reverse transcriptase of M. xanthus. Together with high homologies in msr (86%) and msd (81%) regions, the present data indicate that the reverse transcriptase genes as well as the retrons of M. xanthus (retron-Mx162) and S. aurantiaca (retron-Sa163) were derived from a common progenitor retron which possibly before the two myxobacterial species diverged.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Chang A. C., Cohen S. N. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol. 1978 Jun;134(3):1141–1156. doi: 10.1128/jb.134.3.1141-1156.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Dhundale A. R., Furuichi T., Inouye S., Inouye M. Distribution of multicopy single-stranded DNA among myxobacteria and related species. J Bacteriol. 1985 Nov;164(2):914–917. doi: 10.1128/jb.164.2.914-917.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Dhundale A., Inouye M., Inouye S. A new species of multicopy single-stranded DNA from Myxococcus xanthus with conserved structural features. J Biol Chem. 1988 Jun 25;263(18):9055–9058. [PubMed] [Google Scholar]
  4. Dhundale A., Lampson B., Furuichi T., Inouye M., Inouye S. Structure of msDNA from Myxococcus xanthus: evidence for a long, self-annealing RNA precursor for the covalently linked, branched RNA. Cell. 1987 Dec 24;51(6):1105–1112. doi: 10.1016/0092-8674(87)90596-4. [DOI] [PubMed] [Google Scholar]
  5. Furuichi T., Dhundale A., Inouye M., Inouye S. Branched RNA covalently linked to the 5' end of a single-stranded DNA in Stigmatella aurantiaca: structure of msDNA. Cell. 1987 Jan 16;48(1):47–53. doi: 10.1016/0092-8674(87)90354-0. [DOI] [PubMed] [Google Scholar]
  6. Furuichi T., Inouye S., Inouye M. Biosynthesis and structure of stable branched RNA covalently linked to the 5' end of multicopy single-stranded DNA of Stigmatella aurantiaca. Cell. 1987 Jan 16;48(1):55–62. doi: 10.1016/0092-8674(87)90355-2. [DOI] [PubMed] [Google Scholar]
  7. Hsu M. Y., Inouye S., Inouye M. Structural requirements of the RNA precursor for the biosynthesis of the branched RNA-linked multicopy single-stranded DNA of Myxococcus xanthus. J Biol Chem. 1989 Apr 15;264(11):6214–6219. [PubMed] [Google Scholar]
  8. Inouye M., Inouye S. Retroelements in bacteria. Trends Biochem Sci. 1991 Jan;16(1):18–21. doi: 10.1016/0968-0004(91)90010-s. [DOI] [PubMed] [Google Scholar]
  9. Inouye M., Inouye S. msDNA and bacterial reverse transcriptase. Annu Rev Microbiol. 1991;45:163–186. doi: 10.1146/annurev.mi.45.100191.001115. [DOI] [PubMed] [Google Scholar]
  10. Inouye S., Herzer P. J., Inouye M. Two independent retrons with highly diverse reverse transcriptases in Myxococcus xanthus. Proc Natl Acad Sci U S A. 1990 Feb;87(3):942–945. doi: 10.1073/pnas.87.3.942. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Inouye S., Hsu M. Y., Eagle S., Inouye M. Reverse transcriptase associated with the biosynthesis of the branched RNA-linked msDNA in Myxococcus xanthus. Cell. 1989 Feb 24;56(4):709–717. doi: 10.1016/0092-8674(89)90593-x. [DOI] [PubMed] [Google Scholar]
  12. Lampson B. C., Inouye M., Inouye S. Survey of multicopy single-stranded DNAs and reverse transcriptase genes among natural isolates of Myxococcus xanthus. J Bacteriol. 1991 Sep;173(17):5363–5370. doi: 10.1128/jb.173.17.5363-5370.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lampson B. C., Sun J., Hsu M. Y., Vallejo-Ramirez J., Inouye S., Inouye M. Reverse transcriptase in a clinical strain of Escherichia coli: production of branched RNA-linked msDNA. Science. 1989 Feb 24;243(4894 Pt 1):1033–1038. doi: 10.1126/science.2466332. [DOI] [PubMed] [Google Scholar]
  14. Lim D., Maas W. K. Reverse transcriptase-dependent synthesis of a covalently linked, branched DNA-RNA compound in E. coli B. Cell. 1989 Mar 10;56(5):891–904. doi: 10.1016/0092-8674(89)90693-4. [DOI] [PubMed] [Google Scholar]
  15. Qualls G. T., Stephens K., White D. Morphogenetic movements and multicellular development in the fruiting Myxobacterium, Stigmatella aurantiaca. Dev Biol. 1978 Sep;66(1):270–274. doi: 10.1016/0012-1606(78)90291-9. [DOI] [PubMed] [Google Scholar]
  16. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sun J., Inouye M., Inouye S. Association of a retroelement with a P4-like cryptic prophage (retronphage phi R73) integrated into the selenocystyl tRNA gene of Escherichia coli. J Bacteriol. 1991 Jul;173(13):4171–4181. doi: 10.1128/jb.173.13.4171-4181.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Vieira J., Messing J. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene. 1982 Oct;19(3):259–268. doi: 10.1016/0378-1119(82)90015-4. [DOI] [PubMed] [Google Scholar]
  19. Xiong Y., Eickbush T. H. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 1990 Oct;9(10):3353–3362. doi: 10.1002/j.1460-2075.1990.tb07536.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Yee T., Furuichi T., Inouye S., Inouye M. Multicopy single-stranded DNA isolated from a gram-negative bacterium, Myxococcus xanthus. Cell. 1984 Aug;38(1):203–209. doi: 10.1016/0092-8674(84)90541-5. [DOI] [PubMed] [Google Scholar]

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