Abstract
Two intracellular RNases which were easily separated by fractionation on strong anion- or cation-exchange resins were identified from Bacillus subtilis. One cleaved any phosphodiester bond, while the second cleaved only pyrimidine-N bonds. The enzyme with pyrimidine-N specificity was approximately 15 kDa, had a pH optimum of approximately 6.2, degraded C-C bonds approximately 10 times faster than U-U bonds, and was completely inactive against single-stranded DNA. The enzyme is called RNase C and may be the first reported broad-specificity endoribonuclease from B. subtilis.
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- Brosius J., Dull T. J., Sleeter D. D., Noller H. F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol. 1981 May 15;148(2):107–127. doi: 10.1016/0022-2836(81)90508-8. [DOI] [PubMed] [Google Scholar]
- Bycroft M., Ludvigsen S., Fersht A. R., Poulsen F. M. Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy. Biochemistry. 1991 Sep 3;30(35):8697–8701. doi: 10.1021/bi00099a030. [DOI] [PubMed] [Google Scholar]
- Cannistraro V. J., Kennell D. Purification and characterization of ribonuclease M and mRNA degradation in Escherichia coli. Eur J Biochem. 1989 May 1;181(2):363–370. doi: 10.1111/j.1432-1033.1989.tb14733.x. [DOI] [PubMed] [Google Scholar]
- Cannistraro V. J., Kennell D. RNase I*, a form of RNase I, and mRNA degradation in Escherichia coli. J Bacteriol. 1991 Aug;173(15):4653–4659. doi: 10.1128/jb.173.15.4653-4659.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cannistraro V. J., Kennell D. The 5' ends of RNA oligonucleotides in Escherichia coli and mRNA degradation. Eur J Biochem. 1993 Apr 1;213(1):285–293. doi: 10.1111/j.1432-1033.1993.tb17761.x. [DOI] [PubMed] [Google Scholar]
- Kennel D. Titration of the gene sites on DNA by DNA-RNA hybridization. II. The Escherichia coli chromosome. J Mol Biol. 1968 May 28;34(1):85–103. doi: 10.1016/0022-2836(68)90236-2. [DOI] [PubMed] [Google Scholar]
- Kerjan P., Szulmajster J. Intracellular ribonuclease activity in stationary phase cells of Bacillus subtilis. Biochem Biophys Res Commun. 1974 Aug 5;59(3):1079–1087. doi: 10.1016/s0006-291x(74)80089-6. [DOI] [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Levy C. C., Goldman P. Residue specificity of a ribonuclease which hydrolyzes polycytidylic acid. J Biol Chem. 1970 Jun;245(12):3257–3262. [PubMed] [Google Scholar]
- Levy C. C., Karpetsky T. P. The purification and properties of chicken liver RNase: An enzyme which is useful in distinguishing between cytidylic and uridylic acid residues. J Biol Chem. 1980 Mar 10;255(5):2153–2159. [PubMed] [Google Scholar]
- Lockard R. E., Alzner-Deweerd B., Heckman J. E., MacGee J., Tabor M. W., RajBhandary U. L. Sequence analysis of 5'[32P] labeled mRNA and tRNA using polyacrylamide gel electrophoresis. Nucleic Acids Res. 1978 Jan;5(1):37–56. doi: 10.1093/nar/5.1.37. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mauguen Y., Hartley R. W., Dodson E. J., Dodson G. G., Bricogne G., Chothia C., Jack A. Molecular structure of a new family of ribonucleases. Nature. 1982 May 13;297(5862):162–164. doi: 10.1038/297162a0. [DOI] [PubMed] [Google Scholar]
- McLennan B. D., Lane B. G. The chain termini of polynucleotides formed by limited enzymic fragmentation of wheat embryo ribosomal RNA. 2. Studies of a snake venom ribonuclease and pancreas ribonuclease. Can J Biochem. 1968 Jan;46(1):93–107. doi: 10.1139/o68-014. [DOI] [PubMed] [Google Scholar]
- NISHIMURA S., MARUO B. Intracellular ribonuclease from Bacillus subtilis. Biochim Biophys Acta. 1960 May 20;40:355–357. doi: 10.1016/0006-3002(60)91364-0. [DOI] [PubMed] [Google Scholar]
- Ostrowski W., Walczak Z., Stasiuk L., Laskowski M., Sr Properties and specificity of ribonuclease IIA from Thiobacillus thioparus. Acta Biochim Pol. 1970;17(2):73–87. [PubMed] [Google Scholar]
- Paddon C. J., Hartley R. W. Cloning, sequencing and transcription of an inactivated copy of Bacillus amyloliquefaciens extracellular ribonuclease (barnase). Gene. 1985;40(2-3):231–239. doi: 10.1016/0378-1119(85)90045-9. [DOI] [PubMed] [Google Scholar]
- Podder S. K. Synthetic action of ribonuclease T1. Biochim Biophys Acta. 1970;209(2):455–462. doi: 10.1016/0005-2787(70)90742-2. [DOI] [PubMed] [Google Scholar]
- RUSHIZKY G. W., GRECO A. E., HARTLEY R. W., Jr, SOBER H. A. STUDIES ON B. SUBTILIS RIBONUCLEASE. I. CHARACTERIZATION OF ENZYMATIC SPECIFICITY. Biochemistry. 1963 Jul-Aug;2:787–793. doi: 10.1021/bi00904a028. [DOI] [PubMed] [Google Scholar]
- Stevens A. Novel specificity of an endoribonuclease of yeast. FEBS Lett. 1986 Sep 15;205(2):210–214. doi: 10.1016/0014-5793(86)80899-7. [DOI] [PubMed] [Google Scholar]
- Stevens A. Pyrimidine-specific cleavage by an endoribonuclease of Saccharomyces cerevisiae. J Bacteriol. 1985 Oct;164(1):57–62. doi: 10.1128/jb.164.1.57-62.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sugi M., Yamasaki M., Mizukami T., Tamura G. ATP-sensitive ribonuclease of Bacillus cereus. J Biol Chem. 1980 Feb 10;255(3):943–948. [PubMed] [Google Scholar]
- WITZEL H., BARNARD E. A. Mechanism and binding sites in the ribonuclease reaction. II. Kinetic studies on the first step of the reaction. Biochem Biophys Res Commun. 1962 May 4;7:295–299. doi: 10.1016/0006-291x(62)90194-8. [DOI] [PubMed] [Google Scholar]
- Welker N. E., Campbell L. L. Comparison of the alpha-amylase of Bacillus subtilis and Bacillus amyloliquefaciens. J Bacteriol. 1967 Oct;94(4):1131–1135. doi: 10.1128/jb.94.4.1131-1135.1967. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Welker N. E., Campbell L. L. Unrelatedness of Bacillus amyloliquefaciens and Bacillus subtilis. J Bacteriol. 1967 Oct;94(4):1124–1130. doi: 10.1128/jb.94.4.1124-1130.1967. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woodroof E. A., Glitz D. G. Purification and characterization of two extracellular ribonucleases from Rhizopus oligosporus. Biochemistry. 1971 Apr 27;10(9):1532–1540. doi: 10.1021/bi00785a004. [DOI] [PubMed] [Google Scholar]
- Yamasaki M., Arima K. ATP-inhibited ribonuclease of Bacillus subtilis. II. Effect of adenosine triphosphate and other compounds. Biochim Biophys Acta. 1970;209(2):475–483. doi: 10.1016/0005-2787(70)90744-6. [DOI] [PubMed] [Google Scholar]
- Yamasaki M., Arima K. Intracellular ribonuclease of Bacillus subtilis; specific inhibition by ATP and dATP. Biochem Biophys Res Commun. 1969 Oct 22;37(3):430–436. doi: 10.1016/0006-291x(69)90933-4. [DOI] [PubMed] [Google Scholar]