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. 1993 Oct;175(20):6731–6734. doi: 10.1128/jb.175.20.6731-6734.1993

Absence of a direct role for RNase HI in initiation of DNA replication at the oriC site on the Escherichia coli chromosome.

X Hong 1, T Kogoma 1
PMCID: PMC206788  PMID: 8407851

Abstract

On the basis of the experiments carried out with rnhA224 mutants, we previously concluded that RNase HI is not essential for initiation of Escherichia coli chromosome replication at oriC (T. Kogoma, N.L. Subia, and K. von Meyenburg, Mol. Gen. Genet. 200:103-109, 1985). In light of the recent finding that rnhA224 is a UGA nonsense mutation which can be leaky in certain genetic backgrounds, we reexamined this conclusion with the use of rnhA339 (Null)::cat mutants. The possibility that recB+ is required for initiation at the alternative origins (oriKs) of replication in rnhA mutants was also tested. The results clearly indicated that RNase HI is not essential for oriC initiation and that recB+ is not required for initiation at oriK sites.

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Selected References

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  1. Amundsen S. K., Taylor A. F., Chaudhury A. M., Smith G. R. recD: the gene for an essential third subunit of exonuclease V. Proc Natl Acad Sci U S A. 1986 Aug;83(15):5558–5562. doi: 10.1073/pnas.83.15.5558. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Asai T., Sommer S., Bailone A., Kogoma T. Homologous recombination-dependent initiation of DNA replication from DNA damage-inducible origins in Escherichia coli. EMBO J. 1993 Aug;12(8):3287–3295. doi: 10.1002/j.1460-2075.1993.tb05998.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bochner B. R., Huang H. C., Schieven G. L., Ames B. N. Positive selection for loss of tetracycline resistance. J Bacteriol. 1980 Aug;143(2):926–933. doi: 10.1128/jb.143.2.926-933.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Gielow A., Kücherer C., Kölling R., Messer W. Transcription in the region of the replication origin, oriC, of Escherichia coli: termination of asnC transcripts. Mol Gen Genet. 1988 Nov;214(3):474–481. doi: 10.1007/BF00330483. [DOI] [PubMed] [Google Scholar]
  5. Hansen E. B., Atlung T., Hansen F. G., Skovgaard O., von Meyenburg K. Fine structure genetic map and complementation analysis of mutations in the dnaA gene of Escherichia coli. Mol Gen Genet. 1984;196(3):387–396. doi: 10.1007/BF00436184. [DOI] [PubMed] [Google Scholar]
  6. Harper D. J., Chen P. L., Carl P. L. Triton X-100 activates nucleoside triphosphate-dependent, recBC-dependent DNA synthesis in toluene-treated Escherichia coli. Biochim Biophys Acta. 1977 Feb 3;474(3):363–377. doi: 10.1016/0005-2787(77)90266-0. [DOI] [PubMed] [Google Scholar]
  7. Itaya M., Crouch R. J. A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K12 adversely affects growth. Mol Gen Genet. 1991 Jul;227(3):424–432. doi: 10.1007/BF00273933. [DOI] [PubMed] [Google Scholar]
  8. Itaya M., Crouch R. J. Correlation of activity with phenotypes of Escherichia coli partial function mutants of rnh, the gene encoding RNase H. Mol Gen Genet. 1991 Jul;227(3):433–437. doi: 10.1007/BF00273934. [DOI] [PubMed] [Google Scholar]
  9. Itaya M., McKelvin D., Chatterjie S. K., Crouch R. J. Selective cloning of genes encoding RNase H from Salmonella typhimurium, Saccharomyces cerevisiae and Escherichia coli rnh mutant. Mol Gen Genet. 1991 Jul;227(3):438–445. doi: 10.1007/BF00273935. [DOI] [PubMed] [Google Scholar]
  10. Kline B. C., Kogoma T., Tam J. E., Shields M. S. Requirement of the Escherichia coli dnaA gene product for plasmid F maintenance. J Bacteriol. 1986 Oct;168(1):440–443. doi: 10.1128/jb.168.1.440-443.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Kogoma T., Hong X., Cadwell G. W., Barnard K. G., Asai T. Requirement of homologous recombination functions for viability of the Escherichia coli cell that lacks RNase HI and exonuclease V activities. Biochimie. 1993;75(1-2):89–99. doi: 10.1016/0300-9084(93)90029-r. [DOI] [PubMed] [Google Scholar]
  12. Kogoma T., Kline B. C. Integrative suppression of dnaA(Ts) mutations mediated by plasmid F in Escherichia coli is a DnaA-dependent process. Mol Gen Genet. 1987 Dec;210(2):262–269. doi: 10.1007/BF00325692. [DOI] [PubMed] [Google Scholar]
  13. Kogoma T. RNase H-defective mutants of Escherichia coli. J Bacteriol. 1986 May;166(2):361–363. doi: 10.1128/jb.166.2.361-363.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Kogoma T., Subia N. L., von Meyenburg K. Function of ribonuclease H in initiation of DNA replication in Escherichia coli K-12. Mol Gen Genet. 1985;200(1):103–109. doi: 10.1007/BF00383320. [DOI] [PubMed] [Google Scholar]
  15. Kogoma T., von Meyenburg K. The origin of replication, oriC, and the dnaA protein are dispensable in stable DNA replication (sdrA) mutants of Escherichia coli K-12. EMBO J. 1983;2(3):463–468. doi: 10.1002/j.1460-2075.1983.tb01445.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kushner S. R. Differential thermolability of exonuclease and endonuclease activities of the recBC nuclease isolated from thermosensitive recB and recC mutants. J Bacteriol. 1974 Dec;120(3):1219–1222. doi: 10.1128/jb.120.3.1219-1222.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Magee T. R., Asai T., Malka D., Kogoma T. DNA damage-inducible origins of DNA replication in Escherichia coli. EMBO J. 1992 Nov;11(11):4219–4225. doi: 10.1002/j.1460-2075.1992.tb05516.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Magee T. R., Kogoma T. Requirement of RecBC enzyme and an elevated level of activated RecA for induced stable DNA replication in Escherichia coli. J Bacteriol. 1990 Apr;172(4):1834–1839. doi: 10.1128/jb.172.4.1834-1839.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Ogawa T., Pickett G. G., Kogoma T., Kornberg A. RNase H confers specificity in the dnaA-dependent initiation of replication at the unique origin of the Escherichia coli chromosome in vivo and in vitro. Proc Natl Acad Sci U S A. 1984 Feb;81(4):1040–1044. doi: 10.1073/pnas.81.4.1040. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Smith G. R. Homologous recombination in procaryotes. Microbiol Rev. 1988 Mar;52(1):1–28. doi: 10.1128/mr.52.1.1-28.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Way J. C., Davis M. A., Morisato D., Roberts D. E., Kleckner N. New Tn10 derivatives for transposon mutagenesis and for construction of lacZ operon fusions by transposition. Gene. 1984 Dec;32(3):369–379. doi: 10.1016/0378-1119(84)90012-x. [DOI] [PubMed] [Google Scholar]
  22. von Meyenburg K., Boye E., Skarstad K., Koppes L., Kogoma T. Mode of initiation of constitutive stable DNA replication in RNase H-defective mutants of Escherichia coli K-12. J Bacteriol. 1987 Jun;169(6):2650–2658. doi: 10.1128/jb.169.6.2650-2658.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]

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