Abstract
Single-base-pair changes well upstream of its transcription initiation site resulted in partially to fully constitutive expression of the D-serine deaminase structural gene, dsdA, independently of the cyclic AMP-cyclic AMP-binding protein complex and of the specific D-serine deaminase activator protein. These promoter mutations appear to define a consensus sequence that is repeated several times. Basal expression of dsdA+ was also strongly enhanced by subcloning on multicopy plasmids, by the DNA gyrase inhibitor novobiocin, and in dsdC(Con) mutants by increasing growth temperature. These results suggest that activation of dsdA+ expression by the dsdC-encoded protein involves distortion of promoter DNA. A dsdA translation start at bp -731 was verified by subcloning of dsdC+. Plasmid-specified activator at a high concentration interfered with chromosomal dsdC(Con) expression, and the interference was enhanced by deletion of most of the intergenic region from the plasmid. Even at a high concentration, however, plasmid-specified activator did not activate expression of chromosomal dsdA+, and in one case it was actually repressive. These results confirm the strong cis tropism of plasmid-specified dsdC-encoded protein and suggest that it is mediated by multiple sites in the dsdA-dsdC intergenic region.
Full text
PDF






Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bloom F. R., McFall E. Isolation and characterization of D-serine deaminase constitutive mutants by utilization of D-serine as sole carbon or nitrogen source. J Bacteriol. 1975 Mar;121(3):1078–1084. doi: 10.1128/jb.121.3.1078-1084.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bloom F. R., McFall E., Young M. C., Carothers A. M. Positive control in the D-serine deaminase system of Escherichia coli K-12. J Bacteriol. 1975 Mar;121(3):1092–1101. doi: 10.1128/jb.121.3.1092-1101.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bornstein-Forst S. M., McFall E., Palchaudhuri S. In vivo D-serine deaminase transcription start sites in wild-type Escherichia coli and in dsdA promoter mutants. J Bacteriol. 1987 Mar;169(3):1056–1060. doi: 10.1128/jb.169.3.1056-1060.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Carothers A. M., Heincz M. C., McFall E. Position effect on expression of dsd genes cloned onto multicopy plasmids. J Bacteriol. 1980 Apr;142(1):185–190. doi: 10.1128/jb.142.1.185-190.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Debarbouille M., Cossart P., Raibaud O. A DNA sequence containing the control sites for gene malT and for the malPQ operon. Mol Gen Genet. 1982;185(1):88–92. doi: 10.1007/BF00333795. [DOI] [PubMed] [Google Scholar]
- Ebright R. H., Cossart P., Gicquel-Sanzey B., Beckwith J. Mutations that alter the DNA sequence specificity of the catabolite gene activator protein of E. coli. Nature. 1984 Sep 20;311(5983):232–235. doi: 10.1038/311232a0. [DOI] [PubMed] [Google Scholar]
- Heincz M. C., Bornstein S. M., McFall E. Purification and characterization of D-serine deaminase activator protein. J Bacteriol. 1984 Oct;160(1):42–49. doi: 10.1128/jb.160.1.42-49.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Heincz M. C., Kelker N. E., McFall E. Positive control of D-serine deaminase synthesis in vitro. Proc Natl Acad Sci U S A. 1978 Apr;75(4):1695–1699. doi: 10.1073/pnas.75.4.1695. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Heincz M. C., McFall E. Role of the dsdC activator in regulation of D-serine deaminase synthesis. J Bacteriol. 1978 Oct;136(1):96–103. doi: 10.1128/jb.136.1.96-103.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huo L., Martin K. J., Schleif R. Alternative DNA loops regulate the arabinose operon in Escherichia coli. Proc Natl Acad Sci U S A. 1988 Aug;85(15):5444–5448. doi: 10.1073/pnas.85.15.5444. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee N., Francklyn C., Hamilton E. P. Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter. Proc Natl Acad Sci U S A. 1987 Dec;84(24):8814–8818. doi: 10.1073/pnas.84.24.8814. [DOI] [PMC free article] [PubMed] [Google Scholar]
- MCFALL E. PLEIOTROPIC MUTATIONS IN THE D-SERINE DEAMINASE SYSTEM OF ESCHERICHIA COLI. J Mol Biol. 1964 Sep;9:754–762. doi: 10.1016/s0022-2836(64)80180-7. [DOI] [PubMed] [Google Scholar]
- Marceau M., McFall E., Lewis S. D., Shafer J. A. D-serine dehydratase from Escherichia coli. DNA sequence and identification of catalytically inactive glycine to aspartic acid variants. J Biol Chem. 1988 Nov 15;263(32):16926–16933. [PubMed] [Google Scholar]
- McFall E. "Position effect" on dominance in the D-serine deaminase system of Escherichia coli K-12. J Bacteriol. 1967 Dec;94(6):1989–1993. doi: 10.1128/jb.94.6.1989-1993.1967. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFall E. Escherichia coli K-12 mutant forming a temperature-sensitive D-serine deaminase. J Bacteriol. 1975 Mar;121(3):1074–1077. doi: 10.1128/jb.121.3.1074-1077.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFall E., Heincz M. C. Identification and control of synthesis of the dsdC activator protein. J Bacteriol. 1983 Feb;153(2):872–877. doi: 10.1128/jb.153.2.872-877.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFall E. Role of adenosine 3',5'-cyclic monophosphate and its specific binding protein in the regulation of D-serine deaminase synthesis. J Bacteriol. 1973 Feb;113(2):781–785. doi: 10.1128/jb.113.2.781-785.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFall E. cis-acting proteins. J Bacteriol. 1986 Aug;167(2):429–432. doi: 10.1128/jb.167.2.429-432.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Morisato D., Way J. C., Kim H. J., Kleckner N. Tn10 transposase acts preferentially on nearby transposon ends in vivo. Cell. 1983 Mar;32(3):799–807. doi: 10.1016/0092-8674(83)90066-1. [DOI] [PubMed] [Google Scholar]
- Ow D. W., Sundaresan V., Rothstein D. M., Brown S. E., Ausubel F. M. Promoters regulated by the glnG (ntrC) and nifA gene products share a heptameric consensus sequence in the -15 region. Proc Natl Acad Sci U S A. 1983 May;80(9):2524–2528. doi: 10.1073/pnas.80.9.2524. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Palchaudhuri S., Patel V., McFall E. DNA sequence of the D-serine deaminase activator gene dsdC. J Bacteriol. 1988 Jan;170(1):330–334. doi: 10.1128/jb.170.1.330-334.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ptashne M. Gene regulation by proteins acting nearby and at a distance. Nature. 1986 Aug 21;322(6081):697–701. doi: 10.1038/322697a0. [DOI] [PubMed] [Google Scholar]
- Reitzer L. J., Magasanik B. Expression of glnA in Escherichia coli is regulated at tandem promoters. Proc Natl Acad Sci U S A. 1985 Apr;82(7):1979–1983. doi: 10.1073/pnas.82.7.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sanger F., Coulson A. R. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol. 1975 May 25;94(3):441–448. doi: 10.1016/0022-2836(75)90213-2. [DOI] [PubMed] [Google Scholar]
- Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
- Tessman E. S. Mutants of bacteriophage S13 blocked in infectious DNA synthesis. J Mol Biol. 1966 May;17(1):218–236. doi: 10.1016/s0022-2836(66)80104-3. [DOI] [PubMed] [Google Scholar]
- Venkatesan M. M., Buysse J. M., Kopecko D. J. Characterization of invasion plasmid antigen genes (ipaBCD) from Shigella flexneri. Proc Natl Acad Sci U S A. 1988 Dec;85(23):9317–9321. doi: 10.1073/pnas.85.23.9317. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]